Sgig040527.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012550.1:3028609-3033626[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0001 0.026 17.1 1.1 2 23 298 319 297 319 0.96 2 11 0.1 26 7.7 3.6 1 23 330 352 330 352 0.98 3 11 0.00014 0.037 16.6 2.5 1 23 360 383 360 383 0.97 4 11 0.048 12 8.7 0.7 2 23 389 410 388 410 0.95 5 11 2.4e-06 0.00063 22.2 2.3 1 23 416 438 416 438 0.98 6 11 1.1e-06 0.00029 23.2 2.0 1 23 444 466 444 466 0.95 7 11 2.1e-05 0.0053 19.3 1.0 1 23 472 494 472 494 0.98 8 11 2e-08 5.1e-06 28.7 0.7 1 23 500 522 500 522 0.98 9 11 1.4e-05 0.0035 19.8 0.3 1 23 528 550 528 550 0.98 10 11 0.0012 0.29 13.8 2.8 1 21 556 576 556 578 0.95 11 11 9.1e-06 0.0023 20.4 0.7 1 23 584 606 584 606 0.97
Sequence Information
- Coding Sequence
- ATGGATGACAACATAAAATTAGCACCGGAAAACTTTTGTCGCGCTTGCTTGACTGAAGGCAAATCTATGGTATCCTTAAGTCAGATTTATAACGATCGCCACCGTACACTGGGCGACATACTTTCGTTTGTTCTTAACACAAAAATTCAATTCGACGGAGGGCTGCCGAAGCGAATATGCAACGATTGTGAATGGATAATGATGAAAGCGCAAGAATTTAAACAACGCTGCCTTGACTCCGAGGAAGTCTTAAAAaccatatttaaaattactacTCCCAAAAAACCAGTTGCTAGCTCTGTACTAGAGATTCCTGCAGAGTCGAACTCTGAAACTATTATCAAAACTGTAAAAAATGATTTGTACACTACAAATAGCATGAAGCCATTAGAACTATTCAAAATGGGCAATGGCAGTCCCTGTCTACCAGATGATCTAATTGTGAAAGATCAGCTAAGCAATAGTGCCAGAAATGAAATTTCTGATTTCTCTGACGATAACGAGATGAACATTTCAAACGTCGAAGACACGCAACCAAAGGACTCGCCAGACTTGAGCAATGACgataattataaaatgtattttgaACCACACATCACAATTGAAATGAAATCTAAAAGTGACCATATAAAGTGTGaagatgatttaaaaaaatgtgaaagtGACTCAAAGAAATCTAAAAGTGAATCAAAGAAATGTAGAAGTGAAACAAAGAAATGGAAAAGTGAATCAAAGACGTGTAAAAGTGGCCAAGAGAAAGGCAAAAGtgacttaaaaaaaggtttatgtgaatcaaataaagataaaagtgACTTAAAGAAATATACCGACACTAAACCAGACATTAGGCAACCTTCAAGTAAAAAATTACAACCATATTTTATACCAATCATGTGTGAATGGTGCAATCGCATATTTAAAACACCAAAATCTTTCAAGAAACACAAAGAGATGCATCTGCTCAGGTTAAACAGAAACACCATATTCTTTCAGTGCGATATGTGTATGCGCAAGTTTCTGAAGAAATCCTCGTTAGCTTCTCACATCAAACATCACGAGTTGAGGGACAGTATGAAATTTGTTTGTGGTACTTGTAAAAGGGAGTTTAAGCATCAGGGACATTTGGACAATCACATTCTGTCTGTGCACAATAAGAACTCATTGTCCTGTGACATGTGTCTATCAATGTTTACGACGCAAGAGTCTCTGGATGAACATAAGAAACAGCATGCGGAGATGAAAAAGCACACTTGTGACATATGTTTTAAGTCATTCACTGTGCTATCCACCTTGAAAGATCACATGCGAATCCATACAGGCGAGAAACCGTTTCTATGTGCAGTGTGCGGTCATAGCTTTAGCCAGAAGACCAATCTTGTGCAACATATGAGGAGGCATCAGGGTCATAAGCCTTTTAAGTGCAGGGATTGTAAACAAATGTTCGTATCGAAGGGCGAGCTAGAGTCCCACGGGCGGCGGCACAGCGGCGCGCACCCGTTCGTTTGCGAAGAATGCGGGCGCAGCTTCACCACCTCCAGCTCGCTGGTGAAGCACCGCCGTATACACACCGGGGAACGGCCCTACGCCTGCGAGATATGTCCCATGAAGTTCTCTGCTTCCGGAACACTTAAAAACCACAGGCGCACCCACACGGGGGAGAAGCCGTTCAACTGCTCCTTCTGCACGAAGGCCTTCGTGCAGCGCCAGGATCTAATCTCGCACATTCGCTGTCACACGGGCGAGCGGCCCTACATCTGCACCGAGTGCGGCCAGACGTTCAGGAAGGCAACAGCTTTGAAGGCGCACACCAAGTTTCACAAGGAGGACGCTCGGGTACCGCCCCCGGACCCTGAGTACGGGAGCAGCCAGGAGTCCTACGGGAACAGCTAA
- Protein Sequence
- MDDNIKLAPENFCRACLTEGKSMVSLSQIYNDRHRTLGDILSFVLNTKIQFDGGLPKRICNDCEWIMMKAQEFKQRCLDSEEVLKTIFKITTPKKPVASSVLEIPAESNSETIIKTVKNDLYTTNSMKPLELFKMGNGSPCLPDDLIVKDQLSNSARNEISDFSDDNEMNISNVEDTQPKDSPDLSNDDNYKMYFEPHITIEMKSKSDHIKCEDDLKKCESDSKKSKSESKKCRSETKKWKSESKTCKSGQEKGKSDLKKGLCESNKDKSDLKKYTDTKPDIRQPSSKKLQPYFIPIMCEWCNRIFKTPKSFKKHKEMHLLRLNRNTIFFQCDMCMRKFLKKSSLASHIKHHELRDSMKFVCGTCKREFKHQGHLDNHILSVHNKNSLSCDMCLSMFTTQESLDEHKKQHAEMKKHTCDICFKSFTVLSTLKDHMRIHTGEKPFLCAVCGHSFSQKTNLVQHMRRHQGHKPFKCRDCKQMFVSKGELESHGRRHSGAHPFVCEECGRSFTTSSSLVKHRRIHTGERPYACEICPMKFSASGTLKNHRRTHTGEKPFNCSFCTKAFVQRQDLISHIRCHTGERPYICTECGQTFRKATALKAHTKFHKEDARVPPPDPEYGSSQESYGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -