Sgig002312.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012540.1:24251754-24254274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 4.6 10.0 0.8 5 23 368 386 367 386 0.96 2 12 0.021 5.4 9.8 0.1 3 23 394 414 392 414 0.93 3 12 0.012 3.1 10.5 0.2 2 23 422 443 421 443 0.91 4 12 1.6e-07 4e-05 25.9 1.0 2 23 449 470 449 470 0.98 5 12 0.0028 0.71 12.6 4.3 1 23 476 498 476 498 0.98 6 12 3.8e-05 0.0097 18.4 0.5 2 20 503 521 502 523 0.93 7 12 0.00016 0.041 16.4 0.1 1 23 557 580 557 580 0.96 8 12 0.00061 0.16 14.6 0.3 3 23 589 609 588 609 0.98 9 12 5.5e-05 0.014 17.9 0.6 1 23 620 642 620 642 0.98 10 12 0.00027 0.068 15.8 5.7 1 23 648 670 648 670 0.98 11 12 0.0027 0.69 12.6 0.3 3 23 678 698 676 698 0.98 12 12 0.0017 0.43 13.2 0.5 1 23 704 727 704 727 0.96
Sequence Information
- Coding Sequence
- ATGGAGACATGGACTGAATTGTGTCGATGTTGCCTCTCGGCGAATACGAAGGTTTCGTTATTGGACACTGAGGAAAacataaaatcaaaatttttggaAACTACTAGCATAGAGGTGAAACAAGATGATGGATTGCCACAGAAACTTTGTGAAACCTGTCTTTCTTTAATGAATTCTGCTTATGTGTTTAAGCAACAGTGTATGAGAATGGATCAGGACTTGAAGAAGCAACTTGATAATTTGATTGCTCAAGCAAAGGCTTCAATAATGGAGATATCCAAAGAAAATATTAAGGcaccaaaaaaatgtgacaTGTCCAGTCAAACAAGCGATCCTGTTCAAGAATTGCAATCAATCATTAAACAAGAGCATATAGACAGTGATGATGACTGTTACTATGTGCTGGTCATCGATGAACCGAAAGAGAAACAAATTGAATCGATAACCCCTGAACTTCCTCCACTTGATTTTCCCAATTTAGAGATATCTAATGTTAAGATAGAGAACTTTAGTGAAACTTTGGTTGAAAACAGTCCTACAGAACCAGAACCCAATTTTGAAAGAAAAGAAATTGAACAAAAGCTCCAGGAACAAAGTAAGCATAGTTTTGTAAACAATATTGACTCGTTTCTTGTTTCTACTGATAAGATTCCAGATAGTGTACCAGCAACAATTCTTGAAAATGAAGAGGAAAAtggtaatgataataatattgctAATGATAATACTAATTCTAATAATAGTAGTAATGATAATCAAGGAGATACAACTGATCTCATAGCTTCTCAAGTTGACAGTGCTACTGATATAGTAGGACAAGATTTTGATAACACAAAGAATCTTATAAAAATACTGACCACTGCTGGTCCAGATGGTACAATAGTGCTCAAAACTGCTGATGACATTGAGTATTTATCTGCCGCTAGTTTTGGAACAAATGGAGGTGCCCACCCACTGAATCcgcaagtaatattttgtgaagGCGATGGTGAGTCCCAGTTTCAAATACTAAAATGTGATGGATCTGAGTTAGTGATAGAATACGCTGATGGTAGTGAAATATCAACTGTCTTACAACAAGCTGATGGGTCATTCTTGTGCGAGTGTGGTGAGAAATTTACTGATATAGCTGAATATGAGAAACATCAACATAAGCACAACCCTGCTGGGGAACATTTGTGTAATTTGTGTGGCAAAGGTTTTGAATCCGCTGAAATATTGATTGGTCATATGCTTCTTCATAAAGCCACAGGACTACTTATACCTTGCCCATACTGTGACCAAGTAGTAAAGAGGAATTCCCTCACGCAACATAtcaaatataatcataataatattaagccACGCTGCACCATTTGCACTAAGACATTTGCAAATCCAAACAATCTAAAGAGACATATGATGATACACAAGGGTATCAAGGAATTTGAATGTGATATTTGCTTTAAACGTTTTCATCAAAAAATTACCATGCAGACACACAGATTAACTCATATGAACCCTACTTCTTGCAAAGAATGTGGGGAGACTTTTGAAAATAAGTCTGACTTATCAAAGCATAAAGAAAGTGGCTTAtgtacaaaatcaaaattgctaAAAGTTAAGGAAGAGTACATGAAAAATATCAAGCAAGAGATTACTGCATCTGTTGGTGGAAAGCTTTTAGGATATGCATGTTCCCTTTGTAAGAAAATGTTCTCATTGGAATCTGCCTTAGAACAACATGTGAATTCTGCACATGTTATTGATCCTGCCGATCTACTATGTTCAGATTGTGGGGATGTTTTTACCACAAAAAAGGAAATACAAGCCCATATGACATCTCATAAGACTGTGAAAACTAAGAATGTAAAAAGATTTGAATGTTCTATATGTAATAAAGGGTGTTCTAGTCAGGCTATGCTTATTATGCATGAGAGAGTTCATACAAATGAGAGACCTTTCCCATGCCACCTCTGTGCGCTTCGATTTAAAACTAAAACTCACCTGCGGACACATCAGCTAACTCATACCCGCGAAAAGAGATTCGGATGTTCAGTTTGCATGAAATTCTTTGCTCTCAAAGGCAATTTAGTTGTTCACCTCAGAACTCATACCGGGGAAAGACCCTATGTTTGCGCACTTTGTGGAGATGCTTTTATAGATTCTAAATACCTGAAGAAacataaattaaagaaacattCTATAGATAATGTTCCATGGGATAAATTCTAA
- Protein Sequence
- METWTELCRCCLSANTKVSLLDTEENIKSKFLETTSIEVKQDDGLPQKLCETCLSLMNSAYVFKQQCMRMDQDLKKQLDNLIAQAKASIMEISKENIKAPKKCDMSSQTSDPVQELQSIIKQEHIDSDDDCYYVLVIDEPKEKQIESITPELPPLDFPNLEISNVKIENFSETLVENSPTEPEPNFERKEIEQKLQEQSKHSFVNNIDSFLVSTDKIPDSVPATILENEEENGNDNNIANDNTNSNNSSNDNQGDTTDLIASQVDSATDIVGQDFDNTKNLIKILTTAGPDGTIVLKTADDIEYLSAASFGTNGGAHPLNPQVIFCEGDGESQFQILKCDGSELVIEYADGSEISTVLQQADGSFLCECGEKFTDIAEYEKHQHKHNPAGEHLCNLCGKGFESAEILIGHMLLHKATGLLIPCPYCDQVVKRNSLTQHIKYNHNNIKPRCTICTKTFANPNNLKRHMMIHKGIKEFECDICFKRFHQKITMQTHRLTHMNPTSCKECGETFENKSDLSKHKESGLCTKSKLLKVKEEYMKNIKQEITASVGGKLLGYACSLCKKMFSLESALEQHVNSAHVIDPADLLCSDCGDVFTTKKEIQAHMTSHKTVKTKNVKRFECSICNKGCSSQAMLIMHERVHTNERPFPCHLCALRFKTKTHLRTHQLTHTREKRFGCSVCMKFFALKGNLVVHLRTHTGERPYVCALCGDAFIDSKYLKKHKLKKHSIDNVPWDKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -