Sgig018318.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012543.1:15813697-15819226[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0033 0.85 12.3 6.2 2 23 150 172 150 172 0.97 2 17 0.00032 0.083 15.5 2.2 1 23 181 204 181 204 0.96 3 17 0.0023 0.58 12.8 0.8 2 23 217 239 216 239 0.97 4 17 0.00022 0.057 16.0 0.3 1 23 248 271 248 271 0.96 5 17 6.3e-05 0.016 17.7 2.8 1 23 283 306 283 307 0.96 6 17 0.00017 0.043 16.4 0.5 2 23 334 356 333 356 0.97 7 17 0.0013 0.33 13.6 1.6 1 23 365 388 365 388 0.98 8 17 0.0024 0.63 12.7 0.7 1 19 392 410 392 413 0.95 9 17 0.00012 0.03 16.9 0.5 2 21 418 437 417 440 0.95 10 17 0.0068 1.8 11.3 4.3 3 23 450 471 449 471 0.96 11 17 8.4e-05 0.022 17.3 1.4 1 23 476 499 476 499 0.97 12 17 0.0033 0.84 12.3 1.7 2 23 511 533 510 533 0.94 13 17 0.0011 0.29 13.8 1.3 1 23 560 583 560 583 0.96 14 17 0.079 20 8.0 0.1 2 23 590 611 590 611 0.95 15 17 0.014 3.6 10.3 1.4 2 23 616 637 615 637 0.97 16 17 0.027 7 9.4 0.1 1 23 703 725 703 725 0.96 17 17 0.26 68 6.3 1.7 1 23 731 754 731 754 0.93
Sequence Information
- Coding Sequence
- ATGGTGTCAATTAATGGAGAGCTGGATTTGGCAATCAAGGAAGATCCCGATGGCCGCAAAGACCCGACAATGTTCTTACCTGAGGAACCAATGTCCTACGAAATTAAAGCGAAGAAGAAAAAGAGAAAGAAAAAGCAAGAAGACCCATTCAAAGATGTAGATGAAACAAAACGCGTTTCAGACACAGTGGATTCCTTGGATGTAAAACTGGACCCTGAAGTCACAATTAAAGTTGAAAATATAGAAGTGGAGCTGGATTTCAATGATTTCGCCAACAACAGTGGCCTGATGGTGGAGGGTCCGCACAGCGAAGACAGTCAAGAGCCTGCCGTCAAGATAGAGGAGCAAAACCGGGACGCGATCATTTTAACATtccaaaatataattaacagtgatCACTCAGTCTTTGGGAATACTCCAAACCCAGTACCACTGAATCACGCGAACACATGTAAAATTTGCCACCTAGTCTTCCATTCACCTAGAACATTAAAAACGCACCAAAAACGTAAGCACCAAATTTTCAGAAGATCACTTCAACACATTTGCGATTATTGCGGCATGTGCTACgaagtaaaaaatagtttaatagCCCATATAAAGAGGAAGCACATATCGGGCTCGTCCCAGGACAACAACGAAGAGAAAACCTGCGAAGTTTGTTCTCTAGTCTTCAAAGGACTCGCTAGATTGAGGATGCATATGCGCAGAAAGCATGGATCTTTCGAGGATTCCTTCAAGCACGCATGCCCAGATTGCGGCTTAACATATGACAAAGGCAGCAGTTTAATAGTCcacataaaaagaaaacacagaATCTCCCAAAAACCTAAGACCGACCAATGGTTCAATTGTCCCTTTTGCcctaaaatttttaatagaaGAGAAACTTACGCGCGGCACATACAGAGGAAGCATCATTCACCGGAAAATGGTGCGAATGAGGGCGAGGCGTCGACAAATTACCTAGAAAACCGAAATAAAGACACGGGCGAAGTGACTTGCACTGAATGTCCATTAGTCTTTTCCTCGATAAATTTCCTAAAACTCCACATGAGAAGAAAGCATAACGCATTGAAAGAAAACTTTAGATACAAGTGTAGAGTGTGCAGTTTGTCGTACGATAAAATCGAGAGCCTCAAACGGCACGTGCGTAGGAAACACGCCACCACATTCCAGTGCGAAGTGTGCAATCAGAAGTTTCCAACTAAAGAGTCCTGGCTCAAGCATTCCCACATCAAAGTTATTAAAGAATGCACCGTGTGTGGGTTAATTTTCTCGTCACAAGGAGGGCTGGCGAAACATATGCGATGCATACACAAAAAGGATAGCCCCAAAGTAGTTTTTTGCCATCTGTGCAAGGAGGGGTTCAGTGAGAACCGACAGCTGAAGCACCATTTACTTAAAGTGCATTTAAAAGCTACTTACACTTGTGTTTACTGTAAAAAGATATTCAAAGCCAAGGAAAGTTATAGGAGGCACATCTTAATCCAACATCCACCGCAAGTTCAAGGGGAAAATGAAATGCAGCAATGCACACAATGCACAGAATCATTTCCCGACGAAATGGAATTGTGTCAACATATTAACTTCAAACATAAGATATCTTCCAATCTGGATAATAAAGATGCAGAGGAGCTGTCGGACGACATAAAGAGAGAAGTAATCACAAATACCTTCCAGTGCACAAAATGCTCGGATTCATATTCCAGTTGGGACGAGCTGAAGTCCCATTTCATGTCAAACCACCAAGTGGTGACGGAGGCTCAGTGCCAGATATGCGGTGAGATAATGCGCGAGTCCGAACTGCAGAGTCACATCAAAAACGCACATCAAAATATCCAGCAGTGCGATTACTGCGAATTCAAGACGAAGAGCAAGGCCAGCATGACACAGCACGTGTTGCGGCACAAGAATGCGACAACGTTGCACTGTGACTTTCCCAGGTGCAGATACAAGAGCTACTACGAGCTAGCAATGCAGAAGCACAAACAGAAGCACAAGGAGTTGGGCCTGAAGCTACAATGCTCGAAATGTCCTTTTCAGTCAATGAACAAATACATATTGAGGTACCATGAGGAAGCTCACGTGACCGGAAAGAAGAAATATGCGTGCGACCAGTGCGACTACGCCACAATCCTGCCCGCAAACTTAGTGCAGCACAAGTACAAACATTCGACTGAGAAACGCTTCAAATGCGAAGTGTGCCCCTTCGCCACCAAATATAATACGTCTTTGAGGTTCCACGTCAAAAATAAACACTGTGATTTACCGagttttagttaa
- Protein Sequence
- MVSINGELDLAIKEDPDGRKDPTMFLPEEPMSYEIKAKKKKRKKKQEDPFKDVDETKRVSDTVDSLDVKLDPEVTIKVENIEVELDFNDFANNSGLMVEGPHSEDSQEPAVKIEEQNRDAIILTFQNIINSDHSVFGNTPNPVPLNHANTCKICHLVFHSPRTLKTHQKRKHQIFRRSLQHICDYCGMCYEVKNSLIAHIKRKHISGSSQDNNEEKTCEVCSLVFKGLARLRMHMRRKHGSFEDSFKHACPDCGLTYDKGSSLIVHIKRKHRISQKPKTDQWFNCPFCPKIFNRRETYARHIQRKHHSPENGANEGEASTNYLENRNKDTGEVTCTECPLVFSSINFLKLHMRRKHNALKENFRYKCRVCSLSYDKIESLKRHVRRKHATTFQCEVCNQKFPTKESWLKHSHIKVIKECTVCGLIFSSQGGLAKHMRCIHKKDSPKVVFCHLCKEGFSENRQLKHHLLKVHLKATYTCVYCKKIFKAKESYRRHILIQHPPQVQGENEMQQCTQCTESFPDEMELCQHINFKHKISSNLDNKDAEELSDDIKREVITNTFQCTKCSDSYSSWDELKSHFMSNHQVVTEAQCQICGEIMRESELQSHIKNAHQNIQQCDYCEFKTKSKASMTQHVLRHKNATTLHCDFPRCRYKSYYELAMQKHKQKHKELGLKLQCSKCPFQSMNKYILRYHEEAHVTGKKKYACDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKNKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334160;
- 90% Identity
- -
- 80% Identity
- -