Sgig043743.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- rst2
- Assembly
- GCA_963935595.1
- Location
- OZ012550.1:39035936-39053882[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.001 0.26 13.9 0.1 3 23 130 150 128 150 0.96 2 15 0.0025 0.63 12.7 2.9 1 23 256 278 256 278 0.98 3 15 0.00017 0.044 16.4 0.9 1 23 284 307 284 307 0.96 4 15 0.11 29 7.5 5.1 1 23 312 335 312 335 0.93 5 15 8.6e-08 2.2e-05 26.7 1.8 2 23 491 512 491 512 0.98 6 15 0.0001 0.026 17.0 2.8 1 23 518 540 518 540 0.98 7 15 1.3 3.4e+02 4.1 6.8 1 21 603 623 603 625 0.92 8 15 0.041 10 8.9 0.6 1 23 632 654 632 654 0.93 9 15 0.0075 1.9 11.2 2.6 1 23 660 682 660 682 0.94 10 15 5.4e-05 0.014 17.9 0.3 1 23 688 710 688 710 0.96 11 15 0.008 2 11.1 4.1 1 23 719 741 719 741 0.98 12 15 0.00046 0.12 15.0 0.3 2 23 788 809 788 809 0.97 13 15 0.0018 0.45 13.2 5.4 1 23 826 848 826 848 0.97 14 15 2.3e-06 0.00058 22.3 0.9 1 23 854 876 854 876 0.98 15 15 5.9e-06 0.0015 21.0 5.9 1 23 882 905 882 905 0.98
Sequence Information
- Coding Sequence
- ATGAGCCAAACAACCATTGAAACAGACCCATTGAGCTATGAGTACCCACAGTATGGCGGCTACAACCCCACACCTGCCACATCTGCCTATACTTACGAAGTGAAATTAGAACAAAACGAATTGCTGGACCAATTCCTGAACAACGTACAGGGGTCAGGTGACAAAGCTCTAACATACCTCAACAATACCTCAACCAGAATTAACAGTAACATGGACTCCAACACTAAGTGTAATTATGCAAATAGTTGTAACGATGACAAAATTAACGATAACAAAACTAACGTAGACCTGAAGCCTGTACTtaattttaaagtgaaaaaGGAGAGAAAGAAAAAGAGCAACTATTGGTCTGAGAAGATAAAGGACCACAACTTTGAGTTTTACGGTTGCTCTGTGTGTAACATCAGCTTTTCCACACTAGCAAACTTAGACCAACACGTCACGATACACAAAGATAGGATCACAAGTTACGGtttgaaaataaagaatttgttgAAACGTCGGAAAATGAAAGAGGAGAAGAAGAAAATGAAGAAGTTAAAGAAATCTAAAACCGTTGAACCAGCTCCTCCTGAGGTAGAAATTAAACCTGAAGATGGATACATTGGCAATGAAAGAGCATCGGACTACAACAATGGGGGGAGCAATAACGAAAACAAGCCCACAAACACAGAAAATGATATCAAGCCTGTGAATAACGGAAGCCTTAGTGATAATGGAAGCAAGAGTAACGATGATAAGGAAAGAttaaatttagagaaaatttTCAAATGCTTTGCTTGCCAGAAACAATTTACTTTAAGTTACTACCTTAAATTACATGTTCGATCTCATACGGACGAGAAGCCATACACGTGCGCGGTGTGCGGCCACTCGTTCATAACGGCAAGTAAACTCGGCCGGCACAACAAGAAGATACACCTGGCCGTCAGGCACCAGTGCAGGATATGCTTCCGGTTCTTCGCGAAATTTGAGAATTTGACAACGCACTTCGATAAGAAACATCCGGACGACAAGTTAGAAGGGGAGCCTTATGATTACAACGAAATCTTACCGTACCTGAAAGAGTTAGAGGAGGAGCTGCGGGAGAAAGCGGAGAGGGAGAAAGCTGAAAGGGAGAAGAAGAATTGGTACACATGGGGTGACGTGGACAAACTCAAGGAGGAGAACAATGGACAAGTAGACACTGAGGTCATCCTTCCCAAAACGGAGGCTGTGGCAGAAGGGACCGACAAGGACCATAAAATAGTCATAGAGATTGAGGAAGTGAAGGTGGACCCTCCCGATGTGGAGATTAAGCAAGAGCCGGACGAAGAACCCAAGGATCAAGTCAAGTCCGATGATGAAGTCAGCATGAAGGATGAGAGGCACTCTGACGACGACTACTTCCCGTCGAACACGTGGGCCGCCTCCCCCAAGAGCCCGGAGGCTCCCCCCCCTGACCCCGCCGCCGCCTCGTCAAAGCCGCCCCGATGCACTGTATGCAACAAAAAGTTCAGCACGCCCTCCTACCTCCGGATACACATGAGGACGCACACGGGCGAGAAGCCGTTCAAGTGCTACATCTGCGACCGGGGCTTCATAACGTCGAGCAAGATGCACCGGCACGTGCTCACCCACCAGGAGAACTGGGAAGGTAACGAATCCAAATCCGAGGCGAAAGACAAAATGGCGAAAGATGAACAAGATGGACAAGATGGCGGCGATGATGTCACTGAAAAGGCTAAGCGTCGAAAGCGCAAAGGGAAAGTGAAGATAGGCAAGAAGAAAGGCTCGAAATTGTCGTCCAAATGCAAGACCCGGCCGCACTCGTGCGAGTTCTGCGGGAAGAAATTCCTCCACTTGGACACTTTACAGGTGCACAAGAAGTGCCACAGCGGCGAGGAGCTGGTCCACAAGTGCAACTACTGCCTGGAGGTGTGCGTTGACGAGGAGGCGCTGAAGGAGCACGAGGCAGGCCATCAGGGACCCAAGCCGTTCCTCTGCACCCGCTGCGGGAAGACCTACAAGAAGCGGGAGTCTATGGTGTACCACAGGAAGCTGCACGACCTGGAGAAGCAGTACACGTGCAACGTGTGCCCGAAGAGCTTCAACGCGGCGTTCAAGCTGCAGCGGCACCTGGCCGGCCACCGCGGCCCGCGCTACGTGGTGCGCTACGAGTGCCCGGTCTGCGCGCACATGTTCCACACCAAGTACCACGTGCAGATGCACCTCGCCACGCACCAGAGGGAGGGGCTAATCGTCGAGGAGAACCGAAACGAGATACTCGCGATGGTGTTGCAGAACGCGCACAGAATACCCAAGCATCAGGAGGGCGCCGCTAGCCTCTCGGAAACGGTCGCCTCCGACGAGAGGTCGCGCGTCTGCAACATATGCGGCGAGATCTTCCAGCACTTCTACTATCTGGAGGAGCACATCAAGGAGCACGGCTCGAAGATCGCCGTCGAGGACGTGGACAAAGACGAGATAAAGAAGCACGTGTGCCAGGTGTGCAACAAGGGCTTCAAGCTGCACTACTACCTGAAGCTGCACATGTTCACGCATTCGAAGGAGAAGCCGTTCATGTGCCAGCAGTGCGGCAAGGGGTTCATAACGCGCGGCAAGCTGAAGAGGCACCTCGAAACGCACTCGGGCCTCAAAAAGTACCAGTGCCACATATGCCACAAGTACTTCACGCGCACCAGCTACCTGCGCATACACGTGCGCACGATACACGGCAACCAGGACTACAACTTCACCAGGGAGAAGCAGGGCAGGTGGGACGGGGGAGGGGGTGGGGGGGTCGATCCGGGGCAGCGCGTGTTTAATTGA
- Protein Sequence
- MSQTTIETDPLSYEYPQYGGYNPTPATSAYTYEVKLEQNELLDQFLNNVQGSGDKALTYLNNTSTRINSNMDSNTKCNYANSCNDDKINDNKTNVDLKPVLNFKVKKERKKKSNYWSEKIKDHNFEFYGCSVCNISFSTLANLDQHVTIHKDRITSYGLKIKNLLKRRKMKEEKKKMKKLKKSKTVEPAPPEVEIKPEDGYIGNERASDYNNGGSNNENKPTNTENDIKPVNNGSLSDNGSKSNDDKERLNLEKIFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAVCGHSFITASKLGRHNKKIHLAVRHQCRICFRFFAKFENLTTHFDKKHPDDKLEGEPYDYNEILPYLKELEEELREKAEREKAEREKKNWYTWGDVDKLKEENNGQVDTEVILPKTEAVAEGTDKDHKIVIEIEEVKVDPPDVEIKQEPDEEPKDQVKSDDEVSMKDERHSDDDYFPSNTWAASPKSPEAPPPDPAAASSKPPRCTVCNKKFSTPSYLRIHMRTHTGEKPFKCYICDRGFITSSKMHRHVLTHQENWEGNESKSEAKDKMAKDEQDGQDGGDDVTEKAKRRKRKGKVKIGKKKGSKLSSKCKTRPHSCEFCGKKFLHLDTLQVHKKCHSGEELVHKCNYCLEVCVDEEALKEHEAGHQGPKPFLCTRCGKTYKKRESMVYHRKLHDLEKQYTCNVCPKSFNAAFKLQRHLAGHRGPRYVVRYECPVCAHMFHTKYHVQMHLATHQREGLIVEENRNEILAMVLQNAHRIPKHQEGAASLSETVASDERSRVCNICGEIFQHFYYLEEHIKEHGSKIAVEDVDKDEIKKHVCQVCNKGFKLHYYLKLHMFTHSKEKPFMCQQCGKGFITRGKLKRHLETHSGLKKYQCHICHKYFTRTSYLRIHVRTIHGNQDYNFTREKQGRWDGGGGGGVDPGQRVFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -