Basic Information

Insect: Schoenobius gigantellus
Gene Symbol: -
Assembly: GCA_963935595.1
Location: OZ012550.1:30715717-30723503[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.9 1e+03 2.6 6.2 1 23 1249 1271 1249 1271 0.96

2 10 0.054 14 8.5 0.9 2 23 1298 1320 1297 1320 0.95

3 10 0.00029 0.073 15.7 0.2 1 23 1343 1365 1343 1365 0.98

4 10 0.00013 0.033 16.7 0.5 1 23 1369 1392 1369 1392 0.97

5 10 0.019 4.9 9.9 1.2 1 20 1397 1416 1397 1420 0.83

6 10 0.096 25 7.7 1.8 1 23 1426 1449 1426 1449 0.90

7 10 2.6e-07 6.6e-05 25.2 2.7 1 23 1456 1479 1456 1479 0.98

8 10 0.0045 1.1 11.9 3.0 1 23 1485 1507 1485 1507 0.97

9 10 2.2e-06 0.00055 22.3 1.0 1 23 1513 1535 1513 1535 0.99

10 10 0.00025 0.063 15.8 2.1 1 23 1541 1563 1541 1564 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.9	1e+03	2.6	6.2	1	23	1249	1271	1249	1271	0.96
2	10	0.054	14	8.5	0.9	2	23	1298	1320	1297	1320	0.95
3	10	0.00029	0.073	15.7	0.2	1	23	1343	1365	1343	1365	0.98
4	10	0.00013	0.033	16.7	0.5	1	23	1369	1392	1369	1392	0.97
5	10	0.019	4.9	9.9	1.2	1	20	1397	1416	1397	1420	0.83
6	10	0.096	25	7.7	1.8	1	23	1426	1449	1426	1449	0.90
7	10	2.6e-07	6.6e-05	25.2	2.7	1	23	1456	1479	1456	1479	0.98
8	10	0.0045	1.1	11.9	3.0	1	23	1485	1507	1485	1507	0.97
9	10	2.2e-06	0.00055	22.3	1.0	1	23	1513	1535	1513	1535	0.99
10	10	0.00025	0.063	15.8	2.1	1	23	1541	1563	1541	1564	0.95

