Scos001429.1
Basic Information
- Insect
- Schrankia costaestrigalis
- Gene Symbol
- JARID2
- Assembly
- GCA_905475405.1
- Location
- FR997825.1:24074612-24085753[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-20 2.6e-16 61.1 0.1 6 88 614 693 609 694 0.90
Sequence Information
- Coding Sequence
- ATGGGAGTTTTAGCCAGTAATAATTTTACTGTTACCGCCTTCACCGCGTGGAGTACAACAAGAAGGGTTACCGCTCAGCGCAAATTTGCGCAAGGTGCATTTGTACCACCCATGTTATCAGCCGGCAGTGCTTCATCATCAGCGGCCACTGCAACTACTAACGGCAACCCTAATCTACCAGCTAATACTGCGGATCGCAGAGAGACTCATGTATTGAATCATGACAAAAATAACATCTTCCACAGTAACATGTCCGCTAGAAATCTACTTGACTTTGTGTGTTTTCAAAATACCCATACCCATTCGCAGCCCATAGTGCTAGTAGAAAGGCTTGCAGATAAAACTCCAAGAGAAATCAGAGAGCGCGCTCTAGCTGTACCAGTATCCCGGGAACCTATTGAACAAGTAACTATTGAACGTCTGGCATCTCCGGTACAAGACATGGTAGTCGTCCGAAAGACCAAACGTATTTCGAAACCCCGTCGCAAAGGCAAACAGCCGAGAGCTGCTACAAATTCAAAAAAGCATGTCATGAAGTTAAGACCAAAGAAAGATAATTTCTACTCATTGccaaaaacaagaaaaaatattaaacgtaagGCGAAAGCTGTCGCACCATCAGTGCCAGTCACAAAGAGAGTAGCCAGACAGACAAAGGCACCGCAACCATCTGAACCTAGAGCGAAGACTGTAGTTAGAAGGAAACGAAGTGTAGGTTCTTCACAGTTCACGCTAGATGATAATAGACCTTTGAAATATTTTGCTAAAAGTAGTACTCCTAAAGCTACGTGCCACACGTGCATGGGACCACCAATTGCAGTACCTAGAAGACGCTGTCACGAACCTAGTGTGTCAGTTCAAGTCGATTGCGAGACAATAGATTTACGATCTAATTTGGATACACGCTCTATTGCAAGCTATTACAGTGAGCAAGGAATCCATCGCTGGATGGATGGATCTTTGCCCAAAGACGGTTCCACGCCAGTCATGTCGCACCGGATTGGGCATGGCTTAGCTGACGCAGAAGAGTGTGTTCACCCTCAACCGAGGAAACATACTTGTATAGCGCAGTCATGGCGCTGCGTAAGAGACGTGGTGTATAGCACAGACATCGAATTTCATTCTAGATGCTCAGATTGCCAATATTGTGAAAGGGTTACTAAATATATTAAACTTTCAATGCTTCttaaaaaacaaagtaaaatagAATGCAGCACAGAAACAGGAAGTGTTGCTGATTTTAGAGATTGGCACGTACTCACACAAAAGTTTAAACCTACAATAGAgtggaataataataatcatgatggtttaaaacaaattaatgcaGATCTAATACCAAAACACCCACATCTAGTCATCAAAATCAAACTTCAAACGCATACCGCCCAAGCTTTCACATGTTGCCTGGTACCACGGTCAGAGGGCCGATTTTTTTCCCCGTTTGTTTTTGCAGATCACGATTCTTTAGTAGATGATATGGTTAGGACCCTAACCTCAATATTGGAGCCACCAGAAGTTCAGAACTTTGATCCGGTAATCATAAGTGTAGCACATGCCCCTGATGCTTTTGACAGTAGACCTCCTACAAGGTTGGATAATGAAGAAAATACTGAAAGCTTGGAGGCTCCTATTTTCTGGCCGTCAGTAGAAGAATTTAGTGACCCTATTGCGTACATAAACAAAATTTGGCCATCGGTGGTACCATTCGGTATCTGTAAGATTGTACCACCCGAAGAGTTTGAGCCGACCTGCACCCTGAACGAGGACATAAGGTTCACGGTGCACAACCAGTATGTTTCACGACTCTTCAACCGCTGGGGTGCGGCGGCTAAAGAAATGTGCGCGATTAAATCGTGCCTGAAAGAGCAGAACGTTGCAATGTTTCGCCATCCTGTTCTGGAGGGTGTTGAGATTAACCTCCCGAAACTCTACCAGCTAGTTCAACGACATGGAGGACTGGAAACagtcataaacaaaaaaaaatggggtAAAGTGGCAGAAGAAATGCGCTTCAGTAAGAATCCGTTCACGGAACGGAAGTTAGACAATTTATACGTGAGGTACCTTCTGCCCTACGCCTCGCTAACAACTTCCGAACGTGAACAGTTGCTCCTAAAGGTAGAAAAGGCCTGGGACAAGAAGCACCAGAAGATGCTCGACCGCGCCAGCAATCCCACACACGAACGTAAGAAAATCTTAGGAGAATCAGACTCCTCGGCTTCCGAAACTGAGAACGACACCACGATAGACGCAGAGGACTGCGTGCAAAGTGGCGTATCAATTAACCTAGCTAAATTCCGCAAGCTATCGAGAAACatctttaatacattttttaagaGTCAAACAGTAAAGACTGAGCAAATAGAGGAGGAATACTGGAAGATGGTCCTCTATGGTAACGAGCATGTGTGCGTCCACACTGCATTTATAGACACTGCCACGGAGAACCTTGGCTTCTCCAAGAACAAGAGTGATGGGTACGAGGCCCATCTATGGAATTTAAAACAAATAAGTTTAAACTCGGGAAACATTCTGAGGTCGCTCGGGCCAGTACTTGGAGTAACGGTACCGACTCTCCACCTGGGAATGCTTTTCGCATCCAGCTGCTGGCATAGGGACCCACATTCCATCCCGTGGGTTGAATACCAGCACAGCGGCCCTTCTAAAATatgGTACAGTATTCCTGAAAAAGAAGATACCAATTTCAGGACCGCTACGGATATACTGAGCCCGGCGGCATGTCAGAACAAGGCACTATGGCTGTCTTCTGACATAGCCATGATACCGCCCAACCTATTAAAAGAGCAAAACGTGAAAGTGTACAGAGTTGAGCAAAACCCTGGCGAGTTCGTGTTTGTAATGCCAAGAGCTTACTCATGTTCAATTAGCACAGGATTTACTATATCGGAAAGCGTTTATTTTGCGACTGAGTCGTGGTTGGACGACATGGTCAGTGTGTTCAAGGAAATCAGGGAATCATGCGAACCCACCACGTTCTCCTTAGAGCAACTGTTAATTGCTATGGCCTCAGATGAATCAACGTCTTTAgatatactaaaaaaaataaaacctacacTGGAAGATATTTTGTCGGAGGAATTCGAGTACAGAGATATATTAACTAAGAAAAAACTAAACACGAAGGTCATAAATAGGGTTCAGGCTGATTACAGCGAGCCGTCCACCTCGCGTGACACATGGAGCACCGCGTGCAGTCATCCAGTGTGGAACGTGCGAGACCAAGATGAATGTGAGATGTGTCGATGCATTCTCTTCATGTCTAAAGTCAAAAACCTGCCATTCATCCACTCTATGGTGTGCCTCAAGCATGCTCTGGTCATACTAGACTCCGAGAGGTTACATCAGAGTGttaacaaaaatgtaaatattttagaatTGCAACTTATATACACTGATCAGCACTTGAGAGAAATTATGAGAAAGCTAGATGAGAGAATAAAAAACTTGACCGAATAA
- Protein Sequence
- MGVLASNNFTVTAFTAWSTTRRVTAQRKFAQGAFVPPMLSAGSASSSAATATTNGNPNLPANTADRRETHVLNHDKNNIFHSNMSARNLLDFVCFQNTHTHSQPIVLVERLADKTPREIRERALAVPVSREPIEQVTIERLASPVQDMVVVRKTKRISKPRRKGKQPRAATNSKKHVMKLRPKKDNFYSLPKTRKNIKRKAKAVAPSVPVTKRVARQTKAPQPSEPRAKTVVRRKRSVGSSQFTLDDNRPLKYFAKSSTPKATCHTCMGPPIAVPRRRCHEPSVSVQVDCETIDLRSNLDTRSIASYYSEQGIHRWMDGSLPKDGSTPVMSHRIGHGLADAEECVHPQPRKHTCIAQSWRCVRDVVYSTDIEFHSRCSDCQYCERVTKYIKLSMLLKKQSKIECSTETGSVADFRDWHVLTQKFKPTIEWNNNNHDGLKQINADLIPKHPHLVIKIKLQTHTAQAFTCCLVPRSEGRFFSPFVFADHDSLVDDMVRTLTSILEPPEVQNFDPVIISVAHAPDAFDSRPPTRLDNEENTESLEAPIFWPSVEEFSDPIAYINKIWPSVVPFGICKIVPPEEFEPTCTLNEDIRFTVHNQYVSRLFNRWGAAAKEMCAIKSCLKEQNVAMFRHPVLEGVEINLPKLYQLVQRHGGLETVINKKKWGKVAEEMRFSKNPFTERKLDNLYVRYLLPYASLTTSEREQLLLKVEKAWDKKHQKMLDRASNPTHERKKILGESDSSASETENDTTIDAEDCVQSGVSINLAKFRKLSRNIFNTFFKSQTVKTEQIEEEYWKMVLYGNEHVCVHTAFIDTATENLGFSKNKSDGYEAHLWNLKQISLNSGNILRSLGPVLGVTVPTLHLGMLFASSCWHRDPHSIPWVEYQHSGPSKIWYSIPEKEDTNFRTATDILSPAACQNKALWLSSDIAMIPPNLLKEQNVKVYRVEQNPGEFVFVMPRAYSCSISTGFTISESVYFATESWLDDMVSVFKEIRESCEPTTFSLEQLLIAMASDESTSLDILKKIKPTLEDILSEEFEYRDILTKKKLNTKVINRVQADYSEPSTSRDTWSTACSHPVWNVRDQDECEMCRCILFMSKVKNLPFIHSMVCLKHALVILDSERLHQSVNKNVNILELQLIYTDQHLREIMRKLDERIKNLTE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -