Sgig016391.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012542.1:51061634-51083947[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00074 0.19 14.4 2.7 1 23 92 114 92 114 0.98 2 10 0.082 21 7.9 0.2 1 23 147 170 147 170 0.92 3 10 3.2e-05 0.0082 18.6 6.8 1 21 177 197 177 200 0.95 4 10 2.2e-05 0.0055 19.2 0.3 2 23 207 229 206 229 0.96 5 10 3.4e-05 0.0088 18.6 0.7 1 23 242 264 242 264 0.96 6 10 3.4e-06 0.00086 21.7 0.1 1 22 270 291 270 295 0.94 7 10 1.1e-05 0.0028 20.1 0.9 2 23 304 326 303 326 0.96 8 10 0.00025 0.064 15.8 0.2 1 23 332 355 332 355 0.97 9 10 3e-05 0.0078 18.7 0.5 1 23 364 386 364 386 0.98 10 10 0.0016 0.42 13.3 0.0 1 23 392 415 392 415 0.96
Sequence Information
- Coding Sequence
- ATGTTAATTACTAAACGAGAAATAGCAGATGTTAAGGATGAAGATGATTATCCACTGAAGGATTTGTTAAAATCTGTTGTCAAGGTTGAAAGTTCAGACTGGAAAAAGAAGAAAACACAGAAAAGAACTAAGAAAAAGCTCAAATGCACTAAAAAGCAAGTCAGGAACAGAAGAGAAAACAACTCGAAGATAAAGTACATATCAATCTCAATGGAACAATGTATGCTGGAACGGGCTAAGATGGCGGAGGATAGTAAATATTTGGATTGCCTCTTTAAATGTACGGATTGCATCAAAGGATTCAATTTTAAATCTAGCTTTGATAAGCATATGGAGAAACACAATgagAAAAATGGTGATTATGAATGCGATATATGCAAGCAGTGGATGTCGTCTGAAGAGAAATTGCTAAGTCATAAAAGGTGTCATCAAATTCGGTACAGATGTTCCGAATGCGGCATTACCAGGGTCAGCAGGCTGACAATCCGTGACCACTACAAGGCGGCGCACTGTCCGGAATTCTCTCAATATAACTGTCCACACTGTCCCAAGGTTTTTTTCCGCCAGTCGTCGCTGAGAAAACACATATGCTGTTTGCATACGAAGAAGGAGCGCATATCGTGCTCCTACTGCGACAAGACGTATGCGTACAGTCAGGGTCTGAAGACGCATATTATGGTTCGCCACCAAAAGGACGAGGAGTCGAAGGGTCTGAACAAGCGCCACGTGTGTCCCGAGTGCGGCATGTGCTTCGCAGCGCCATCTCTATTGAAGAACCACAGCATCAAGCACTCACTCACCAGGGACTACTACTGTGTGGAGTGCGACAAGAGTTTTAAGTCTGAAGCAGCGCTGAAGAACCATTTGAAGACCGCCGCGCCTCACGTGAATTACTCGGAGTTGCCACTAACCTGTTCGCAGTGCGACAAGAGGTTTGCTATCAGGCGAGATCTTGAGAGACACATGAACAGAATGCACTTGAACATTCGACCATATCAATGCGACAAATGCGATAAGGCGTACGTGAACGGATGGTCACTGAGCGAGCACAAGAGACTGATCCACGAAGGCTACAAGAGACCGCTTAGATTTCCTTGCACGTTGTGCGACAAAGTGTTTGACCGTAAGCAAATCCTCAAAGGCCACATTCGGACCCACACCGGGGAGAAACCGTATCAATGCAGCGAGTGTCCTGCGGCCTTTAGCCAAGCCAGCATCTTGGGAACACACATCAAGTTGATACACCTCAAACTGACCAGAGACGGCAGACCTAAAGCTATGGCTATGAAGTGA
- Protein Sequence
- MLITKREIADVKDEDDYPLKDLLKSVVKVESSDWKKKKTQKRTKKKLKCTKKQVRNRRENNSKIKYISISMEQCMLERAKMAEDSKYLDCLFKCTDCIKGFNFKSSFDKHMEKHNEKNGDYECDICKQWMSSEEKLLSHKRCHQIRYRCSECGITRVSRLTIRDHYKAAHCPEFSQYNCPHCPKVFFRQSSLRKHICCLHTKKERISCSYCDKTYAYSQGLKTHIMVRHQKDEESKGLNKRHVCPECGMCFAAPSLLKNHSIKHSLTRDYYCVECDKSFKSEAALKNHLKTAAPHVNYSELPLTCSQCDKRFAIRRDLERHMNRMHLNIRPYQCDKCDKAYVNGWSLSEHKRLIHEGYKRPLRFPCTLCDKVFDRKQILKGHIRTHTGEKPYQCSECPAAFSQASILGTHIKLIHLKLTRDGRPKAMAMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -