Basic Information

Insect: Schoenobius gigantellus
Gene Symbol: ush
Assembly: GCA_963935595.1
Location: OZ012546.1:4503585-4507425[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0071 1.8 11.3 0.2 1 20 140 159 140 161 0.94

2 9 8.8e-05 0.022 17.3 0.9 1 23 199 221 199 221 0.98

3 9 0.068 17 8.2 0.3 3 20 252 269 251 271 0.93

4 9 0.02 5 9.9 3.9 2 21 511 530 510 531 0.95

5 9 0.0059 1.5 11.5 0.2 3 20 560 577 558 579 0.90

6 9 1.2 3.1e+02 4.2 0.0 2 23 607 628 606 628 0.94

7 9 0.0086 2.2 11.0 1.3 1 23 634 656 634 656 0.99

8 9 0.35 90 5.9 0.6 1 23 697 720 697 720 0.95

9 9 0.059 15 8.4 0.8 2 20 753 771 753 773 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0071	1.8	11.3	0.2	1	20	140	159	140	161	0.94
2	9	8.8e-05	0.022	17.3	0.9	1	23	199	221	199	221	0.98
3	9	0.068	17	8.2	0.3	3	20	252	269	251	271	0.93
4	9	0.02	5	9.9	3.9	2	21	511	530	510	531	0.95
5	9	0.0059	1.5	11.5	0.2	3	20	560	577	558	579	0.90
6	9	1.2	3.1e+02	4.2	0.0	2	23	607	628	606	628	0.94
7	9	0.0086	2.2	11.0	1.3	1	23	634	656	634	656	0.99
8	9	0.35	90	5.9	0.6	1	23	697	720	697	720	0.95
9	9	0.059	15	8.4	0.8	2	20	753	771	753	773	0.92

Sequence Information

Coding Sequence: ATGAGGGGTCCGTTAAGTTTTTGTTCTGTTTGCCCCGGGCTGGATCACGTTCGCGATATTGATGGACGAGTATCGTCGCGACCGGTTCGTATTGACGTTTCTGAATTCGGTGAAGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCAGGAGAACCACGCACGCCGAGCTCTGCGGGTGACAGAGCGGCTTCGAGTAGGGGCGCTTCGCCTGCTTCGAGAGATTCACCAGAGGCCTCTCCGCCACGGCTGCGCCTTAACACAAGCTTAGCGACGGACCCAGCGCTGGCTCCACAAGCTACAGCTCTCAAGCATGAACCTCCATCCCCttcgccaccaccgccaccgcTGCCACAAACGAGAGACTACCTGGCACTGTCGGCAACATTCCCTCTGTTTCCGGCTACCGCCCCTGGATATATTTGTAAGCCATGCGGTATACGCTATTCCTCCCTGAGCACTCTTCAAGCTCATCAAGAACATTACTGCTCAAACAGAAGGCCTAAAACAGCGGAGGGGTCTGATAGCCTCGCAGATGCCACGGTAGACGAGTCTAGTAGCGAAGCAAAGACTCCTCGCCCCCCTGGCAAGCAATATGCATGCACTTATTGCTCATATAGCGCTGATAAGAAAGTGAGTCTAAACCGGCATATGCGAATGCATGCATCGTCTCCTGTGAGCAGTGGAACTCCAGTACCGACACCAACCTCTAACGGTGAAATTAGCGATGGCCCACCCGCCCAGGATCGTTATTGTGCAGACTGCGATATACGTTTTAGCTCAATCAAGACCTACAGGGCTCACAAAGCTCACTATTGCAGTACTAGACAAGTTGTGAAACAGGCACTGGCTGCTGCGAGATCGGGCTCTGCTACATCAGGATCAGCGCCGCCGTCCCCGGGAGCCACACCGCCAGCGCAAGCTCAATATGCGTTGGCATTACCAACGAATCCAATTCTCATAGTACCCTATTCCCTGTTTCGAAGCGCAAGTACACTTCCGGGGACTACTTTGCCCGATCCCGACACACCCTGCTTTTTGTTACCGAACGGAACATTTCAGCCACTTAGCCGCGCCTTGCCGAATATGAACACTGAAGTTAAAGAAACGGAGGTTCTTAAATCCGCAAACAGGCCCCGGGAGCCATCTCGAGATGGAGCTACGCCACTTGATTTAAGTGTTCGGAGATCGCCAGAATCTGTTACTACTGATGAACATGAAAAAGAAAACAGGTTACGATCCACAACACCTGAGCAAATCGTATGCGCCCCCTCTTTGCCAGGCTCGCCAGGCACACCGTCACCTTCTCGGAGGTCGTCATCGCCGAGTGCAGACAGCTCTCCGAAGAGACGGCGACTAAATTCCAGAGGACCAACGCCAAAACCACCTAGTGTGCCTTCGCCGCCGGAAGAAAAGTACACGCCAGTGGTGACACCAGCGAAGATCCCGACGGCTCTTGCGCTGCGGCTTGCGTCTGAACTGCCAGTTACGGCGGCATCACCTCAAGTGCTAGTCAAACAAGGAGTTTCGAAATGTAAAGAGTGCAACATCGTTTTCTGCAAGTACGAAAACTACAGGATCCACAAGCGGCATTACTGCTCCGCCGGCGGAGGTGAAGAGAGAGCGAGTCCCGCGCCGCCGGAGCCGGGGCCGCCGCCGCAGTACCGCCAGCTGATTTGCCTCGCTTGCGGCATCCATTTCAGCTCCCTAGATAATTTGACGACTCACCAGTCGTATTATTGCACGAAAAGAGAGACGAGGTCCCCTCGGTCGGTGCCCGAGGTGCCGCGGCAGGTGACGGGGTCGGACGGCGGCTGGAAGTGCCCGTGCTGTGACGTCGTGTCgccgacggcggcggcggcgcagcgGCACATGGAGGCCCACGCCGGCGTCAAGGCGTTCCGGTGTACCATCTGTCGGTACAGAGGCAACACGCTACGAGGCATGCGCACCCACATACGGATGCACTTCAACAACAAGAAACCTTCAGATATGCAGGAGGAGAGCTACATAGCGTGCGTGCTAGAAGAGGACAGCCGCGAGGTGACGTCGCCGAgcccggcggcggcggtgggggGCGAGCGCGTGCACCGCTGCGGCAGCTGCGCCTACACGTCCACGTACCGCGGCAACGTGGCGAGGCACGCGCGCCTCGTCCACCCCGCCGACGACGCCGAACCCGAGGACCAACCCGCCCCGATACCCCCCGCCGACATCAAGAAGGAGCCGGACGCGGAGGCGGAGGAGACCCCCAACTACTGCAAGACCTGCGACATCTCCTTCAAGTACGTCAACACGTACAAGGCGCACAAGCAGTTCTACTGCAAGGCCACCCAGGAGACCGCCAACAACAACGTCGCCGCCGTCCGCGTTACCGACACTCCGGTGCTGTGA
Protein Sequence: MRGPLSFCSVCPGLDHVRDIDGRVSSRPVRIDVSEFGEDEEWGNESEAMPGEPRTPSSAGDRAASSRGASPASRDSPEASPPRLRLNTSLATDPALAPQATALKHEPPSPSPPPPPLPQTRDYLALSATFPLFPATAPGYICKPCGIRYSSLSTLQAHQEHYCSNRRPKTAEGSDSLADATVDESSSEAKTPRPPGKQYACTYCSYSADKKVSLNRHMRMHASSPVSSGTPVPTPTSNGEISDGPPAQDRYCADCDIRFSSIKTYRAHKAHYCSTRQVVKQALAAARSGSATSGSAPPSPGATPPAQAQYALALPTNPILIVPYSLFRSASTLPGTTLPDPDTPCFLLPNGTFQPLSRALPNMNTEVKETEVLKSANRPREPSRDGATPLDLSVRRSPESVTTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSADSSPKRRRLNSRGPTPKPPSVPSPPEEKYTPVVTPAKIPTALALRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRSVPEVPRQVTGSDGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPSDMQEESYIACVLEEDSREVTSPSPAAAVGGERVHRCGSCAYTSTYRGNVARHARLVHPADDAEPEDQPAPIPPADIKKEPDAEAEETPNYCKTCDISFKYVNTYKAHKQFYCKATQETANNNVAAVRVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_01334332; iTF_01334338;
80% Identity: -