Sgig074893.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012564.1:15037626-15056413[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 3.2e+02 4.2 1.4 1 23 180 203 180 203 0.88 2 12 0.21 55 6.6 0.4 1 23 211 233 211 233 0.94 3 12 0.4 1e+02 5.7 0.1 1 23 237 259 237 259 0.93 4 12 6.7e-05 0.017 17.6 3.7 1 23 270 293 270 293 0.96 5 12 0.0032 0.82 12.4 0.8 2 21 298 317 297 318 0.92 6 12 5.1e-05 0.013 18.0 0.2 2 23 334 355 333 355 0.94 7 12 0.00011 0.027 17.0 0.3 1 23 360 382 360 382 0.98 8 12 1.5e-05 0.0038 19.7 2.1 1 21 391 411 391 416 0.95 9 12 0.0021 0.55 12.9 2.9 1 23 424 447 424 447 0.92 10 12 0.00012 0.031 16.8 0.5 1 23 453 476 453 476 0.97 11 12 0.015 3.7 10.3 0.4 3 19 490 506 488 507 0.89 12 12 0.0068 1.7 11.3 0.6 1 23 520 543 520 543 0.98
Sequence Information
- Coding Sequence
- ATGCGCATTCACCGAAGTGTAACCTGTAGAACACTGAAAGGCAATTCTAAATGCTCAGTGACTGCAGCTGGGCCACAAGGctttagtacaCACACATTCTTAAATTCTCCATCTGATTTCACCAAACACTCAACGACTCGCCTGAGGTCTCATCTGGACCACTGTGACTACTTTCCTGCATCGATAGAAGTGGCTGACGTTGAGGTGAAGCAAGAATCTGAAAGTCGAGAAAAGACAGAAGATGACATTAAAGAGGAAGAGAATGGCTACATCCAACCTGACCTCCATTTTTCGGAGGAAATTGGCCAGGAACTGGACGTTTCTTCGGAGGATGATATACAGTTGTCAGAGcttaaatacaagaaagagTTGCGTCAAGAGGATGTCAAAAATGAGgTACAATCAAAAGAAAACAGGTCAAGTAGAAAAATGAGAAACTTGCCGGAGGAATTAGTTGAGCTGTTCACGATGACCGAAGAGGAGATGTGGAGTGTGCGCGCCCAGGACCAAGAGAGTAAGGCGTTCACCCGACAACGATACAAATGCATCAGTTGCCTGATACTATTCAACTCGCAGAAGCTTATGACTGACCACATGAAGAGGAAGCATAGAGCGAAAGGCGCCGAGTCGTTCCAGTGCGACGTCTGCCAGGCGTACTACGGCAGCAAAGAGCGCCTGTCCACACATCGAGGCCTCCACTCGAACGCGTACAAGTGCAAGGTGTGCGAAGTGACCACCTCCCTGAAGGTAGTCATCGCGGACCACCTCAAGGTCCACCAGGACCTGGAACAGAGTATCGTTAAGGAGTACAGGTGCAAGAAGTGCGATAAGGTGTTCAGCACGAAACCGAAGCTTCTGTACCACAAAAGTAAATATCACAGGGAAAAATTGCAGTGCGACTGTTGCGGGAAGGTGTTTGCCAGCAAGATGACCCTTCGGTACCATCTCAAGGTGATATCGCCGAGTAAATCCGACAAACCCAAAGAGAAGCTGAGTATACCGTGCAAagggtgcaacaaggtgttcaacacTAGGAAAAGCTACACGGCCCACGTGGTGATACACAACGGTATAACGTACCCGTGCCCCATATGCGGCAAGCTGTTCCAGTGGAAGAGGAACCTGGCGCGTCACACGAGGAACCACAGGGAGAGGGACGCCGGCGCGTACTACGAGTGCAGGGAATGTAGCAAAAGCTTCTCAAGTAGGGAGAGCTACAACAACCACATGAGGCTGAGCAAGAGGCACGTGCCGGAGGATGCGTACGTACACACGTGCAGTTATTGCAACAAGAAATTCGCCACCAAATGGTGCATGGTGGACCATATAGACTGGGAGCACTTCAAGATTATCAAATATCAGTGCAATGTCTGTTTTAAGGCGTTCAAAACTTCCAAGATACTAGTGGCGCACATGAACAACATACACGAAGGCAAGAAGAGTAAGGAGCCAGACGGGGAGCATCTGTGTGATATCTGCGGCAAATCCTACAAGACGGTGAAAAGACTGAAGGGCCACGTGTGGGCGATGCACAAGAACAGATCGCCGAACAAGAACTACAAGTGCAAGCTCTGCCCGGCGACATTCGCGTGGCAGACCTCCATATACAAGCACATGAAGATGATGCACGACAACAAGAGAAATAAGCAACCTCGCACCGTCCAGCCAGTGAAGAAGCAAGACCCATACCCGAGTATGGAGATGGACGCCGCCAGGATACACTACTTTGAGACCAATCAGCTCGCACAGGGTATTATAACGCCGCAAGTGACTCACGTCTGA
- Protein Sequence
- MRIHRSVTCRTLKGNSKCSVTAAGPQGFSTHTFLNSPSDFTKHSTTRLRSHLDHCDYFPASIEVADVEVKQESESREKTEDDIKEEENGYIQPDLHFSEEIGQELDVSSEDDIQLSELKYKKELRQEDVKNEVQSKENRSSRKMRNLPEELVELFTMTEEEMWSVRAQDQESKAFTRQRYKCISCLILFNSQKLMTDHMKRKHRAKGAESFQCDVCQAYYGSKERLSTHRGLHSNAYKCKVCEVTTSLKVVIADHLKVHQDLEQSIVKEYRCKKCDKVFSTKPKLLYHKSKYHREKLQCDCCGKVFASKMTLRYHLKVISPSKSDKPKEKLSIPCKGCNKVFNTRKSYTAHVVIHNGITYPCPICGKLFQWKRNLARHTRNHRERDAGAYYECRECSKSFSSRESYNNHMRLSKRHVPEDAYVHTCSYCNKKFATKWCMVDHIDWEHFKIIKYQCNVCFKAFKTSKILVAHMNNIHEGKKSKEPDGEHLCDICGKSYKTVKRLKGHVWAMHKNRSPNKNYKCKLCPATFAWQTSIYKHMKMMHDNKRNKQPRTVQPVKKQDPYPSMEMDAARIHYFETNQLAQGIITPQVTHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334190;
- 90% Identity
- -
- 80% Identity
- -