Sequence Information

Coding Sequence: atggcggacctgaacctcgccactcaatcagttgcaaaggaagaggtgcagtttgatcacctcactgacctgcaagatcagttcgtgtacaagaacgcgaaacctcgcattctcatcggatccgataattggccgctgattgttacccgaaaactgcgcgtgggcaaacggaacgagcccgcggcatcccgaacggaactcggatgggtggtgcacggaacggcaccgaccaaagtaataatcaagcgccaagatgaagtgctgcacgtgtggacgcaagacatcgaacggcaggtcagcgagcactttcaattagaatcgctgggaatctcgctgaagtcagcgcaCACGAGGACAGAGGACAAGCGAGCGTTGAGTATCTTTGAGTTCACCGTCAAACGGGTCGACGGAAGATACGAAGTAGGACTGCCGTGGAGAGAAGATGACGTCGAGTTGCCGCCTAGCTACAACGCGGCATTGAAAAGGCTACGGCACTTAGAGACGCAGCTAGAACGCGACCCGGACAGGAAAGCCGTATACTATAAACAAATGAAGAACCTCATCGAGAAGGGATACGCCAAGCCCTGCGACGGCACAGAATTGCAGAGTCCGATCGCATGGTTCCTACCGCATTTCGCCGTACGCAACCCGAACAAGCCCGGGAAGACCCGTCTAGTTTTCGACGCCGCTGCCAAGACGAATGGAGTATCATTGAACGACGCTCTTTTGGAGGGACCTGACCTTTTACAGTCCCTACCGAAAATACTGCTCCGATTCAGGGAAGGCAGCTTCGCAGTAACGGCGGACGTCGAAGAAATGTTTCTACGCATAAACATAAGAAGAGAAGACCAGCCCGCGCAAATGTTCTTATGGCGCGAAAACTGCGAAGAACCGCCCGTCAAAATGAAGATGACGGCTATGATATTCGGTGCATCAAGCTCACCGTTTCTCGCGCACAGCGTTCGGAACGAGAACGCACGGCAATACGCCGAGACGCATCCAGATGCTCTGAAATCAATCACAGAAGCACACTATATGGATGATTACGTCGAAAGCTTCGATCAACTAGAACAAGTAGcgagaacgatccaacaagtcgacgaagtgcacaaagaagctggcttcaacctgaaggggtggaatagtaacagcgcggaactcttgaagaacgtagagagtgaacgccgcgcgaccactacgctccttgggaagccggaaaaggcactgggcctcatgtgggacgcgcaagaggacacattgagcttcaacatcgcgttggctcgcgtcccgaacgaggtgaagacgcaacttcggccgccgacgaaaagggaagcactctcgacagtcatgagcatttatgaccctctcgggctgttgagctgttacactgctacagCGAAGATCGCGCTACAGAAACTTTGGCGGCTGAAGACGAGCTGGGacgagccagtccctcccgagattgcgtcgatgttcaaagactggcttacgagcctggaagccgtcggcagactgcgcttgccccggtcttacaacggggggagaaaagtaacgcgtcgcgaactgcacgttttctgcgacgcgagcgaagacgcatacgctgcggcggcatattgggtgcacaaAAACGAAGATGGCACCTCGGAAACGATCTTGGtctcggccaaggtgaaggtcGCGCCGCTGAAGACACAAacgattccacggctggagctacaggctgcgctcatcggagctaggCTCGCTCAAAGCGTTAAGGCGGATCACCGTATTCCCGTGGACGGAACCGTGTACTGGAGCGACTCGCAAACCGTGCTCCACTGGATAAGGAACGGGAGCAAGAAGTACTCACCGTTTGTGGCGTATCGGCTAGGCGAAATAACAGAGTTGTCACAGCCGACAGAGTGGCGCTGGATCCCGTCGGCGTTGAACGTCGCCGATATAGCCACTCGCTCAGGATATGTGCCGCAGGGACGCGACGACTTATGGTTTCGTGGCCCGGAGTTTCTGCGGGGGCCGAGGAGGCAATGGCCGCGCGATGAGAAAGCGACGCAAGAGAGCGTAGAGACAGCGTACACTATTTCCATCGAGCCGCACCCCTCGCTGCCGGAAGTAACGAGATTTTCGCGGCTTGAACAACTCATCGGCGCGACGGCCAACGTACTATACTTCATCGACCGCTGTCGACGCCGAGCTACAGAAAGAACCGTCGACCACAGCAGAAGAGCTGCCGAGTTGTGGCTAAAGCAGGCGCAACGAGAGAGTTTCCCGGAACTAATTGATCTTCCGGCTGATGCGAGGACGCCAAAGAACAGCGCCCTTAACCGCCTTGACCTGACCAGAGGCAGCGACGGGCTGATTCGGCTCCGCGGGAGAATTCGCCACGCTCGTCTGTCGACAAGAAACGATCCTGTGGTGCTCAACGGTCGACATGCGTTTACCAAATTGCTGATAGAGCGCGAACATCGTCGGCTAGGACACGCAAATCCCGAAGCCGTGGTGAACAATCTTCGGCAAGCATACTGGGTGACTAGACTGCGGCCATCGGTGAAGACAGTGGCGGGAGCGTGTCAAACTTGCCGCCTAAGAAGAGCGCGCCCTGTGACGCCGCCGCTGGGAGATTTGCCGCAAGAACGGTTGGCGGCCTATGAGCGACCGTTTTCGCGCTGCGGATTGGACTTCTTCGGGCCAATGATGGTGGCGATCGGGCGACGACGTGAAAAGAGGTGGGGCGCTTTGTTCACGTGCCTCACCACGAGGGCAATCCACATAGAACTGGTGGCATCGCTATCGACCGATTCGGCGATAATGGCCCTTAGGAGGATGGCCGCAAAGAGAGGGTGGCCCGCCGTCGTCTGGTCAGACAATGCCACTAACTTCCGTGGCTCGGACACGGAACTAAAAAGGGCTTACAAGGAGTGGCTTCCAGAGCTAAAGAAATTCGGCGCGAACTACGACTTAAGATGGAAATACATCGCGCCGGGAGCCCCGAACCAAGGTGGGGCGTGGGAGCGCCTTGTACGCTCAGTGAAGACTGCGCTGGGGGCTACTCTGCTCGAAAAAGCCCCCAGGGAAGAAACTTTAGCGACGCTGCTGGCGGAGGCCGAACATTGCATCAACGCAAGGCCGCTGACTCATGTCTCCGTCAGTAGTGAGGACGAAGAAGCGCTAACACCAAACCATTTTTTGGTGGGATCGTCAAGCGGCTTACCGATCGTCGGGCCCTGCGACGAAGCGAACCGCCACACCTGGAGGTCGGCACAAGCGCTGGCCGATCACTTCTGGCTACCTGTAGAGGACACTTTGGACTTAGACttcaatgtaaaaaaagaagATTCTAGAGTTAAAGATGAGCCCAGTATTGAAGAACATGACTCAATCGACAATGATCCTGATTATGAGCCTGACGAAGAATATTTGATGGATGGCGTTACTACAACAGAACCTACAAACACCGACCTAATAGATGGGGAGGAGGAGCTGCTCGCAAGATTCCCGCCGTTCAGATTGCCAACTCGAAGCACATTGCACCTTTACTGTGAAGAATATGCCAAGCATCTGGACAATCTGAATGGTATTGTGGTCCTGCCCAGTCGCATATTGAAGCTTCTAGAAGACGACGAAAAGAAATCAAACATGTCGAACACTCTGTACGTTACGGAGAAAACGGCGCACATAACTAACGCGTGCACTCTGTTAGAGTTTTCAAACATCACACCTTTTAAAAGCCGAAGTAGGAACGGATTTCCGTGTTTCTACTGTCGGAACCACTTTGAAAATTTGGATAGATTGAAGCAACACACACACCAACACAAGAAAAGCGAGCTGAGAAGAGTCCTAAGCACTTACGGCGCCGAATGCTTAGTTGTTTACGCTGACGTGACCGACTTAAGCTGCACCATATGTCACACAAGTCTGCCAAATATGAATGAGCTAAAACTTCATCTTACAAGAGAACACAAGAAGAAAATGTATTTGGAGTACAATGATCGAGTGATACCGTTTAAGCTGTCGCCTACTAACGTTTACGAGTGTCAAGTGTGCGGATTCAACTTTGAGACGTTCGGTTCGATAGAGAGACATATGAACGTGCACTTCAGGAACTACGTTTGCAGAGAGTGTGGCACAGGGTTTGTGACGAAATATAGGTTGAAGGTCCACGTAAAGAGTATGCATGTCGGTGGAAGTTTTCCATGCAACATCTGCAGTAAGGTATTCACGACCCAACAGAAGCACAAGAGCCACGTTGACGCTGTACACAAGATGGTGAAACGGTTCAAATGCAGCAAGTGCCCTGAGAGATTTTCAGAATACTTTAGAAGGCAGAAACATATGGTCGAAGAGCACGGGTTCGCCCCCCTAAAGTATAAGTGTAATGTCTGCGATAAAAGTTTCGATAGACGGTATACTTTGTCGCGGCATATGAAACGTGATCATCTCGAGGAAAGGGACTTTGAGTGTGATATGTGTTCATATAAGTGTTTCACAAACAATGAACTTAGAATACATATGATAAAACACATCGGTGAGAGGATATACGAGTGCGCTGTGTGTAAAAAGTCATATGCGAGGAAGAAAACGCTTAAAGAGCATATGAGGATTCATAACAATGACAGGAGATTCGCCTGCGCTGTGTGTGGACAAGCCTTTgtgcaaaaatgcagtttgaaaGGTCATCTGAAGACGCATCACCATGAATACGGTTTGTCAATTTGA
Protein Sequence: MADLNLATQSVAKEEVQFDHLTDLQDQFVYKNAKPRILIGSDNWPLIVTRKLRVGKRNEPAASRTELGWVVHGTAPTKVIIKRQDEVLHVWTQDIERQVSEHFQLESLGISLKSAHTRTEDKRALSIFEFTVKRVDGRYEVGLPWREDDVELPPSYNAALKRLRHLETQLERDPDRKAVYYKQMKNLIEKGYAKPCDGTELQSPIAWFLPHFAVRNPNKPGKTRLVFDAAAKTNGVSLNDALLEGPDLLQSLPKILLRFREGSFAVTADVEEMFLRINIRREDQPAQMFLWRENCEEPPVKMKMTAMIFGASSSPFLAHSVRNENARQYAETHPDALKSITEAHYMDDYVESFDQLEQVARTIQQVDEVHKEAGFNLKGWNSNSAELLKNVESERRATTTLLGKPEKALGLMWDAQEDTLSFNIALARVPNEVKTQLRPPTKREALSTVMSIYDPLGLLSCYTATAKIALQKLWRLKTSWDEPVPPEIASMFKDWLTSLEAVGRLRLPRSYNGGRKVTRRELHVFCDASEDAYAAAAYWVHKNEDGTSETILVSAKVKVAPLKTQTIPRLELQAALIGARLAQSVKADHRIPVDGTVYWSDSQTVLHWIRNGSKKYSPFVAYRLGEITELSQPTEWRWIPSALNVADIATRSGYVPQGRDDLWFRGPEFLRGPRRQWPRDEKATQESVETAYTISIEPHPSLPEVTRFSRLEQLIGATANVLYFIDRCRRRATERTVDHSRRAAELWLKQAQRESFPELIDLPADARTPKNSALNRLDLTRGSDGLIRLRGRIRHARLSTRNDPVVLNGRHAFTKLLIEREHRRLGHANPEAVVNNLRQAYWVTRLRPSVKTVAGACQTCRLRRARPVTPPLGDLPQERLAAYERPFSRCGLDFFGPMMVAIGRRREKRWGALFTCLTTRAIHIELVASLSTDSAIMALRRMAAKRGWPAVVWSDNATNFRGSDTELKRAYKEWLPELKKFGANYDLRWKYIAPGAPNQGGAWERLVRSVKTALGATLLEKAPREETLATLLAEAEHCINARPLTHVSVSSEDEEALTPNHFLVGSSSGLPIVGPCDEANRHTWRSAQALADHFWLPVEDTLDLDFNVKKEDSRVKDEPSIEEHDSIDNDPDYEPDEEYLMDGVTTTEPTNTDLIDGEEELLARFPPFRLPTRSTLHLYCEEYAKHLDNLNGIVVLPSRILKLLEDDEKKSNMSNTLYVTEKTAHITNACTLLEFSNITPFKSRSRNGFPCFYCRNHFENLDRLKQHTHQHKKSELRRVLSTYGAECLVVYADVTDLSCTICHTSLPNMNELKLHLTREHKKKMYLEYNDRVIPFKLSPTNVYECQVCGFNFETFGSIERHMNVHFRNYVCRECGTGFVTKYRLKVHVKSMHVGGSFPCNICSKVFTTQQKHKSHVDAVHKMVKRFKCSKCPERFSEYFRRQKHMVEEHGFAPLKYKCNVCDKSFDRRYTLSRHMKRDHLEERDFECDMCSYKCFTNNELRIHMIKHIGERIYECAVCKKSYARKKTLKEHMRIHNNDRRFACAVCGQAFVQKCSLKGHLKTHHHEYGLSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -