Sgig074548.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012564.1:10558403-10585878[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.86 2.2e+02 4.7 1.0 1 23 256 278 256 279 0.95 2 22 0.81 2.1e+02 4.8 0.3 6 23 291 307 287 307 0.79 3 22 0.33 84 6.0 0.7 1 23 311 333 311 333 0.95 4 22 0.0052 1.3 11.7 1.3 1 23 381 404 381 404 0.95 5 22 1.9e-05 0.0048 19.4 4.1 1 23 408 430 408 430 0.98 6 22 0.1 26 7.7 0.8 2 23 438 458 438 458 0.96 7 22 4.3 1.1e+03 2.5 1.9 1 9 464 472 464 478 0.89 8 22 6.2 1.6e+03 2.0 2.4 1 9 484 492 484 498 0.88 9 22 6.2 1.6e+03 2.0 2.4 1 9 504 512 504 518 0.88 10 22 6.2 1.6e+03 2.0 2.4 1 9 524 532 524 538 0.88 11 22 1.4 3.6e+02 4.0 0.4 1 9 544 552 544 557 0.88 12 22 6.2 1.6e+03 2.0 2.4 1 9 561 569 561 575 0.88 13 22 6.2 1.6e+03 2.0 2.4 1 9 581 589 581 595 0.88 14 22 6.2 1.6e+03 2.0 2.4 1 9 601 609 601 615 0.88 15 22 4.3 1.1e+03 2.5 1.9 1 9 621 629 621 635 0.89 16 22 6.2 1.6e+03 2.0 2.4 1 9 641 649 641 655 0.88 17 22 6.2 1.6e+03 2.0 2.4 1 9 661 669 661 675 0.88 18 22 6.2 1.6e+03 2.0 2.4 1 9 681 689 681 695 0.88 19 22 0.00019 0.05 16.2 2.1 1 21 701 721 701 726 0.94 20 22 0.00057 0.15 14.7 0.4 1 23 734 757 734 757 0.94 21 22 0.00011 0.027 17.0 0.2 1 23 763 786 763 786 0.97 22 22 1.8 4.7e+02 3.7 0.0 1 12 796 807 796 811 0.87
Sequence Information
- Coding Sequence
- ATGGAGGTTCAACACGAATATAGTACAATATGCACTACTTGCTTGAGTAGTGGAAGGGACTTGTACTCCTTAACTGGGTCGGATGGTGTTTATCATGTTTTTCGATTACTTATGCATGACTTCGCCGACGACCGTTTTGGTGAAAGTATAATCAATTTAGATCAATTGGTATGTTGGGAATGTTACGCTTTAATGAAGAGGTTCATTCGTTTTAAAAGTCAGGTGCACAGCGCTCAGGAACACCTGCGCATTCTGGCCATGAGCAGGGCTCAGGAGACTATGGACCACACTTACATCAGCCAGTCACTGTCCTCTTTAGAGATAACGAATAAAAATGACTATGACAATATTTACCTGTACTACACTGAAGATGAATGGCCCCAGACGTTCATTGTAAACGAGGATGATGTCAAAAATGAACAGTTTGATCTAGCGCAGGCCACGAGAGAAAACTTAGCGCTTGATATTGATGAACACATACTGGAAGTACCGGAAATGGTTCTGGAGAACCCATTGACCGGCGTCATGTCTCGAGTCGTCGTCGATACTGACGCACTCGTGTCCACAGCTGGCTCCTTCAAGAACATCAGTTTGTCGCCGGACGAAACAACGCAGGTGCAGATGATGTGTCAGAAAAGCAACAATCCAACAACGATCAAAATTGAGACACGCAGAGACGGATACAACACCGAGTCCCTGAGTGAAACAGACATGTTAAACGTCAGagaagaaatgaaaaataaggTGCAATACGCGAGCACCGCCTACAAATGCGAGCTTTGCATCATCGGATTCTATACACAGCAGCAGGTCGAGGATCACTTCATATCGCACCACAGTGCCAAGCCGGGCAAGACCGCTTGCAAGATATGCTTCGTGTACACGGACGACTCGCAGCTCGAGTCTCACACGAGGAGCCACTATATGCGTCACACGTGCAAAACTTGCGGCAGGGTGGAGTACAGCGAGCAACTGATCGAGGTGCACGTGAGGACGCACAGGGAAAGTCAGGTGCCGAGCGCAGCGATCAAGATCGGCACGGGCAAGGGTAGGACGAAGAACGATCAGTATATAATGTCGATGAAGCAGCCGAAGTCGGGAGATCTCAGGAGACTGCTGTCCAAGACCACCATAGAGGGATACCAGTGCTTGGAGTGCGACATGTTCTTCAAAAACTCTCGGGCGAGAAAGAGTCACGTAGCGCGATACCACAGGGAGGGGTTCCAGTGTGACCACTGTAAAAAAAGATTCGTCAACAGGACGACGCTTGTGACGCATTTGAGACTCCACGAAGGTCCGCTGCCCAGGGAGGAGTGCCCCATATGCCACAAGATGGTGCGCGTGATCCAGCTGAAGTACCACGTACAGCGGCACCAGAACAAGTGTCGGTACGAGTGTAAGGAGTGTAACAAGGTAGGCAAGGAGTGTAATGAGCGTAACAAGTGTCGGTACGAGTGTAAGGAGTGTAACAAGGTAGGCAAGGAGTGTAAGGAGCGTAACAAGCGTCGGTACGAATGTAAGGAGTGTAACAAGGTAGGCAAGGAGTGTAAGGAGCGTAACAAGCGTCGGTACGAATGTAAGGAGTGTAACAAGGTAGGTAAGGAGTGTAAGGAGCGTAACAAGCGTCGGTACGAGTGTAAGGAGTGTAACAAGGTAGGTAAGGAGCGTAACAAGCGTCGGTACGAGTGTAAGGAGTGTAACAAGGTAGGTAAGGAGTGTAAGGAGCGTAACAAGTGTCGGTACGAGTGTAAGGAGTGTAACAAGGTAGGCAAGGAGTGTAAGGAGCGTAACAAGCGTCGGTACGAATGTAAGGAGTGTAACAAGGTAGGCAAGGAGTGTAAGGAGCGTAACAAGCGTCGGTACGAATGTAAGGAGTGTAACAAGGTAGGCAAGGAGTGTAATGAGCGTAACAAGTGTCGGTACGAGTGTAAGGAGTGTAACAAGGTAGGCAAGGAGTGTAAGGAGCGTAACAAGCGTCGGTACGAATGTAAGGAGTGTAACAAGGTAGGCAAGGAGTGTAAGGAGCGTAACAAGCGTCGGTACGAATGTAAGGAGTGTAACAAGGTAGGTAAGGAGTGTAAGGAGCGTAACAAGCGTCGGTACGAGTGTAAGGAGTGTAACAAGGTATTCTCACATATGGCCACTTACCGAGCACATTACAAGTACAGTCGGGCTCATGCCACGGAGAGTGTTTTTAAGTTTCCGTGTCCGATGTGCAATAAGGCGTATCCGAGCAAGGAGTCGATGCAGGACCATTTCAACTATCAACATCTCGGCAAGACCTCGCACAAGTGCCCCGTTTGCGATAAGCCAATTGCGTCGCGCGCGAACGTTGAAAAGCACATGCTGCGGATGCACGGACAGAAGAAACAGAAGCCGCGGAACCACGTGTGTGTTGTCTGCGAGAAGGCGTTCACGGTGAGTCCATTAGTGTCGCAGACACGAATCTAA
- Protein Sequence
- MEVQHEYSTICTTCLSSGRDLYSLTGSDGVYHVFRLLMHDFADDRFGESIINLDQLVCWECYALMKRFIRFKSQVHSAQEHLRILAMSRAQETMDHTYISQSLSSLEITNKNDYDNIYLYYTEDEWPQTFIVNEDDVKNEQFDLAQATRENLALDIDEHILEVPEMVLENPLTGVMSRVVVDTDALVSTAGSFKNISLSPDETTQVQMMCQKSNNPTTIKIETRRDGYNTESLSETDMLNVREEMKNKVQYASTAYKCELCIIGFYTQQQVEDHFISHHSAKPGKTACKICFVYTDDSQLESHTRSHYMRHTCKTCGRVEYSEQLIEVHVRTHRESQVPSAAIKIGTGKGRTKNDQYIMSMKQPKSGDLRRLLSKTTIEGYQCLECDMFFKNSRARKSHVARYHREGFQCDHCKKRFVNRTTLVTHLRLHEGPLPREECPICHKMVRVIQLKYHVQRHQNKCRYECKECNKVGKECNERNKCRYECKECNKVGKECKERNKRRYECKECNKVGKECKERNKRRYECKECNKVGKECKERNKRRYECKECNKVGKERNKRRYECKECNKVGKECKERNKCRYECKECNKVGKECKERNKRRYECKECNKVGKECKERNKRRYECKECNKVGKECNERNKCRYECKECNKVGKECKERNKRRYECKECNKVGKECKERNKRRYECKECNKVGKECKERNKRRYECKECNKVFSHMATYRAHYKYSRAHATESVFKFPCPMCNKAYPSKESMQDHFNYQHLGKTSHKCPVCDKPIASRANVEKHMLRMHGQKKQKPRNHVCVVCEKAFTVSPLVSQTRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -