Basic Information

Insect: Schoenobius gigantellus
Gene Symbol: -
Assembly: GCA_963935595.1
Location: OZ012546.1:11981683-11988092[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.52 1.3e+02 5.4 3.2 2 22 198 218 197 218 0.94

2 16 2.7 6.9e+02 3.1 1.0 1 23 318 340 318 340 0.82

3 16 5.4 1.4e+03 2.2 0.2 1 21 346 366 346 367 0.83

4 16 0.41 1.1e+02 5.7 0.3 2 23 478 499 477 499 0.96

5 16 0.031 8 9.2 0.6 3 23 576 596 574 596 0.96

6 16 0.067 17 8.2 0.6 1 23 604 626 604 626 0.97

7 16 0.073 19 8.1 3.8 1 23 658 680 658 680 0.95

8 16 0.00019 0.048 16.2 4.0 1 23 688 710 688 710 0.99

9 16 0.4 1e+02 5.8 2.2 1 23 789 811 789 811 0.98

10 16 0.12 31 7.4 0.1 2 23 896 917 895 917 0.95

11 16 0.02 5.1 9.8 0.3 1 23 985 1007 985 1007 0.92

12 16 0.0081 2.1 11.1 1.8 1 23 1013 1035 1013 1035 0.96

13 16 0.0053 1.3 11.7 2.6 1 23 1123 1145 1123 1145 0.97

14 16 0.00013 0.034 16.7 1.4 1 23 1151 1173 1151 1173 0.99

15 16 0.25 63 6.4 2.0 1 23 1263 1285 1263 1285 0.96

16 16 0.2 50 6.7 4.1 1 23 1296 1318 1296 1318 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.52	1.3e+02	5.4	3.2	2	22	198	218	197	218	0.94
2	16	2.7	6.9e+02	3.1	1.0	1	23	318	340	318	340	0.82
3	16	5.4	1.4e+03	2.2	0.2	1	21	346	366	346	367	0.83
4	16	0.41	1.1e+02	5.7	0.3	2	23	478	499	477	499	0.96
5	16	0.031	8	9.2	0.6	3	23	576	596	574	596	0.96
6	16	0.067	17	8.2	0.6	1	23	604	626	604	626	0.97
7	16	0.073	19	8.1	3.8	1	23	658	680	658	680	0.95
8	16	0.00019	0.048	16.2	4.0	1	23	688	710	688	710	0.99
9	16	0.4	1e+02	5.8	2.2	1	23	789	811	789	811	0.98
10	16	0.12	31	7.4	0.1	2	23	896	917	895	917	0.95
11	16	0.02	5.1	9.8	0.3	1	23	985	1007	985	1007	0.92
12	16	0.0081	2.1	11.1	1.8	1	23	1013	1035	1013	1035	0.96
13	16	0.0053	1.3	11.7	2.6	1	23	1123	1145	1123	1145	0.97
14	16	0.00013	0.034	16.7	1.4	1	23	1151	1173	1151	1173	0.99
15	16	0.25	63	6.4	2.0	1	23	1263	1285	1263	1285	0.96
16	16	0.2	50	6.7	4.1	1	23	1296	1318	1296	1318	0.98

Sequence Information

Coding Sequence: ATGGGCTTATTGAATGCTGAGAAGGATATTGTGAGCTGCCATAGTGATTCCAACGACGCTGACGCATCAGACAATGGTATCAAGAAAGAAACTGTGCCATCGCCAACAGATATGCAAAGTCAATTATCTCCAAACAGTTCCACAGATGATTCAAAATTTCAGAAACAAATCCGAAAACCTCCTAGACCTTTGCCGCCTCTTATACCGCTGCACGTCTCTACTCCGAATCAAAACAAAACTTTAGCCGGAGAACCACCATGTAAAAAATTTAAAGATTCTCCGAATTCAGAAGTAATAGAGCCTAACAAAGTGAATGCATACGATCATTTGCCTGTCGATATCAGTATTGTACCAGTAAATGCAAATAATTCACATAGCAAAGAGTCCGGTACACGTAAGAAGAATGAATCATTTTTTGATAAGCTCAAGGAAAGACTATTAACAGAGACAGGTGAGGAGGGTTCTCTTAAATGTAAAAACTGTGGTTTCGAAAGCAAATGTCTATCAGAACACTCGGTACATGAAAAGAATTGTACTTCACAACTAAATCGCACGGCATCCAACACACTGCATCCTAATTTGAGTTCAACGAGATGCCAAAACTGCAGACACAGGTGCAAATCTAGCGCAGATTTGTATATACACTTGCAAACATGTCAGAAAAATGACAAAGTAGATGATGATGTAGTAACCATGgacattaaaaatcaaaacagtaACGAAGAAGTCAAATCTATACAAGAAAAAGAATCCGAACCACATCCTATGGAAAATGTTGTATTTGTGTGGAATAATATAAACCATAGTGAAAATAAGTATAATACACCCCTTGATATAAATATCAACGATGACTCCACTATGCCCGATATAAACAGAAGTTATGAAATAGATGCGCCTGATGACAATGACAGCATGAATTTGTCTCCTAGCCAAGCCATaggaaaaaaagtttttaaatgtcCTCATTGTCCTTTTTGGGCTTCTACTGCATCTCGCTTCCACGTACATATAGTGGGACATTTGAATAAAAAGCCATTTGAATGCTCTATCTGTAAATACAAGTCTAATTGGAGGTGGGACATTACGAAACATATAAAGTTGAAATCAGCTCGAGACCCTGAACACAATGAGGCTAAAGTCCTAATGACAGATGAGACTGGGCGCAGAAATTATAGTAAATACAATCAGTTTTTAGCTGTGTCAATGCTAAATGAAAAGGGTGAAAATGTATTTCATTATTTAGATTTGAATGCTTCTCCTGATTCCATGATGGAAATTGACGAACACTTCGCCTTGAATAATACACATGATAGTATTAACCGTTCAACAGAAATGCAACCACTTAATTTGCAAACGCACAATATTGAACAGAAGTATGAATCAATGGATATTCGACTTATGGATGTCAAGAAACCCAAAAGAACTTTATGGAAATGTAAAAAGTGCAATTACAGAGACCCTTCAAAGGAAGCCCTATTGGAGCATGTACGTGAACATGCCAAAGTAGATGCAAACCAGGATGACAGAACTCCCAAAAAAGTAGAAACCCCTCCAGATCCAGCTGACTTGGCATATCGATGCGGTCATTGTAATCAGCTGTCGAACTGGAAACATGTAATTCAGAGACATTGTCGCCTCAAACACAACGGCATAATAAAAGTGATAACGACAGTAAAACCCAAGCCAGACTTGTCGGTCTTCATGAACGATATCAGCGGGGATAACTGCACCAAGTGCCCCTTCAGATCCACTGACAAAAAGTTGCTGCTAGCACACGTGCAGCAGCATCAACCATCAGCACAAtccatttttaaatgttttttctgTCCTTTCTTTGTTAAAGATGAAAATGAGTTGATACAACATTTACTCCTACACGGTATTACCGAACCAGAAGAATATATAGCTAACGCCATAGGACGCAAATCCCCCCTGGCTGAAGTGAATATGCACAGCGCGTCTACTAAGCGCCACAAATGCACAGAATGCCCATACGAAACTAATAGTAAATCTCAGTACACGTATCATGAGCAATTTCACAGGCTATCGGCAGATACACCATACAAGTGCCCCGAATGCAATTATAGTGTATCTAAAAGACATTTATTACACCAACACCTGAGAGTCCATGGAATAATATCGAAAAAAATAGAACCTGAAATTGAATTGGAATCGAAATTAGATCCCAAAATTGAGTTTTCTATCAACCTAGATGAGATTCCATTTGTTTGGGTGTCAGCGAAAAACGAATTTcataaaatgtataaatgtCGCTACTGCTCATATGTCAATTCGCAAAAATGCAAAATTCCTAACCATGAAAAAATTCATTGCATCACAGTCGACAATTCTGAAGTTACAGTGTTTAAATGTttagaatgtaaatttacaTGCGATAATGCAATTAGGCTAGCGGAACATTCAAAAACACACGGAGAAATATACGGTCGTATTTATTGCCCTGTTGAGGACGACATTCCAGATGAGGAACAAATAGCCAAGCTGAGGAAAGTTATTGAAAGTGAAAAGCCAAATGTATCAGATGGTTCAGTTAAAGAGGAAAAAGTTACTAATGAAAAGaatgaagtaaaaatattgtactTTTGCCAAATGTGTCCATCTCGATTTTTAAATGGCGATGAACTTAAATCGCATGataaatttcatgatttatcATTTCCGAATAAGTGTAATCAGTGCCAGTTTTCAGTGCCGACAGAAAATGATTTAAATGAGCATGTTGTTGTTCATTCAGATGAGTATCACACTAAAACGAAAATGCTCAAGTTTATGCACAATTCTCATGCTTCACACACACAACCCAAACTTGAGCTTGTTCATTGTCCTAGTACATCAGAAATCTCATGGATTGTTCCAAATCCCTGTAAAAATTATGATCCTAAATCAAATGTTCATAAAAAATCTACTGAAACAAAACATACACCAAAACAATATTTGTGTAAGGAGTGTCCAGCGAAATTCTTCAAAAGCTCAGCTTTGAACTACCATGCGGCACTTCATGGAGGAGAAGGTGACCACAAGTGCAAAAAATGTAGCTATACCGTTAAGAATATTGGCAATTTGGCGAAACATGAATTATTGCATGAAAGTGAAGGGAAACCATGTGATTATGAATCCGGCGATGATATGGACTATAAAAATATTCCCTTGTCAGGTACAGATTTATTTCAAAGAAAGACTGAAGCCCAAAAGAGAGTACTTAATGACAAAGATAAATTAGTTAAGCCAAATGACCATTTTCCCCCTGTTTTACAAGCTGATCCCCAATTTGGATACTTAATGCATGGCAATCCAGAATTTATTTATCCGActtatttgaaaaatggtcgACAGAAGGAAAAACGTTATAAATGTCATAAATGTCCGTCTGCTTTTGAGAAACGAGAACAATATAAGATTCATTTGTCCTTACACGGTTCCAAACAAAGATATAAATGTGAACTTTGCGATTATTCTGTGAAATACTATGCAAATTACGTCCAACACATGAGAAAACATCAAATGAATGATGAAGCAATAGCGGAGAGAAAGAAAAACTCTAGTGGTGTGGTGGAACCAGACTGTCAAGAAACTAAGCAAGAAGACAGTGATAATATAAAACTTGCGATAAAAACTATGCCAAAAGGTGTTCCTAAAAGTGACTTTCAACAGTTTTCAGTTCGTGACCAACAAACACTTCGACTTTTGCAGCGCAGACGATCCTTAAACAATAGCAAAGATCAGTCATCCCCAACAGAACCGTCTCCTGCCAAGGAACGCAAGTTACATATGTGCTTGTTATGCCCATATACAAATCAAAGACAAGATGCACTTAATAATCACTACAGAAGACATGACGATACAGATGTTCTCAATACAGGAAGTCACAAATGTTCTTATTGTGACTTGGTAGTATTACAGTCTCATTTTCTTCGTGAACATCTGAAAACACACTTTTGCtatcaaaaaaatcttacaCCAGAGTGTTATGTTGCTAATGAAGACGTGAGTTTTACTATGACTAACGAAGATGACGAAACATCATGTGATCTCAAATTAGAAATAGATATACAAAATGAAGATTTTAAgtgcaatgaaaataaaatatttgtgaaaaTCCAAACAGGAGAGTTAGTTGTAGAATAA
Protein Sequence: MGLLNAEKDIVSCHSDSNDADASDNGIKKETVPSPTDMQSQLSPNSSTDDSKFQKQIRKPPRPLPPLIPLHVSTPNQNKTLAGEPPCKKFKDSPNSEVIEPNKVNAYDHLPVDISIVPVNANNSHSKESGTRKKNESFFDKLKERLLTETGEEGSLKCKNCGFESKCLSEHSVHEKNCTSQLNRTASNTLHPNLSSTRCQNCRHRCKSSADLYIHLQTCQKNDKVDDDVVTMDIKNQNSNEEVKSIQEKESEPHPMENVVFVWNNINHSENKYNTPLDININDDSTMPDINRSYEIDAPDDNDSMNLSPSQAIGKKVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSICKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYNQFLAVSMLNEKGENVFHYLDLNASPDSMMEIDEHFALNNTHDSINRSTEMQPLNLQTHNIEQKYESMDIRLMDVKKPKRTLWKCKKCNYRDPSKEALLEHVREHAKVDANQDDRTPKKVETPPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHNGIIKVITTVKPKPDLSVFMNDISGDNCTKCPFRSTDKKLLLAHVQQHQPSAQSIFKCFFCPFFVKDENELIQHLLLHGITEPEEYIANAIGRKSPLAEVNMHSASTKRHKCTECPYETNSKSQYTYHEQFHRLSADTPYKCPECNYSVSKRHLLHQHLRVHGIISKKIEPEIELESKLDPKIEFSINLDEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCITVDNSEVTVFKCLECKFTCDNAIRLAEHSKTHGEIYGRIYCPVEDDIPDEEQIAKLRKVIESEKPNVSDGSVKEEKVTNEKNEVKILYFCQMCPSRFLNGDELKSHDKFHDLSFPNKCNQCQFSVPTENDLNEHVVVHSDEYHTKTKMLKFMHNSHASHTQPKLELVHCPSTSEISWIVPNPCKNYDPKSNVHKKSTETKHTPKQYLCKECPAKFFKSSALNYHAALHGGEGDHKCKKCSYTVKNIGNLAKHELLHESEGKPCDYESGDDMDYKNIPLSGTDLFQRKTEAQKRVLNDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAIAERKKNSSGVVEPDCQETKQEDSDNIKLAIKTMPKGVPKSDFQQFSVRDQQTLRLLQRRRSLNNSKDQSSPTEPSPAKERKLHMCLLCPYTNQRQDALNNHYRRHDDTDVLNTGSHKCSYCDLVVLQSHFLREHLKTHFCYQKNLTPECYVANEDVSFTMTNEDDETSCDLKLEIDIQNEDFKCNENKIFVKIQTGELVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01334403;
90% Identity: iTF_01334403;
80% Identity: -