Sgig043156.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012550.1:33328472-33338338[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 47 0.58 1.5e+02 5.2 0.3 1 23 23 45 23 45 0.96 2 47 0.13 32 7.3 0.1 2 23 73 95 72 95 0.89 3 47 0.89 2.3e+02 4.7 0.6 2 21 116 135 115 138 0.90 4 47 0.00052 0.13 14.8 2.4 1 23 143 166 143 166 0.93 5 47 0.0044 1.1 11.9 1.0 1 23 170 193 170 193 0.94 6 47 0.26 66 6.4 1.3 2 23 196 218 196 218 0.96 7 47 0.039 10 8.9 0.2 1 21 224 244 224 245 0.96 8 47 0.014 3.5 10.4 4.9 1 23 296 319 296 319 0.96 9 47 8.3 2.1e+03 1.6 0.3 2 23 345 367 344 367 0.88 10 47 1.4 3.6e+02 4.0 3.9 1 23 389 412 389 412 0.95 11 47 0.02 5.1 9.8 0.2 3 23 419 439 417 439 0.87 12 47 0.00057 0.14 14.7 1.6 1 23 444 467 444 467 0.94 13 47 0.0042 1.1 12.0 0.4 2 20 473 491 472 493 0.95 14 47 0.18 47 6.8 0.6 1 23 529 551 529 551 0.97 15 47 4.4 1.1e+03 2.5 2.2 1 23 620 643 620 643 0.95 16 47 0.041 10 8.9 8.6 1 23 648 670 648 671 0.95 17 47 0.023 5.8 9.7 4.0 1 23 675 698 675 698 0.95 18 47 3.5 8.8e+02 2.8 0.7 2 23 701 723 700 723 0.94 19 47 0.034 8.8 9.1 0.3 2 20 730 748 729 750 0.93 20 47 0.0057 1.5 11.6 1.4 1 23 804 827 804 827 0.94 21 47 3.5 9e+02 2.8 0.1 2 23 856 878 855 878 0.94 22 47 0.00014 0.035 16.6 0.4 1 23 900 923 900 923 0.95 23 47 0.00061 0.16 14.6 0.1 3 23 930 951 929 951 0.94 24 47 0.0005 0.13 14.9 2.2 1 23 956 979 956 979 0.92 25 47 0.00057 0.15 14.7 0.5 2 23 985 1007 985 1007 0.96 26 47 0.0092 2.4 10.9 1.1 1 15 1011 1025 1011 1028 0.87 27 47 0.0047 1.2 11.8 3.1 1 23 1075 1097 1075 1097 0.96 28 47 0.077 20 8.0 0.2 2 23 1125 1147 1124 1147 0.91 29 47 0.17 44 6.9 0.5 2 23 1168 1190 1167 1190 0.95 30 47 0.1 27 7.6 3.0 1 21 1195 1215 1195 1218 0.91 31 47 0.00051 0.13 14.9 2.8 1 23 1223 1246 1223 1246 0.96 32 47 0.002 0.52 13.0 0.4 2 23 1249 1271 1249 1271 0.96 33 47 1.7 4.3e+02 3.8 1.9 2 20 1278 1296 1277 1298 0.93 34 47 0.00089 0.23 14.1 0.8 1 23 1352 1375 1352 1375 0.92 35 47 0.00013 0.032 16.8 0.2 3 23 1478 1499 1477 1499 0.94 36 47 0.039 10 8.9 6.1 2 23 1504 1526 1503 1526 0.94 37 47 0.015 3.9 10.2 3.0 1 23 1531 1554 1531 1554 0.97 38 47 1.8e-05 0.0047 19.4 4.2 1 23 1558 1581 1558 1581 0.97 39 47 0.0022 0.55 12.9 0.3 2 23 1588 1609 1587 1609 0.96 40 47 0.00012 0.031 16.8 1.6 1 23 1615 1637 1615 1637 0.98 41 47 0.053 14 8.5 0.1 2 23 1805 1827 1805 1827 0.94 42 47 0.049 13 8.6 3.3 1 23 1832 1855 1832 1855 0.92 43 47 0.0034 0.87 12.3 1.3 1 23 1858 1881 1858 1881 0.97 44 47 5.5 1.4e+03 2.2 5.3 1 19 1886 1904 1886 1909 0.93 45 47 0.11 28 7.5 2.9 1 23 1913 1936 1913 1936 0.97 46 47 0.00012 0.03 16.9 0.4 2 23 1943 1964 1942 1964 0.97 47 47 0.00034 0.086 15.4 0.6 1 23 1970 1992 1970 1992 0.97
Sequence Information
- Coding Sequence
- ATGAGAAGAAACATTCAATTGATACTGACCAACACCTCATTGGTTCCGTTTAAATGGCGTGGGAAATATATTTGCTTTTACTGCGGTATTGACGTTGATGGTTATGATAGTTTAATGGAGCATACACATAGTCATACGAGTAAGGAGCAGGATTTTGCTTTGAGATCGTTGAAAGGTAAAGAGCAGGAGGTAAAATTTGATATTTCCGGCGGCATTTCTTGCAAGATCTGCCAAGAATCTTTTCAACGCATCGGTGATATTACTACTCATTTAGCGGACGAACACAAATTACCATATGATAACAAAATAGAAATGGATATGGCGCCATATCGCCTGGCTGAATTGAAATGTATCGTATGTGACGAGAGCGTTGAAAATCTGTTTCAACTCATCAAACACATGAACTGTATGCATCCGAAGAAATGCTTCACCTGCCCAAAATGTGGGAAAAAGTTCAACAAAGTTAGAGATCTTCGTTCCCATAACAATTATTACCATCGGGATGTTTACGTTTGTAAATTGTGCAATCTGAAGTTCAGTGACAGAGTTAGTTACTTAAAACACAAGGTTAGGCCTCATGTCGCCACTTGCGTCATTTGTTTTGAAAAATTTCCTTCGAACAAAAAGAAATTGCAGCACATGAATCGCGAACACTTTCAAAATTCAGATTTCAGATGCGGCTTTTGTCGTAAGGATTATGCTAGCAAAATAGCTCTAATGAATCACGTCAGGCAATGTAAAAATATGACAATACACGAATCAAGTTTCCGATTTGCCAAAATAGATGTAAATAATAGAAAACAGGTTTCTAgccaaattaaaactaatcttatgTGTATTTTTAATATGTCCACAGCAATACCTTTTAAATACGGCAATGGAAGATTTAAATGCTTCTTTTGCAATAAAGATTTCAAAGATTGCTTGGATCTCAGGAAGCACACAGAATCCGAACATCCAGTTTGCGAAGAAAACGACCTAAAATGGATGAGACCTGTCAACTACCAGTTGAAACTGGACATCGCTACCTTGTCTTGCAAACTTTGCCAAAGGCAGATTCACGATTTGGATGCTTTGATCACTCATTTCATTGAAGACCATAAAACTGACTACAACCAATCTGTTAAGCATATCATACAACCCTTTAAGTTGCTAAGTGGAAATTTTCAATGTCAATATTGTGAAAATAATTTCACAGAATTTGGAGTTCTGTGCAATCACATACTCCATAATCATAAACCTTACCACGTTATCTGTACGTATTGTGGAAAACCGTTCAACCGTACTAGTATAAAGATTCATATCGCATTAAAGCATAATCCAGATGGTTTTAAATGTGACGAATGTAGCTTGGAATTTAATACGAGACATCTTTTGAAGAGCCATATGGGCAATGTTCACGGCCTAAAGACGGTGAAATGCAAAGTGTGTTCGGAAAAGTTTACAACACCGCACGTTATGAGGAGGCACATGATCGATGAAAATGGGCCGGCAAAAGGGCGGCACGCTAATAGAAAAAGGAGGCGAAATctacaaatattgttcaacaACACGTCAATAATACCTTTTAAATGGCGTGGAAAATTTATGTGCTTTTATTGTGGCGACGACGTCCAGGATTATAGTGAACTAAGGAAGCATACCAAATGGCACGGTTCTTGTTCCATCAATGATAAGGCTATAATGTTAGTTTTGCAAAATTCTGAAGTCAAAATTGACGTATCTGACATTGTTTGTGAACTGTGCAGTGAAACGTTTATTTGCCTCGACGACATAATTGATCATTTGATTTCTAAACATAAGCTGTCTTATGATAGAGATGTTGATATGACTATAACTACTTATAGACTTCTGGACTTTAAATGTGTGTTATGCAATGAAATGCAAGAGAATTTTAGCCGTTTGGTCAAGCATATGAATCACAGTCATCCTGTAAATTGTTTCACGTGTAATGATTGCGATAAGACGTTCAATAAGAAACGGGATCTTTTATGTCATTGGCGTCATCACCACAGAAAGCAgtataattgtaaaaaatgtCATCTTAATTTTCCTAATCACGCTGCTTTAAAGAGTCACAAAGCGCGATCTCATATATCGACATGTAATGTTTGCTTCGACACTTTTTCTTCAGACAGTAAAAAATTGGATCACATGAAAGAAGCTCATATCGATCAATACTCGTTGGAATGCGGTTTCTGCAACAAACAATTTAGAACAAAGCTTGCACTGTTAAACCACACCGGGAAATGCAAcgttaaacaatataatgtggATGTAGCAGTGTATGAAGGGCAAGAACCTATAGATGAAGTCGATAAAAAACCATCTGTGGCTGAGATAAGAAGCAATATTGCATGCATAATCAACATGTCAACCGCATTGCCATTCAAGTATTTTATGAATAAGTTTAGGTGCTTTTATTGTCCTAAGGATTTTATAGAATGCGATGATCTCAAAGAACACACAGTTATGGAACACCCGTCCTGTAatagtaaatttaaatatttaaggcTTCGAAACGCAGAGTATGgtattaaaatcaagatagaCGTGTCTTCGCTGTCTTGTAAAATGTGTTTCGAACCAATGCAAAATTTGGAGACTTTGATAAATCATTTGATAACAGAACATAAAGCACAATATGACAAGTCTATCGACAACAACATGCAACCTTTTAAACTCGTTAGGGACCATTTTGCGTGTCCATTTTGCGATGAAGTGTTTAGGTACTTTAGCACATTGTTGAAACATATTGGCACGAGTCATACGGAAAATAAGAATATTTGTTCGTACTGTGGGATTTCGTTCCGAACGGATCCCAGCTTGAGGGCACATATATCCTTGCGCCACAAGCCGAACGTTCACAAATGTAATGTGTGCGAAAAGGACTTCACCACGAGACACGCTCTACGCGACCATTTGGGTAACGCGCACGGCAACAAAGTGGCCAAGTGTCAGGTTTGTTCGGAAAGGTTCACATCTCAATACGCTATGCTGAAGCATATGATCAGCGCTCATGAAACTGGACATAAGTGCTCGTATTGCGGTAAAATGTTCACCAAGAACTCCTTCATGACGGACATTGACAGCGGGCTAAATTTGTTTTCAGATGAAAATGCACCGGCACCTTACGAAGGATGCGCCTCAGAGCGTAGGAGGAAAAACTTGCAAACGTTATTCAACAACACCACCGTGCTGCCATTCAAATGGCGCGGCCGATACCTATGTTTCTATTGCCCTAAGAACTGTAAAGATTACGAAGAATTACGAAATCACACGATGTCTCACGGCTCTTGTACCACCAAAGATTATTCTTTAAAAGTCATTAAAGGAaaacacatagaaataaagataGACGTGTCGGAAATCacttgtgagatttgcaacgAACCGTTTTGTAACCTTAACGAGATAATAGATCATTTGATTGGAAAGCATAAAATGGACTTTGACAGAACGGTCGACATACCCATCCAAACCTACAGACTAAAAGATTTGACTTGTTTATTCTGCCAGGAGAAGTTCTCTTATTTCGGCTTTTTAATAAGCCACGTAAATATATCCCACCCCAAGAACTGTTTCATTTGCGATGATTGCGGAGCTACTTTCAATAAGAAAAGGGATTTAGCTTTTCATATTAGATGCCATCATAGAAAAGGTGGATATCCCTGCGACGAATGTACAAagcattttgtaaatttttacttaTTGAAAAGACATAAAAACAATGTGCACTGCAGGAAGTGTAACAGTTGTAACCTCCGTTTTGTGTCTTTGGCTCTACTCCAAAAGCATATATCTATGGAGCACCCTAATGATGGCACCCTAACTTGTGAGTTTTGTGCAAAACAATGCTATTCATCACAAGGGTTGAATAAACACAGAAGTCAGTGCAGAGTTAAATTTGTAGTGTCTTCTACAGAAACTGATAAGCATTTTCCCTTAGACAACGTGGAGCTTAAAAAAAGGCAAGACGTCAAACAAATTCGCAAGAACATACAGTGCGTTTTAAACATGTCCACTGCGGTGCCGTTTAAGTTCTTCTCGAAATTTTCGTGTTTTTATTGCGGAAAGAAATTTGTAGAATTCGACGAACTCAAAACACACACGGGCATCGAGCATCCTACTTGCGAATTGAAATCGAAATCAATGAGAAAGTGTAAAGGCGAAAGGGTTAGCGTCAAAATAGATGTGAATGGCCTGTCGTGTAAAGTTTGCGGTCAAAAAGCGGATTCTCTAGACATTCTGATAGATCATTTAATATTAGAACATAAAGCGGACTACGACAAATCGATAATTGGTTGTTTGGAGCCTTTTAAAGTTATGAAGGACAACATACCTTGCCCTTTATGTTCAGATCGAGTATTCAGATATTTCGGCATTCTACTCCGCCATTTGAACTCTGACCACAGCAACAATAATAGGATATGCGATTTCTGCGGCCGCAGTTTCAAGAACGTTGCCAATTTGAACGTACACATTTCATATACGCACACCGGGTCGTGTGAATGTAGTATTTGCGGATTGAAGTATAAGAATCAGTGGTGTTTGGCACGTCACCGGGCCAAATGTCACAACGCGAAAGATTATAAATGCCCAAAGTGTGCGGAACAGTTTCAGTCTCAGTATCACAAGCAAAAGCACCTGATCAAGGTTCACAATATAGGGCATAAGTGCGAGCAGTGCGGCAAGATGTTCACCAGGAACTCGTTCATGAAAGATCATATACGCAGGACGCATCTGCGAGAGAAAAATGTTCCGTGCTCAGTTTGTAGTGAGAAGTTCTTCGATAACTACTTACTCAGGATGCACATGGTCAAGCACGATGGCGAGAGGAGGTTCAGCTGCAGTGTTTGCGGCAAAGCCTTCTTGAGACGCAGCAACCTCCACTCGCACTTGGAAATGCATAAAAAACTAATAATAAGTCAGAATGCGTCACTGACTATTATTCATTTGCTAATTTCAGATGAAAATCGGCCAGCAAAACCCCTTACAACCAAAGACTCTCACACGTCGCCACAAGCAATAAGCAAAACGTGTAGAACCTTCAACACTAAAAGGCGCGACTTAGCCGCTATTCTTAACGCGTCTAACGCAGTacctttcaaatattttctcaaTAAATTCCGCTGCTTCTTTTGCCCCGAACTCAGTGACGATTTTGATGTCATCAGATCTCATTATCGGTTCGAACACGACGTCCCCATAACAGACAAGTTCCTCCAATTCGTCAAAGGGAACGATGTCAAAATTAAACTGGAGATATCTTCGCTCGGGTGCAAATTGTGCGACGCTCTTTTATCCGACTTAACATCTTTCGTCGACCATGTAACTTCAGTGCACGATTTCAAATGGGATCCGCAAAACAACTCCATGTTTGTTACGTTCAGAATACGAAAAGGCCACAACGAATGCCCGATTTGTTTGAAGCCTTTTGTGTATTTCACAAAAATGTTGGCGCACATGAACGATGAGCATTCGAACAGCGAGTTTCTCTGCGACATTTGCGGTCGCACCTTCATGAATAAGCACAACCATGCGATACACATATCCAGGTTCCACAGACGACACAAGTGCAACGCGTGCGACGAGAATTTCCAAACCGTGTCTAAGCTAAGAGTCCATCAGAAGGTCGTGCACAATCTAAAGCGTTATAAATGTGCTCAGTGCGACCAACATTTCGAATCGCACTACTTGAAACAGAAGCACTGCATCGAAGCTCACGGAGGCGGCTTCACTTGCGTTTACTGCAAATCCAAGTTTACCAAAAATTCGCGGTTGGTGTATCACGTAAATAGTAAGCATCTCAAAGAAAGGAACGTGCAGTGTGCCGTTTGCAATGAGAGGTTTTTCAATAATACTAATTTGAAAATTCACATGGCCAAGCACGAGGGCTCGAGGAATTTCCATTGCGACGTATGCGGCAGAGCGTTTATATGGAAGAGGAATCTTAAAAGTCATATGGCTGTGCATAATGTAAAGCGCAGTAAATAG
- Protein Sequence
- MRRNIQLILTNTSLVPFKWRGKYICFYCGIDVDGYDSLMEHTHSHTSKEQDFALRSLKGKEQEVKFDISGGISCKICQESFQRIGDITTHLADEHKLPYDNKIEMDMAPYRLAELKCIVCDESVENLFQLIKHMNCMHPKKCFTCPKCGKKFNKVRDLRSHNNYYHRDVYVCKLCNLKFSDRVSYLKHKVRPHVATCVICFEKFPSNKKKLQHMNREHFQNSDFRCGFCRKDYASKIALMNHVRQCKNMTIHESSFRFAKIDVNNRKQVSSQIKTNLMCIFNMSTAIPFKYGNGRFKCFFCNKDFKDCLDLRKHTESEHPVCEENDLKWMRPVNYQLKLDIATLSCKLCQRQIHDLDALITHFIEDHKTDYNQSVKHIIQPFKLLSGNFQCQYCENNFTEFGVLCNHILHNHKPYHVICTYCGKPFNRTSIKIHIALKHNPDGFKCDECSLEFNTRHLLKSHMGNVHGLKTVKCKVCSEKFTTPHVMRRHMIDENGPAKGRHANRKRRRNLQILFNNTSIIPFKWRGKFMCFYCGDDVQDYSELRKHTKWHGSCSINDKAIMLVLQNSEVKIDVSDIVCELCSETFICLDDIIDHLISKHKLSYDRDVDMTITTYRLLDFKCVLCNEMQENFSRLVKHMNHSHPVNCFTCNDCDKTFNKKRDLLCHWRHHHRKQYNCKKCHLNFPNHAALKSHKARSHISTCNVCFDTFSSDSKKLDHMKEAHIDQYSLECGFCNKQFRTKLALLNHTGKCNVKQYNVDVAVYEGQEPIDEVDKKPSVAEIRSNIACIINMSTALPFKYFMNKFRCFYCPKDFIECDDLKEHTVMEHPSCNSKFKYLRLRNAEYGIKIKIDVSSLSCKMCFEPMQNLETLINHLITEHKAQYDKSIDNNMQPFKLVRDHFACPFCDEVFRYFSTLLKHIGTSHTENKNICSYCGISFRTDPSLRAHISLRHKPNVHKCNVCEKDFTTRHALRDHLGNAHGNKVAKCQVCSERFTSQYAMLKHMISAHETGHKCSYCGKMFTKNSFMTDIDSGLNLFSDENAPAPYEGCASERRRKNLQTLFNNTTVLPFKWRGRYLCFYCPKNCKDYEELRNHTMSHGSCTTKDYSLKVIKGKHIEIKIDVSEITCEICNEPFCNLNEIIDHLIGKHKMDFDRTVDIPIQTYRLKDLTCLFCQEKFSYFGFLISHVNISHPKNCFICDDCGATFNKKRDLAFHIRCHHRKGGYPCDECTKHFVNFYLLKRHKNNVHCRKCNSCNLRFVSLALLQKHISMEHPNDGTLTCEFCAKQCYSSQGLNKHRSQCRVKFVVSSTETDKHFPLDNVELKKRQDVKQIRKNIQCVLNMSTAVPFKFFSKFSCFYCGKKFVEFDELKTHTGIEHPTCELKSKSMRKCKGERVSVKIDVNGLSCKVCGQKADSLDILIDHLILEHKADYDKSIIGCLEPFKVMKDNIPCPLCSDRVFRYFGILLRHLNSDHSNNNRICDFCGRSFKNVANLNVHISYTHTGSCECSICGLKYKNQWCLARHRAKCHNAKDYKCPKCAEQFQSQYHKQKHLIKVHNIGHKCEQCGKMFTRNSFMKDHIRRTHLREKNVPCSVCSEKFFDNYLLRMHMVKHDGERRFSCSVCGKAFLRRSNLHSHLEMHKKLIISQNASLTIIHLLISDENRPAKPLTTKDSHTSPQAISKTCRTFNTKRRDLAAILNASNAVPFKYFLNKFRCFFCPELSDDFDVIRSHYRFEHDVPITDKFLQFVKGNDVKIKLEISSLGCKLCDALLSDLTSFVDHVTSVHDFKWDPQNNSMFVTFRIRKGHNECPICLKPFVYFTKMLAHMNDEHSNSEFLCDICGRTFMNKHNHAIHISRFHRRHKCNACDENFQTVSKLRVHQKVVHNLKRYKCAQCDQHFESHYLKQKHCIEAHGGGFTCVYCKSKFTKNSRLVYHVNSKHLKERNVQCAVCNERFFNNTNLKIHMAKHEGSRNFHCDVCGRAFIWKRNLKSHMAVHNVKRSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -