Sgig043157.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012550.1:33341397-33344397[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.15 39 7.1 0.2 1 23 40 62 40 62 0.94 2 20 0.012 3 10.6 0.0 2 23 93 115 92 115 0.94 3 20 0.022 5.6 9.7 1.3 2 23 138 160 138 160 0.96 4 20 0.0022 0.57 12.9 1.5 1 23 165 188 165 188 0.95 5 20 0.68 1.7e+02 5.0 0.3 1 23 193 216 193 216 0.92 6 20 0.0033 0.84 12.3 1.0 2 23 222 244 221 244 0.92 7 20 0.00015 0.039 16.5 0.1 2 23 252 274 251 274 0.97 8 20 0.0079 2 11.1 0.1 2 23 281 302 280 302 0.95 9 20 7.5e-08 1.9e-05 26.9 0.8 1 23 308 330 308 330 0.98 10 20 0.00011 0.028 17.0 4.7 1 23 336 358 336 358 0.96 11 20 1.7 4.2e+02 3.8 1.5 1 23 400 423 400 423 0.93 12 20 2.8 7.2e+02 3.1 0.0 2 23 453 476 452 476 0.88 13 20 1.1 2.7e+02 4.4 0.3 3 23 500 521 499 521 0.95 14 20 8e-05 0.02 17.4 0.2 1 23 526 549 526 549 0.97 15 20 0.0017 0.43 13.3 1.5 1 23 552 575 552 575 0.92 16 20 0.00027 0.069 15.7 1.6 3 23 583 604 582 604 0.94 17 20 0.00032 0.083 15.5 0.9 2 23 612 634 611 634 0.96 18 20 0.0051 1.3 11.7 1.2 1 23 639 661 639 661 0.99 19 20 8.1e-07 0.00021 23.7 0.7 1 23 667 689 667 689 0.99 20 20 2.2 5.6e+02 3.4 0.1 2 23 696 718 695 718 0.91
Sequence Information
- Coding Sequence
- ATGGAGGACAAAGATAAGAAATTGGCAATTGCACATAAGCTACTCGTAAAACGGAGAAACATTGAATATATACTGCAATACAGCAGTGTCACACCCTTCCTGTGGTACAAGGGAAAGTATAGATGCTTTTATTGCACAGAACCCATGAAAGACCCCATAGCACTGCGCAGCCACACGGTTTTGCACGAGGGCGAAAATATTGAACTGATCGTGCATGATAGGacgaaaaataatagaaataaagatGCGGCAGTGAAAGTTGATGTCACTGATATGATGTGCAAGCTTTGTCCGAAAGCAATTGCCAATCTAGAGGAGCTGATTCACCATCTGATAATTGCTCACGACGCTGAGTACGACGTGAGTGTTCCCAACTGCTTTCTTCCATTCAAACTTGACAAGGATCAACCTACTTGCTCTACTTGCAATATGAAGTTTGTGTTTTTCGAATATCTCCTGCGGCATGCGAATAAGTATCATCTTTCTCACGACTACATTTGCGATGTGTGTGGCACAAGTTTCCAGGGTGAGAACCATTTAAAGATGCACAATAGGTACTATCATAGGCAGGGTGGATACACCTGCGAGTACTGCGCAGTCAGTCTATCGACGCTCTCCAAAAAGATTTTGCACGAGAAGAACGTGCATTTGGTCAATTTGTCGACTTGCCCTCACTGTCCAGAAACATTCAAAAGTCCTTATTTTAAGAAGCTGCATTTGGCCAATGTGCATGGTGTAGAggagttaaaaattaaatgccCTTACTGTCCAAAAGTGTATCCCCAAGAAAGTATTATGTCGAGGCATATGAGGCGTGTTCATCTAAGACAGAAGAATGTGGAATGCGATGTTTGCGGTGATAAGTTTTTCGGTCCGTACGACTTGAAACTTCATATGGTAAAGCACAACGGTGAAAAGAAATTTGTCTGTGCAGTATGCGGGAAGAAATTCTCTAAGAAAAGTAACCTCAATGCTCACACTAACACCCATTCGGACGACAAACGCTACCTTTGTCTTCTTTGTAATAAATCCTTTGCTCAACAGTCCTGTTATAAGTACCATATGCGTAGACATTCACAGAAGGAAGAACCAAAAACAGGCGAGAATCGTATACAGCGTCTGAACGCACTAAGAAGGAATATTTTACTCCTCATCCACTACAGCAATGTGAAGCCGTTTAGATGGCACACCAAAGGATTCAGCTGCTTCTATTGTTCCATGCCGATCAAAGACTGCACTGCTCTCGATGCCCATTACAgtttaaaacacaaaaaagaaatagacGACTTAGACGTATTCATACAAAACAATGTTATGTCGAAAGATATCCCACTTAAAATAGATGTTAGGAATGTATCCTGCAAATATTGTCCCGACATTGAACTTGTAAGTAGTGAAGACCTCATTAATCATATAGTTTCAGTACACAAGGAAGACTACGATAAAACAGCGGGGATAAGCTTCTTACCATTCCGTCTAAACAACGATATAATGGATTGTGTCTTATGCGAGGAGCAGTTCGATAATTTTACAATGATTATGAACCACATGTACAGGCAACATGTCGCTCACTCTTACATTTGTCAAACTTGTGGCTTGAgctttataaatattatcaaactGAATAGGCATATCAAAAGTGTCCATGTTGGATACAGATGTACCGTGTGCAAGAAATTGTTCAACACTTACAATAAGTTAACCGCTCACAAGTCTGGTATTCATGGAAAAGTTGTGACGCGGTGTTGCGAATTGTGTAGCGCCTCTTTCACGACTAACTATCAATTGAAAGTCCACATGGGGAAGGAGCACAATGTGgagaaatataaaatacagTGCGAATACTGTCCCAAAACGTGTACAACGAAAGGTGCAATGTTGACACACGTGCAGTCCTTACATTCAGACGAGAGGTACAAATGTGATCTCTGCGATTATAAAGCAACCACTCAGTGGTTGGTGAAGCTACACAAACGCAAGCATTTTGGACATAAGGATTATACGTGCAGTGTTTGCGAGAAGAAGTTTGGTAGGTCGAGCAATGTTAAAGCTCATATGAAGGTACACACTGGGCAGATAGGTAAGGTCTGCAGATGGTGTAGATTCGGTTTTATCAATGGCGAAACACTCGAGGAGCATTCTAAAGAAGCACATTTACAACGCGACTGA
- Protein Sequence
- MEDKDKKLAIAHKLLVKRRNIEYILQYSSVTPFLWYKGKYRCFYCTEPMKDPIALRSHTVLHEGENIELIVHDRTKNNRNKDAAVKVDVTDMMCKLCPKAIANLEELIHHLIIAHDAEYDVSVPNCFLPFKLDKDQPTCSTCNMKFVFFEYLLRHANKYHLSHDYICDVCGTSFQGENHLKMHNRYYHRQGGYTCEYCAVSLSTLSKKILHEKNVHLVNLSTCPHCPETFKSPYFKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLRQKNVECDVCGDKFFGPYDLKLHMVKHNGEKKFVCAVCGKKFSKKSNLNAHTNTHSDDKRYLCLLCNKSFAQQSCYKYHMRRHSQKEEPKTGENRIQRLNALRRNILLLIHYSNVKPFRWHTKGFSCFYCSMPIKDCTALDAHYSLKHKKEIDDLDVFIQNNVMSKDIPLKIDVRNVSCKYCPDIELVSSEDLINHIVSVHKEDYDKTAGISFLPFRLNNDIMDCVLCEEQFDNFTMIMNHMYRQHVAHSYICQTCGLSFINIIKLNRHIKSVHVGYRCTVCKKLFNTYNKLTAHKSGIHGKVVTRCCELCSASFTTNYQLKVHMGKEHNVEKYKIQCEYCPKTCTTKGAMLTHVQSLHSDERYKCDLCDYKATTQWLVKLHKRKHFGHKDYTCSVCEKKFGRSSNVKAHMKVHTGQIGKVCRWCRFGFINGETLEEHSKEAHLQRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -