Sgig073752.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012564.1:4462497-4483403[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00018 0.045 16.3 1.6 1 23 191 213 191 213 0.98 2 10 0.045 12 8.7 3.7 1 23 220 243 220 243 0.94 3 10 2.9e-05 0.0073 18.8 3.2 1 23 274 297 274 297 0.98 4 10 0.01 2.6 10.8 3.8 1 23 301 324 301 324 0.93 5 10 0.58 1.5e+02 5.3 2.4 2 21 339 358 338 363 0.91 6 10 0.073 19 8.1 0.1 2 23 372 392 371 392 0.94 7 10 0.00035 0.089 15.4 0.4 2 23 413 435 412 435 0.96 8 10 1.4e-05 0.0036 19.8 2.0 2 23 445 466 444 466 0.97 9 10 2.2e-05 0.0057 19.1 0.5 1 23 472 494 472 494 0.98 10 10 2.1e-06 0.00055 22.3 0.5 1 23 500 523 500 523 0.96
Sequence Information
- Coding Sequence
- ATGAGGCCTGTAACAGTCTGCTACATCTGCTTTTATCAGTTAAAAAAGATGAAGAAATTCATTGACTTGATTCAAAGAGCTGACCAGCTATTGGGGCAAATGGTGAATTCAGGACTTGAGATGACACAAAATTCAATAGAGACAATAGACAAACAATCGTACAATATCACTCATGCGCTGAACACATGCTCCGTGCTTAACATTAGCAATATGAGCAATATAGTCTTAGAGATAAAACTTGAAGCGCCAGAAGAATGCAAAAATGTCAAGAAAGAAGAGGAGATCAACACAGTTGAACCGGTCAGCGGTGAGGAagATGAAGAACATTACTCAGACGCTCCAGTGAACGATACCACAGATTCAGAAGACGACGTCCCATTGCAGAGTATAAGTGAAAAAAAGAAGATTCCGAGACCGAAAGAGCCGCTGAAAATTGTTAAGAAGGATGGTGTAATAAAGGGATTAAAAACGAAAGTCAAACCCGACGCTAGAGAGATAGCGCTGACCAAAGAGGAGCAAATTCAGAATCTGTTGAAAAGATCGAAGAGTGACAACTACCTCCACTCACCGTACAAGTGCCAGCTGTGTTTCAAGGGGTTCGCTGACCCGAGAACCTTCGAGAAGCACCGAGAGAAACATGATAAGAGCAGCGGTGACTATGAGTGCGACATTTGCCATATGCGTTACCTGACTCCGCGACACCTGCGCACGCACACGACCAACTCCCACTCGAGACAGTACGCGTGCAACAAGTGCGACAACCGATGCCATACTACaaACCAAGCCTTGATCCACGAGAAATGGCACAGCGGGTTTTTGTATGAGTGCCAATTGTGCGGTCACACGTTTAGAAAACCTACGTCGTATCTTAGTCACATGCGCAAGAGTCACCCCACCGAACACATATGTAATATATGCGGGGAGTGCTTCGTCGGAAGGCACGGGCTGCTGATGCACAAGACGAAAAGTCACAAACCCGCGGACGAAgtTAAATCTCAAGGTGACTCCACAAAATATTGCTCGGAGTGCAACATGCATTTCATGTCGCTAGAAGCTTGGTGTAAACACGTTTTGAGTTCACTGAAGCACACACTGTCCAATGATAGCagGTCAACGTGTCTGGTCTGCGGCTTGGAGTTACCATCGGCAAACCTGAAAAAGCACCTCCTCACCCACGAAAGTATCATACAACCAGCGCCAGACAACAAACGCGTCAAGAAGACGCTGCACAAAGTGCCTTGTCAAATGtgCGGCACGGACTTCGCGAGTCACATCAAACTCCAGGCGCACATAAAGAGAATGCATCTAGGCATGAAGTATGACAAGAACATCGTTTGCGAACTGTGCGGGAAGAAGTGCAAGTCAAACGCGTTGCTAAGATACCACCAGCGCACGCACACAGGCGAGAAACCTTACGAATGCTCCGCGTGCGGAAAGAGGTTCACAACGCAGAACCAGATGATTGTGCACAGCAGGGTTCACTCGGGCGAACGACCGTACGCGTGCGGCACCTGCGATAAGCGGTTCTCGCAGAAGGCGGCGCTGAACAGGCATTCCAGGGTGAGTCACGGGAGTCAcgatttttttatagtgggcttAGCAAACGaccccattccacctgatgatGAGTGGGggtggggtccaaatgcgaagacagctagtgcagcagagagaatacacgcggCACTAGCCACCGTCACCCAGAGGGagggaacacgtgtgctggcagtcatcaccacagcccatatacgtccccaccgaggggctcgagcctaccctatattagggtga
- Protein Sequence
- MRPVTVCYICFYQLKKMKKFIDLIQRADQLLGQMVNSGLEMTQNSIETIDKQSYNITHALNTCSVLNISNMSNIVLEIKLEAPEECKNVKKEEEINTVEPVSGEEDEEHYSDAPVNDTTDSEDDVPLQSISEKKKIPRPKEPLKIVKKDGVIKGLKTKVKPDAREIALTKEEQIQNLLKRSKSDNYLHSPYKCQLCFKGFADPRTFEKHREKHDKSSGDYECDICHMRYLTPRHLRTHTTNSHSRQYACNKCDNRCHTTNQALIHEKWHSGFLYECQLCGHTFRKPTSYLSHMRKSHPTEHICNICGECFVGRHGLLMHKTKSHKPADEVKSQGDSTKYCSECNMHFMSLEAWCKHVLSSLKHTLSNDSRSTCLVCGLELPSANLKKHLLTHESIIQPAPDNKRVKKTLHKVPCQMCGTDFASHIKLQAHIKRMHLGMKYDKNIVCELCGKKCKSNALLRYHQRTHTGEKPYECSACGKRFTTQNQMIVHSRVHSGERPYACGTCDKRFSQKAALNRHSRVSHGSHDFFIVGLANDPIPPDDEWGWGPNAKTASAAERIHAALATVTQREGTRVLAVITTAHIRPHRGARAYPILG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -