Sgig032136.2
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012547.1:11374837-11384841[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0048 1.2 11.8 1.0 3 23 621 642 620 642 0.96 2 23 0.34 87 6.0 0.3 1 22 1059 1080 1059 1080 0.95 3 23 6.6 1.7e+03 1.9 0.3 1 22 1121 1142 1121 1144 0.82 4 23 0.0017 0.44 13.2 1.5 2 21 1154 1173 1153 1174 0.94 5 23 0.077 20 8.0 0.2 3 23 1183 1204 1181 1204 0.90 6 23 0.0034 0.88 12.3 0.1 3 23 1225 1246 1223 1246 0.96 7 23 0.0042 1.1 12.0 5.8 1 23 1252 1275 1252 1275 0.95 8 23 0.12 32 7.4 0.0 1 23 1301 1324 1301 1324 0.90 9 23 0.019 4.8 10.0 3.4 1 23 1329 1351 1329 1351 0.97 10 23 0.016 4.2 10.1 0.2 1 23 1357 1380 1357 1380 0.95 11 23 0.001 0.26 13.9 1.3 1 23 1393 1415 1393 1415 0.98 12 23 0.00018 0.045 16.3 1.8 1 23 1467 1490 1467 1490 0.97 13 23 0.0067 1.7 11.3 1.8 1 23 1545 1568 1545 1568 0.96 14 23 0.00086 0.22 14.2 1.7 2 23 1593 1615 1592 1615 0.95 15 23 0.033 8.5 9.2 0.1 2 23 1621 1643 1620 1643 0.95 16 23 0.16 40 7.0 0.1 1 21 1687 1707 1687 1708 0.94 17 23 0.0012 0.31 13.7 0.6 1 23 1720 1742 1720 1742 0.93 18 23 0.00011 0.027 17.0 0.4 2 23 1830 1852 1829 1852 0.93 19 23 3.3e-07 8.4e-05 24.9 1.4 3 23 1859 1879 1858 1879 0.98 20 23 0.22 56 6.6 0.2 3 23 1900 1920 1899 1921 0.94 21 23 0.14 36 7.2 0.0 1 23 1944 1966 1944 1966 0.98 22 23 0.027 7 9.4 0.6 1 23 1972 1995 1972 1995 0.95 23 23 0.00025 0.064 15.8 0.4 1 23 2003 2026 2003 2026 0.96
Sequence Information
- Coding Sequence
- atGAATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGAGTCGGATCCTCACGTTCTGGCTTCGAAAATAAAGGATTGTGTCTCTGTTCAGATCAACGAGAATGACGACCTGCCCACAAATGTCTGCAAGAAATGTGTGGATAATGTCAACAACTGGCATATATTCAAATCAGTATGCGAAAAGACACAAAACAAATTAGAGTTTCTGATTAAAAAAGATGGAGACCAACTAGAAGAGATTAACATAAAGAATGAACCTTTATCTGATGAAGCATATGATGATGGTGTGATGATTGATGGCTCATACCCAGATAATGATAATGCTGCTTCAAGCAAAGTACAACCAGAAGGCCCGCCAATATTGGCATCCCTGGGACTTACACCGAGGAGTGATAAGAAATATATAGACCCTCGAATGGACTGGCAACGAGTGCATGCAATACTGGATATGGTTCAAGATGATGATGTCATAGATTCACTGCAGTCCATAGAGGAATGTGATGTTGTCCAGCAATCTAATCACAACTCGGAATCTGAGGGTGAACTTCTAAGTGAAATAGATGATAGCTTTATTGATTGCAAAGATGGATACCGTACAAGAAATAATACTGTTAAACTTTTATCACGGGCACCAAAAGTGTCAACCACTTCCAATAAGGCAAAGATTAAGACTGCATCAAacttaagaaaaagaaaacttgaagaaataaaaaactgtTTACAACCCAAACACGCTTGGCAGCTTCTGTTCACGGATGATATATTAGAATTAATTGTGAActctacaaataataatatactgaaAATGGGACATAATATAGAATCTTCTACTAGCATAGGAgaaattaaaacactaattggTATTCTTTACCTGCATGGTGTGATGAGACCCACTCACCAAAAAGCTAATGACCTTTGGGAAGCAAATTTTGGTGTACCATGTGTTAGAAGTGCTATGAAGTATGAGCGATTCAAGTTTATTTTACAGAATATATGCTTTGACAATGATGAGGATAATATCATAAGGTTTGACATCATGAAACGAATGAGGAAAGTGTTTGAGATATTTGCTATGAACTGTCGAACTTCCTATACTATTAGTAACACTGCAGTAATTGATGAGGTTATGGTTCCTGTTTACGGGCCGTGCCCCTTCAGATATGAAATAAAGAAGAAGTCTTTGAAAAAGGGGCTAAAACTAGTCCTTTTAGTTGACCCGAACACTTTCTATGTTAGCAATTTGGATGTTATTACTGATCCATTTTTTGCAGCAGATGAGatagtgaaaaaaattgtgcagCATTTGAATGGAACAGGGAAGACTATTATAATGGATAGCTGGTATACAACATTAGATTTGATCAAATCACTTGCTAAAGatagcaaattgtattctatAGCTGCCATTAATCCTAGTGATGATATCATACCACCTCTTTTTATGTCACGCTACAGAAAAATACGCACATTTTTGACTGGTTTTTTAGACAATGATATTTTGGTAACGTCATATTTAAATGAAGAGTCAAAGTCTGTCAATGTTATGACAAATGAACCAACTTTTTACAAGAGGGGACATGCAAATCACACAACAGCTGTTGCAGCTTACAAGAAAAACCAATCGGCAGTGGAAGGCGTCGAAAGTGACAAAGACGAAGATGAGGAAGAGGAGGAAGATGAAGACTTGACTGAAGTGGCACAACCAGTGCCAAAAGTACCGAACATGCCGGAAGTTTCTATTACGGTCATGAGATCTAGCGGCGAAACATTGCATGCTCGACAAGGGATTCAACAGCTTGCTTCAAAGGATTGTCTCGTCTGCGGCCGCTCTTATAGGTATTCTCATAATGCTAGACGACATGAGCTCACTGCTCATGGTTTCGATAgatacacaaataaaattacTAAGAAAAAGTCACATACGCACATGCAACCAAAACTAAGACCAAATCCATTTAATCCAAAATCACGGTTATTGCCGAATCCTATCAACCACAAAATGCAATTTATGGGAAAACCTATCCCCAACAAAATAGCTTCACATAAAATTATTACACCTCCAAAACCAATATTAATTAAGTCTTTTAGAGAACAGCGAAGTAATAATTTACCGTATCCTTTACGTATCAAAGCTTTGAAAGActtacaaataaagaaaaaagagccccaaattttgaaaacacttttAACGTCGAAGCCGGAAGTTTTAGTCTCTGAaccagaaattattaattcatGCCCAGAAAGCCCAGAAACATTAATTTCAGAACCAGAACTTGCAACATTTCAAGTGGAAACGATTCTTTCGGAGCCAGACGCCTTTGATAATACAGATGGTTATGACCCACAACAAGACTATGATGCACAGCAGGACTCGTTTGATCAAGGACAAAACTCTTATGAGCATGAAGACTCTTACGATCAGCAGCACGATGAGTATGATCAGCAAGGCTGTGATGATGCTGAAGATGGGGACATTACTaacaatcaaaatcaaaactaTGATACAGTTGATATGGAATCTGATAATGAGATTGAAATTGCACGTAATAAACAGAGTGCAAAAGTAGAAAATGACGAGGAAGAAAATGCTCATAAAAATGATGAAGAACACCACAAAGATGGTGATCAAAATGAGACAGAGGAAACCAATACCGTAAAAGATGCAATGAATCCTACTAGTGATGAGAATGAAGAAATACTTGATAAAAATGCTGTTCCAGAGAACATTGACAACGAAGAAAAAGACCATGAGGAGCAAGACAATAATCATGAGGAAACCATGGAAGATGATGATGACCTCCCTCTCATGGACTTGGCACCAGTTGTAGAAATCAATGAAGAAATGCGAGGTAATTCATGTAACAGTGAGCAAAATGATGAAGAGGAGGAAGAGCTTGCAGATACCTCTGAAGTTAATGATACAACTGAAGGTACTGAAGGTGTTCAGGAAATAGATCCTAACAAACTGTATGTTACAAAAACACAACgtgaattcataaaaaaatatcgcAATATAATAGAGCAGATCAATACAAAACGATGTCTCTGCTGCGATAGAGAACATCCCCGTAGAAAGGCAGTCATTCAACATTTACAAAAGAATGGCCATAAAGTGCCCAAGCATACTTGCTATAATTGTGTTGTAACATTTGGTCATATTGGTGCTTTGTTAAGTCATATGCGATCGAATACATGTACTGATTTgtggaaaataatttacaatgATAATGGAATTACTGACGACTTAGTGTTGCAGAACCCTGTTATCAACAAAGCGCAATATAAAGACATTTTCAATGCTAGATCCTATGCATGCAAGTTATGTCCTGCTAAATTTCAACTAAAACAATTTATAATGAAACACGTATTGGATGTACATGAAGATGGACAATCTAGAGTACCACTCCACTGCGTGCATTGTGGAGTACGGTTTAAAGATAAGAGCCTTATAAAAAAACACATTCGTAATGGTGAATGTACAGTGTACATTGCTTGCGATCTGTGCCCCGAAAAATTCAGACATTTACAGGAattcaatgaccacgcattggCCGTTCATGCCGATAGCTACGACCAATCAGATAACCAAAATAAATGTGTTGATGAGAGGCCAACTGACTGTCCCATATGCGGTAAAAAGAACAGTAGCTATCCGAATTTGATTAAACATTTGAAGATCATACATAATGAAGAGAAACCGCATCATTGCCAACATTGTGATCTCAAATTCGAACAATCTACCGACCTCAACAAGCACATCTATATGGAACATTCTGATAGAAGTTTGGGTGTGCAAAGTAATGAACCAGACATGTCTTTAGTGAAGGAAGAAGCTGAAGAGTATCATTATTCTTGCACAGAATGTAACGCCATATTTGAAACAGTTGATGCGTGGACTGATCATCAAGTGGCCGAACATAATCAAGTGGCTCACCATTGTGATCAGTGTGAGAAGAAATTCCTAAGACCATCAGAGTTAGCCGAGCATAAGAACACCCACTTGCGTGTGAAATTTTATCCCTGTAGTGTCTGTACAAATTCTTACAGCACTCCCCAGAAGTTGTCCGAGCATGTTCAACAAGCTCATCCTGGTGTTGGATCATTTGCTTCTGGAGAATCAGAGTTTTACTGCGATATTTGTATAAGATCCTTCAAGAGTCGCCAAGCTTACTCGAATCATATGCGTATACACGCAAAAGTTCCTACAACAAACAGAAGGCCAGGAGATCCGAAAAGTTTTGCACCACAAATCATCGGTAAACCCATTAAACAGTACACAATTCAACCGCAACCGCAACCTAACTTTGCAGCGTTCAAGCCTAATTGCAATGTTCCTAATGCTCCTTATTCATGTGATATCTGTGGTAAGGGATTCATGCACAAGAAAAATATATGGAAACATAAAAAAGTACTACACGCAGATGTTGTTAATGATAGCGAAGAGAATACCATGCAAGGGTCTACTGAAGAGGATGAGTATAACCCTGATGAAAATGGCGCTATGCTGTCTACACCCCAGTTCAATAGCTTTAACTTCTCAAACTTCAACAATATGCAACAGCAACAGGACCCAGCGCCTTTTTCATGTGAACTTTGCTTTAAGAGATTCCCACTCAGAACTAGTTTATGGAAACATAAACGAGCTAAACATGGAATAGTTAACATCAGTGCCGGTGGCACCGAGATAAAGACAGATATACCCAATGAAGCGGGAAATAGATCGAGTTGCACTATTTGTCAAATTTCGTTTTCAGACAAGAAATCTTACTATCGTCACAGAAAAAATGTTCACAAATCCACTGCGCAAATGTGTAAAATATGTGGAAAACCATTAAACTCAACTTTGGAATTGTATGAgcatttaaaatctgctcacgCTCGAGAATTATTAGGCTACAACTCCTCACAAGGGTCCAGCAAAATGACTGAAATAAAACAGGAACTCAGCTTAGATTATGACCATGACCAAGAATCCCTGGATCCTAGTGTGGAATATCAAGCGCGTTATCCTTGTGGTGCATGTGGTAAACAGTTTGTGGGACTGCTAGCCTTACAAAACCATCAGTGCATTAACCAACTTCCATCACAACAACAACCGCAAACCTTTGATTGCGAGATTTGTCACAAAAGTTACACATCAATAGCTGCTCTGAAGAGTCATCGTGGTTGGCATTTGCGCTCGCCAGACGGCAAAGCGGCGGCCAACAACTCAGGACTCTGGATGCCGCATaataaagttacaaataaagttAGTAAACACGAGGTGCTGGATCCGTCTCAGTTAGCGCGCGTGCAGCACTCCACGCCTGCGACGGTTGCGAAGAGGAGGCTGCCTCCTGAAGTTGAAGTCACCGTCGTCaaccctaataaaaaaatgCGTTCGGATGACTCGGTAGAATTCGATCAGCAGAACTCTTCAAACGCCGAGGATAAGTATTGTACAATATGTGACAAAGAGTTTACAAAGCGCGCGGCCTATCAGCGCCATATGGACGAGGTGCATCAGCCCAATTCGGTGTTTTGTCCTGTGTGCGACAAAAGCTTCACACGGAAATCGACGTTGTTGGTGCATATGAAAAAACACTACGAGAGTGGGGAGTGTAGTTCCGCGGAGACTGCTCAGTTGGAGGATGATGTTAACGCCTGCGACTTATGTGGGGCACAGTATGATAGCGAGCAAGCTCTGAAGGCGCATAAGGTTAGGCACCACGGAGAAGAAGAAGAATCTGGAGAGTCTGACGACGAAGGCAGCGTGCCTATAGCGCAGCCTGGAGAGTTTACATGTGCTCAGTGCGGCGACGGGGTAGCTACGCCGCGAGACCTCATTGCCCACCGTTCGATGCACGCCACACCCACCAAATTCTTCTGCAACATATGCAAAGTGTACTTTGCAAGGGCATTGGATCTTTCGTCACACACGCGTGCGAGGCACGCGGACAACGAAAAAGTGTTCTTCCCATGTGCTATGTGTGACCGTTTCTACATGAATAAGAAGAGTTTACAGCGACATATTGAGATGGCCCATTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDESDPHVLASKIKDCVSVQINENDDLPTNVCKKCVDNVNNWHIFKSVCEKTQNKLEFLIKKDGDQLEEINIKNEPLSDEAYDDGVMIDGSYPDNDNAASSKVQPEGPPILASLGLTPRSDKKYIDPRMDWQRVHAILDMVQDDDVIDSLQSIEECDVVQQSNHNSESEGELLSEIDDSFIDCKDGYRTRNNTVKLLSRAPKVSTTSNKAKIKTASNLRKRKLEEIKNCLQPKHAWQLLFTDDILELIVNSTNNNILKMGHNIESSTSIGEIKTLIGILYLHGVMRPTHQKANDLWEANFGVPCVRSAMKYERFKFILQNICFDNDEDNIIRFDIMKRMRKVFEIFAMNCRTSYTISNTAVIDEVMVPVYGPCPFRYEIKKKSLKKGLKLVLLVDPNTFYVSNLDVITDPFFAADEIVKKIVQHLNGTGKTIIMDSWYTTLDLIKSLAKDSKLYSIAAINPSDDIIPPLFMSRYRKIRTFLTGFLDNDILVTSYLNEESKSVNVMTNEPTFYKRGHANHTTAVAAYKKNQSAVEGVESDKDEDEEEEEDEDLTEVAQPVPKVPNMPEVSITVMRSSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHGFDRYTNKITKKKSHTHMQPKLRPNPFNPKSRLLPNPINHKMQFMGKPIPNKIASHKIITPPKPILIKSFREQRSNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSCPESPETLISEPELATFQVETILSEPDAFDNTDGYDPQQDYDAQQDSFDQGQNSYEHEDSYDQQHDEYDQQGCDDAEDGDITNNQNQNYDTVDMESDNEIEIARNKQSAKVENDEEENAHKNDEEHHKDGDQNETEETNTVKDAMNPTSDENEEILDKNAVPENIDNEEKDHEEQDNNHEETMEDDDDLPLMDLAPVVEINEEMRGNSCNSEQNDEEEEELADTSEVNDTTEGTEGVQEIDPNKLYVTKTQREFIKKYRNIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNDNGITDDLVLQNPVINKAQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLHCVHCGVRFKDKSLIKKHIRNGECTVYIACDLCPEKFRHLQEFNDHALAVHADSYDQSDNQNKCVDERPTDCPICGKKNSSYPNLIKHLKIIHNEEKPHHCQHCDLKFEQSTDLNKHIYMEHSDRSLGVQSNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCTNSYSTPQKLSEHVQQAHPGVGSFASGESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRRPGDPKSFAPQIIGKPIKQYTIQPQPQPNFAAFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADVVNDSEENTMQGSTEEDEYNPDENGAMLSTPQFNSFNFSNFNNMQQQQDPAPFSCELCFKRFPLRTSLWKHKRAKHGIVNISAGGTEIKTDIPNEAGNRSSCTICQISFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKSAHARELLGYNSSQGSSKMTEIKQELSLDYDHDQESLDPSVEYQARYPCGACGKQFVGLLALQNHQCINQLPSQQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPHNKVTNKVSKHEVLDPSQLARVQHSTPATVAKRRLPPEVEVTVVNPNKKMRSDDSVEFDQQNSSNAEDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYESGECSSAETAQLEDDVNACDLCGAQYDSEQALKAHKVRHHGEEEESGESDDEGSVPIAQPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -