Sgig044335.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012551.1:5127655-5148943[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7 6.8e+02 3.2 0.3 2 23 6 27 5 27 0.95 2 13 0.05 13 8.6 0.2 1 23 1128 1151 1128 1151 0.96 3 13 5.6e-05 0.014 17.9 1.7 2 23 1248 1269 1247 1269 0.96 4 13 0.00025 0.063 15.9 0.7 1 23 1275 1297 1275 1297 0.97 5 13 2.7e-05 0.007 18.9 4.1 1 23 1303 1325 1303 1326 0.96 6 13 0.32 83 6.1 0.8 5 23 1339 1357 1338 1357 0.96 7 13 0.015 3.8 10.3 0.7 3 23 1364 1385 1363 1385 0.96 8 13 0.092 24 7.8 0.1 2 23 1404 1424 1403 1424 0.96 9 13 0.0011 0.28 13.8 0.8 1 20 1430 1449 1430 1452 0.91 10 13 0.00097 0.25 14.0 0.9 1 23 1460 1482 1460 1482 0.98 11 13 0.014 3.5 10.4 7.3 1 23 1488 1510 1488 1510 0.98 12 13 6.7e-06 0.0017 20.8 1.3 1 23 1516 1540 1516 1540 0.98 13 13 0.00033 0.084 15.5 5.1 1 23 1546 1568 1546 1569 0.96
Sequence Information
- Coding Sequence
- ATGGATCAGCTTATTCAATGTCCTGTGTGTACATTATACTTACACAATGGAATGAGTCTTGAGACCCATTTGGATACACATCCCAAAGATCAAGTAATCAAAGCCCTATGTAGCTTGACCAATAAAGGTGGTGGTAGTAATTACACAAGTAGGACATCTACTCCAAATAATTCTGAACAATCGTATCGGAGTAGATCTCGCACACCAGTCGTGGATGAGAGGTGGACAAGTTCCCACCAAGAAAGTGACAGATATTGGAAAAGAACGCCAAGTAGTAAAATATTGAAACCTAATCTGGTGCTAAATAACCCTTACATTGGCACTCCTGATGTTAGAAGTGGAGAGTACcaatttaataacaatgtaaatGAGTCTGTTCCTTATTCTGGTACAAcatattcaataataaatgataaaaCTCAGCAAACTTATGCAAACACACCTCCCTTATCGGAGATTGATCAACAATATGTATACTCTAATGAAACACAAGAAGACAGAGAAATTAAATATTCTAGAAGTGAAAATTACTCACCAATGGAGAGCACTAGCAGTGTTTTCACACACAATTTACCATCAGTGAGTTCAGGTATTAAGTTTCATACAACTTTGATGTCTGCCATGCCAAGGAAAGGTAATGAAAATATGGTGAAAATATTACCAAAACCAAATAATATATTCCTAAAAACGAACCATACCCAATATATTACCCCAACAGTAAAGCCTATTCAAATGATAGTTCCTCATACACCTACATttgttcaaaaaaatgtacaaaataatatgtttatgACTAGCACAATATCAGGAAGCGCAATGGTACATAACAAAGGTCCTACATTTGTTTCGCACCCACTTAATCAAATTAGCAGTAGTAGAATTACTCCAGGTAcaactgttgttcaaaattctcAGATCATTTATAGAGAAACAGTACACAATATTGATGGTAAGAGATTTATTACATGTGCACCATCTATTCTTAGTCGGGAAAATGTTACTAATGTATCTCAAGCAACTTCTATGTATCAGAATGTTGTGGTTCTAGATCAAATGGGTAATTCATCATGCATGTATAAAACTCCTCAGCCAATCATAACAAAGCCAAGTCCCTCTCCACTGTATGGCAATAATTCATCTAAATTGCCACCTAGTACTCCTCCAAATACAGAAGAATTCAAAGATTTACCAACtgataataaatcaataatcaTAGAAGTGGAACCAGTTGGCAATTTTAACTATGGTGCTTCAATTACTACTCAAACTGATATTGAACTTCCAAAATCTAAAACAAGGAAAATTCTTTCCCCTGACAGAGTAGAAAAAAGTGAGACACCAGGGTCAAGTAAAGGTCTGAAGATTCTGAGTAATATTAAGGTTGAAGTTCCAGTAcaacataataaatatatggTCAACACAGTGATGGACTTAACAGGCCCTATGGACTTGGAATATATGGAGAGGCTGGAGACACCAGAAAAAAATCTTACTGACATAGATGAAAAAGACTTCAAAGAAACGGATCAGTGTACTCAACCAACAGTATCAGGCAGTGATGGTGTAATTTCTAATAATACTTTCTCTGTGATTAAAAACATTGGTAATCCACATTCATACAAAGAATCTAAACCTAACATAATTGATAGTAAGATAGATATTGAGTTTTCAGATAGTTGTCCTATACCAGATTTAATATGCAATGAAAAACCATCAATATCTCCATGTAGTGAATTATCTGATAATACAGAAAATTCAACAGATAATATATCATTGTCATCAAAGACATGTAGTAGTgatgaaaaatgctttgaaaatGTCAGTAGGAATTTACCTAAACCTGGTAGTAGCAAGCACAAAGAAATTGCAAGTTATGTTGATAAGATCATACCCAAGCTCAGTTGTAACCAGCAAAATAGCATTGAAATTGATGTTGAAAAGAATTTACTTAATCTAAGTAGTAGCCAGCAGAAAACTATTGACATTATTGCTGATAAACCAAGTAGTAGCAAGCAAAAAATCATTGAAGTAAATGTTGGTAAGAATTCCCCCAAGCCAAGTAGCAGTAAgcataaaagtaatgaaattcATGTTGATAAGAGCTCATTTAAGCTAACTTGCAGCATGCAAAAAAGCAATGAAATTAATGTCGATAATAATTCACCTAACCCAAGTAGTAGCAAGCAAAAATCTATTGAGagcaatattgataataaatccCAAGCTCAACATCAAAAACCTTACAGGCACAGCGCTTTGAGATTAAATAATATCTTTGTTAGGAAGAATAAAAAGGTTTTGCAgataaaaaatgctaaaatGTTTCCTACTCCTTGTTCTTCTAAGCAAAAAGATGAAGAACCTAGATCACCTACTTGCAAATCAACAGAGTATCATACTAGTAAAAGTTATGTTGCAGAAAACAAAGACTGTCATGAAAAACTTATGTCCTTAAAATTGATAACAGTGGAACAAATACCAACTACTGAAGAAAACTATGATTTGAAAGCTGTAGCTGAAAAGCCGTCAATAGATATTCAACATGTAGCAGTATCAATTATTAATCAGCATAGCCCATTTAGACCACATGCTGGGGAGGTCCGAGTGAAAGAAGAGACAAATACAAGTCATGAAGATGTAATAGGCAATGAAAATTGTAAAGATATTAATATGTCACCAGTTGATAGTTTACAACCAGTAAATATAATCTCATATGGCAATATGGAACCTGGAGACTTTGAAGAGGAGTCAAGTCAGAAAGAACTGTTAGAGCTAGAAGCTAcaccaaatcaaatcaaaaataaacaaattgttAGTATGATGAATGAAAATTACTTTGGGGATAACATCTATGCAGATTACTTTACTCCTGATAGAGTGGAGTCCTTTGACACAAAAAAAGATCCTGCAGGTTTTCCAAACGAAAGTCGAAAAGAGAACACACATTTATGGGGTGAATGCTCACGTAAAGATAGTGAATTTGTATTGACTAATTTTATACATGAAAGCTATAAAATAGCTGAAAATAGTGGAGCAGATTACTCAGATATAGGTAACAGAGAAGCCAATGTTAGTATTGAAGGAGACCAGGATAGTAAGGTAGATGTTCTGAGTGAGAGTCGTAGTGAAGGGGATCTGCCACTGAACATTTGCACTGATGAATGCATGCCACCACGTGGCGAACTCAGCGGTCAAGAGAGTAATGGGGATATGGACTCTTCATGGAGTGGGatgTATCGAGATGCTCGACCACCATCAGCGCCATACGATTTAATTGCAAGAGAGAGTTGGGTGTCTGATGGGTCTGAGATAGACCATAATGAAAAGAGAGAGAATCTGGAGGAGGAGTTGTACTCGAAGTCAGTGGTGCAGCTGCAGTCGCACTCGTGTCCCAGTTGCGGCGCACAGTTCGCGCTGGCCCGCGACATGCGCGCGCATCGCTTGCGTGCGCACTCGCAACCGCACGCCGATTACCGCTTGCTCCCTACCAGACAAATCAAAAAGGAGGACAAATCGGAGGACCCTATTACAGGCAGCATGCCCGTCGACTCGAAGGAATCGCTGGCGGTGACCATTCTGCAAGCGTACGGCGACGAAATTGCGGAAGCCAAGCCCAAGCTCGAGGGTCTCGTGAAGGAGGAGCCGAGGCAGCGCAAACGCCGGGACTATGTGTGTCCTACATGCAAGGTGGACCAGTTGACGGACGTCGCGTTCAACGCGCACCTCAAGGTGCACCCGCTCGAGTGCCTCACGTGCGGCAAGTGCTTCTTCCGGCGCGCCAACCTCGCGCTGCACGTCAAGACACATTTGGGCATAAAGAATTTCAAGTGCGAGGTGTGCGAGAAGCGGTTCATCACGAAGCAGAAGCTGGCGGAGCATAGCAACATTCACACGGGCCGCGCGCCGTTCAAGTGCACCGTGTGCGACGAGACCTTCCGCCGCTACTCGAACATGGCCCAGCACAGGAACCGCCACCACTTCCGCAAGAAGGCGAAGGTGCGCGACTTCGTGTGCCAGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTCGTGTGGCACCGCGAGACGCACGAGCCGCGGCCCAAGGCGTGCCTCTACTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGCGGCACGTGCGGCGCGCGCACGACGTCTGCTACGTGCCGCCCGACGCGAGGCCCGCGCCGCGCGCGCTCAACGTGCCCTGTCCCGTCTGCAAGCAGGTGTACCTACGAACGAACATGCGCGCGCATCTTTTGACGCACAGCGGAAAGCGTCCGTACCAGTGCATAGTCTGCAACAAGGCATTTACAACCAAATGGAACCTCAAGCTGCACCGCTGGACCCACATGAACCGGTCAGCGAAGCCGTTCAAGTGCACCCTGTGCAAGGGCGCCTTCATCCGCCACTCGGAGTTCGTGGCCCACATGAACGCCCACAAGTCGGTCAAGCCCTACACCTGCAACTACTGCGGCTGCCAGTTCATAAGGAAGTACAACTGCCAACGGCATGTCAAAGAACACGAGATGGCCAAGAAGTATGTGTGCAAGGTGCCGGAGTGCGGTAAGTCGTTCCATAGGAGCTATTACCTATCCGAACATATGAAGGTCCACAGCGGAGCTCGACCGTTCTCGTGCAACATCTGCGGAAAGACCTCGAGCAACAAGTCTAATCACAATAAGCACATTAAAATACATCACGCGCGCGAACCGGTCGCGACAGAAGcatag
- Protein Sequence
- MDQLIQCPVCTLYLHNGMSLETHLDTHPKDQVIKALCSLTNKGGGSNYTSRTSTPNNSEQSYRSRSRTPVVDERWTSSHQESDRYWKRTPSSKILKPNLVLNNPYIGTPDVRSGEYQFNNNVNESVPYSGTTYSIINDKTQQTYANTPPLSEIDQQYVYSNETQEDREIKYSRSENYSPMESTSSVFTHNLPSVSSGIKFHTTLMSAMPRKGNENMVKILPKPNNIFLKTNHTQYITPTVKPIQMIVPHTPTFVQKNVQNNMFMTSTISGSAMVHNKGPTFVSHPLNQISSSRITPGTTVVQNSQIIYRETVHNIDGKRFITCAPSILSRENVTNVSQATSMYQNVVVLDQMGNSSCMYKTPQPIITKPSPSPLYGNNSSKLPPSTPPNTEEFKDLPTDNKSIIIEVEPVGNFNYGASITTQTDIELPKSKTRKILSPDRVEKSETPGSSKGLKILSNIKVEVPVQHNKYMVNTVMDLTGPMDLEYMERLETPEKNLTDIDEKDFKETDQCTQPTVSGSDGVISNNTFSVIKNIGNPHSYKESKPNIIDSKIDIEFSDSCPIPDLICNEKPSISPCSELSDNTENSTDNISLSSKTCSSDEKCFENVSRNLPKPGSSKHKEIASYVDKIIPKLSCNQQNSIEIDVEKNLLNLSSSQQKTIDIIADKPSSSKQKIIEVNVGKNSPKPSSSKHKSNEIHVDKSSFKLTCSMQKSNEINVDNNSPNPSSSKQKSIESNIDNKSQAQHQKPYRHSALRLNNIFVRKNKKVLQIKNAKMFPTPCSSKQKDEEPRSPTCKSTEYHTSKSYVAENKDCHEKLMSLKLITVEQIPTTEENYDLKAVAEKPSIDIQHVAVSIINQHSPFRPHAGEVRVKEETNTSHEDVIGNENCKDINMSPVDSLQPVNIISYGNMEPGDFEEESSQKELLELEATPNQIKNKQIVSMMNENYFGDNIYADYFTPDRVESFDTKKDPAGFPNESRKENTHLWGECSRKDSEFVLTNFIHESYKIAENSGADYSDIGNREANVSIEGDQDSKVDVLSESRSEGDLPLNICTDECMPPRGELSGQESNGDMDSSWSGMYRDARPPSAPYDLIARESWVSDGSEIDHNEKRENLEEELYSKSVVQLQSHSCPSCGAQFALARDMRAHRLRAHSQPHADYRLLPTRQIKKEDKSEDPITGSMPVDSKESLAVTILQAYGDEIAEAKPKLEGLVKEEPRQRKRRDYVCPTCKVDQLTDVAFNAHLKVHPLECLTCGKCFFRRANLALHVKTHLGIKNFKCEVCEKRFITKQKLAEHSNIHTGRAPFKCTVCDETFRRYSNMAQHRNRHHFRKKAKVRDFVCQCGAVFHSRAKLVWHRETHEPRPKACLYCSDKFVHAASLTRHVRRAHDVCYVPPDARPAPRALNVPCPVCKQVYLRTNMRAHLLTHSGKRPYQCIVCNKAFTTKWNLKLHRWTHMNRSAKPFKCTLCKGAFIRHSEFVAHMNAHKSVKPYTCNYCGCQFIRKYNCQRHVKEHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHIKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -