Sgig042420.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012550.1:28962357-28965521[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.89 2.3e+02 4.7 0.9 3 23 27 48 25 48 0.89 2 20 1.4 3.6e+02 4.1 0.8 2 23 72 94 71 95 0.91 3 20 1.2 3.2e+02 4.2 0.1 2 23 118 139 117 139 0.93 4 20 3.8e-05 0.0096 18.4 0.4 1 23 143 166 143 166 0.97 5 20 0.3 78 6.1 0.1 2 22 171 191 170 191 0.95 6 20 0.56 1.4e+02 5.3 1.9 1 23 198 221 198 221 0.89 7 20 0.0068 1.7 11.3 3.8 1 23 228 251 228 251 0.96 8 20 0.0033 0.84 12.3 1.5 1 23 256 278 256 278 0.96 9 20 0.067 17 8.2 0.2 2 23 333 355 332 355 0.94 10 20 0.024 6.2 9.6 0.1 2 23 379 401 378 401 0.95 11 20 0.0011 0.28 13.8 0.4 2 23 425 446 424 446 0.96 12 20 0.018 4.5 10.0 0.7 1 21 450 470 450 471 0.94 13 20 0.39 99 5.8 0.5 1 23 512 534 512 535 0.93 14 20 0.28 70 6.3 0.5 2 23 561 583 560 583 0.95 15 20 0.065 17 8.2 0.2 2 23 607 628 606 628 0.94 16 20 0.0002 0.05 16.2 0.0 1 23 632 655 632 655 0.97 17 20 0.069 18 8.2 0.6 1 23 659 682 659 682 0.97 18 20 2.1 5.3e+02 3.5 0.5 1 23 687 712 687 712 0.88 19 20 0.07 18 8.1 5.7 1 22 721 742 721 744 0.88 20 20 0.01 2.7 10.7 0.7 1 23 754 777 754 777 0.96
Sequence Information
- Coding Sequence
- ATGGCGAAAAAGAATGCGGAAGTTGTGTTAGAGTATTCCACCGCGTATCCGTTCCGACTCCAGGGGAGTAATATAATCTGCGTATACTGCTGCGAGTATTTCCAAGATCCAAACGAATTCCGGCGGCACATGGACGATTTCCACAAAACCTTCACAGTGTCCACCGCATTTGCTCACTGTCGGCCTAACTTAAAAGTAGACCTGACCGGACTTAAATGTAGACTGTGCCACGAGCCGTACGAGGATTTGAAAGCGATTGCCCAACACATTTACGAGCAACACCACTGCAAAAGGCTCGACCTCAGCCAGGAAATAAGCTTGCAACCTTACAAACTGGATAAAGGCAACTGGCAATGTTTCATTTGTAATATGCAATTGCCTACTCTCGTAAAGCTAGGACGGCATACGACAGcgcattatttaaaatttacatGCGATATATGCGGCCGCAATTACTTCACCAACGAAGCTTTAAAGTATCACTTGAGGCTGGCCCATTCCGGGAAGTTGAGCTGCAGAAGGTGCTGGCAGGAATTTCCCGATGCAGAAAGCAAAAGGGACCACATACGAACCTCGAAATCGTGTTGGTGTTTCTGTTGTCTTCACTGTGGCGACAGATTTATGTCGTGGGAGGCTAAGCAAAGGCATTTGGTGGAAGTCCACGGACGCCAACGAGTCACCTACGAATGTTCCGCGTGTGATAAAGTCTTCGCAAATAGAAAATGCTATTATAAGCATTTCAAGGTGCAGCATACTGATGATAATTTCTCATGCGGCTTTTGCAATCAAAAGTTTGCTCACAAAAGGGAACTGGACGAACATCAGATTGGACACACAGgaccgAGAAAGGATATTGACGAGGTTAATGAGAAAAGAGCTAAACCGAAAAAGAGATTATTCGAAAGATCAGTTAATCAGAATCCTCAAAGGCAAAACGCTGTACTCATACTTAAGCACTCTACCGCGTTTCCTTTCAAAACTAGATTTAATAGGATAGTCTGTTCCTACTGTCACGACGAGTTCAAACCGATGGCCGCACTCAGAAGTCATATAAAAGCAGAACATGCTAACGCGGATTATAACAGTGCATTCTACAAAGTCGTCGACGATCTAAAGATAGATATCACTGAACTGAAATGTAACATGTGTGAAACGGATGTTCCTAATGTAGATAATCTGATGACACACCTGTCGCGAGACCATAACGTAAAAGTCAATTTCGATGTGCCATTCGGTGTGTTACCATATCGACAAGCAGCTTCTGGACATTGGATGTGCTTAGACTGCGACAAAACGTTCAATGAATTCTCTCAAATCAACGGCCATTTAAGAAGTCATGTGAAAATTTTCACATGCGATAAGTGTGGAGCTACTTTCTTATCGGAACACGGGTTAAAGCAACACGAGCGCAAGTTTAAGTGCTATAAGACATCGTACAAGCCTCGCTTCGGGAAAGCTCTGAAACACCGAAGTAACACGGAAATTATTCTTCAATGTTCCACTGCGTGTCCATTCAGGACTTGGGGTCAGAATTTCAACTGCGTGTTTTGTCGCGTCCAATCGAACGACCCGAACGGTCTGCGGACTCACATGGCCGCTCACCACGCTAACTTCGATGTCCAGTCAGTTTTCAACAGGAAGCTCAGGAAAGAGTTCTTGAAAGTTGACATAACTGACCTCCAATGCAAACTTTGCTTCATGCACATAGATAGCTTAGATGACTTGATAGTACATTTGAAGAACGATCACAAGCAGCCTATAAACTGTGACGTCCAGCCAGGGGTGCTGCCTTTCAAGTTGAACGATGGATCGTGTTGGAAATGCGCTATTTGCGCGATCCAGTTCACCGATTTCCTATCGCTGAAGAAGCACACCGCGGAACATTTTCAGAATTACGTGTGCGACACTTGCGGCGAAGGGTTCATAACGGAGACTGGACTGATCGCGCACACGAAAATACCGCACGGGAACAAGTATAGCTGCAGTCGATGCGTCGCCACCTTCTTCACTTTAGAGGAGAGGAACGCCCACATCAAGTCGCAGCATACAACACTGCCGTACATGTGCGTTTATTGCAAGGAGAAGCCCCGGTTCGCTACTTGGGAGCTGAGAAAGCGACACCTTATGGAGTACCACAACTACAAGCCCGGCGCGGAGATGTACGAGTGTACAACCTGCCATATGACCTTCAAAACTCGGTCTCAAAAGTACCACCACAATGTTAAGGCCCATAGGACGAAAAAAGACTCAGAATTTACGTATCCATGCGTGAGTTGCTCAAGGAGCTTTGCATCCAAATTGTCATTGGACAAGCACGTGTCAAAAAAGCATTTTCATGTCTGA
- Protein Sequence
- MAKKNAEVVLEYSTAYPFRLQGSNIICVYCCEYFQDPNEFRRHMDDFHKTFTVSTAFAHCRPNLKVDLTGLKCRLCHEPYEDLKAIAQHIYEQHHCKRLDLSQEISLQPYKLDKGNWQCFICNMQLPTLVKLGRHTTAHYLKFTCDICGRNYFTNEALKYHLRLAHSGKLSCRRCWQEFPDAESKRDHIRTSKSCWCFCCLHCGDRFMSWEAKQRHLVEVHGRQRVTYECSACDKVFANRKCYYKHFKVQHTDDNFSCGFCNQKFAHKRELDEHQIGHTGPRKDIDEVNEKRAKPKKRLFERSVNQNPQRQNAVLILKHSTAFPFKTRFNRIVCSYCHDEFKPMAALRSHIKAEHANADYNSAFYKVVDDLKIDITELKCNMCETDVPNVDNLMTHLSRDHNVKVNFDVPFGVLPYRQAASGHWMCLDCDKTFNEFSQINGHLRSHVKIFTCDKCGATFLSEHGLKQHERKFKCYKTSYKPRFGKALKHRSNTEIILQCSTACPFRTWGQNFNCVFCRVQSNDPNGLRTHMAAHHANFDVQSVFNRKLRKEFLKVDITDLQCKLCFMHIDSLDDLIVHLKNDHKQPINCDVQPGVLPFKLNDGSCWKCAICAIQFTDFLSLKKHTAEHFQNYVCDTCGEGFITETGLIAHTKIPHGNKYSCSRCVATFFTLEERNAHIKSQHTTLPYMCVYCKEKPRFATWELRKRHLMEYHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKDSEFTYPCVSCSRSFASKLSLDKHVSKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -