Sgig036812.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012548.1:36077051-36091841[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 4.5e-05 0.012 18.2 0.0 1 23 111 133 111 133 0.96 2 26 7.9 2e+03 1.7 1.1 5 23 141 160 138 160 0.90 3 26 6.7e-07 0.00017 23.9 1.0 1 23 235 257 235 257 0.98 4 26 0.00029 0.073 15.7 0.6 1 23 263 285 263 285 0.98 5 26 0.0023 0.58 12.8 1.4 2 23 292 313 291 313 0.96 6 26 0.0012 0.31 13.7 0.3 1 23 319 341 319 341 0.97 7 26 0.00024 0.061 15.9 1.2 1 23 347 370 347 370 0.95 8 26 0.00038 0.096 15.3 3.3 1 23 378 400 378 400 0.98 9 26 3.4e-06 0.00087 21.7 2.5 1 23 406 429 406 429 0.96 10 26 0.00041 0.11 15.2 0.8 1 23 436 459 436 459 0.97 11 26 0.028 7.1 9.4 0.3 1 23 465 488 465 488 0.89 12 26 0.0013 0.33 13.6 2.1 2 19 492 509 491 512 0.94 13 26 0.00033 0.083 15.5 0.5 2 23 516 537 515 537 0.92 14 26 4.6 1.2e+03 2.4 3.6 2 19 546 563 545 568 0.90 15 26 4.5e-05 0.012 18.2 0.0 1 23 644 666 644 666 0.96 16 26 4.3 1.1e+03 2.5 0.3 5 23 674 693 671 693 0.90 17 26 6.7e-07 0.00017 23.9 1.0 1 23 761 783 761 783 0.98 18 26 0.00029 0.073 15.7 0.6 1 23 789 811 789 811 0.98 19 26 0.0023 0.58 12.8 1.4 2 23 818 839 817 839 0.96 20 26 0.00079 0.2 14.3 0.3 1 23 845 867 845 867 0.97 21 26 0.00023 0.06 15.9 1.5 1 23 873 896 873 896 0.95 22 26 0.00035 0.09 15.4 6.3 1 23 904 926 904 926 0.98 23 26 0.019 4.7 10.0 1.8 1 23 932 957 932 957 0.96 24 26 5e-05 0.013 18.0 0.3 1 23 963 986 963 986 0.93 25 26 0.00029 0.075 15.6 2.4 2 19 990 1007 989 1010 0.94 26 26 0.04 10 8.9 0.4 5 23 1017 1035 1011 1035 0.89
Sequence Information
- Coding Sequence
- ATGGACCGAAATTCCTACAGGCTTGCAGTATCACTGCGCCTGGGCATATCGTGCTGTGTTCCACACCGTTGCCATTGTGGTATTGCTGTCGAACAACTCGGTCACCATGGCTTTTCCTGCATTAGAAGTGCTGGAAGGATTCCCCGCCATTCCAGCCTTAATGATATCATACGTCGGGCTTTTGTCTCCGCCAACTGTGCGGCTATTTTAGAACCCAATGGTCTCACGCGTGACGATGGTAAAAGACCTGATGGGATGACACTTGTTCCTTGGAAGATGGGTCGACCTTTGGTGCTGCCCAAATTCGACGCCAACCGTTTCATAAAGCGGCACGAGTGTCCGGAGTGTGGCGAGAAGTTTGTTCAGATGAGCACGTTGGAAGCTCACGCCGCCGTACACACGCCGCTGCCTCACGTGTGTCACTGCGGCATCGGATTCTACGTCGTGCAGGACCTGCGCACCCACAAGTCCCTGGTGCACTCCGCGGAAACGGAGAAAACACCGAAATTAACTTTTAGACAACAGAGAAAATTGAAAAACGAAGCCTGGGTACCAAAAATTAACTACACCGGTCCTAAATATGAAAGTGATCTGGACGAGCCCAAAAAAGCGATTAAACCAAAACTTAATGCTGagcttaaaatcaagataaaaGCTGAAGGCGTAAAAAAAGTACCCTACAAGAGACGCTACAACGGCCCGTTCTATTGTAATTTGTGCGGCAAAGGGTTCACTCAAAAGGGATCACTTAACATACACTTGAAAAGGCACGCTGGCAAATTCGATTACGCTTGCAGGTATTGTGGGAAAAAGTTTATCACAAAACTTGCTATACAGTTACACGAGAGAACTCACACGGGCCATAAACCGTGCGTATGTAAGTTTTGCGCTAAAAGGTTTGCAGATCCCTCCGCTAAGGCTCGTCACGAGCGCACACACACGGGCATCAAGCCGTACGCGTGCAAGTTCTGCGGGATGCGTTTCAGCGACGCGAGCGGCCGCATAGTGCACGAAAAGCGACACCGAAAAGAGAAGACATTCGAATGCAGCGAATGTGCAAagaaattttataacaaaacggATGTTAAAAAACACATGGTGTCTATGCATACTGATGAAACTTCTCGTATATTCGAGTGTGATCATTGTCACAAGGGATTTAAGCTCAAGCAGTATTTGGTAATTCATTTGGCCACCCACGCGAGGAAGCTGGACTATGAATGCGAAGATTGTGGTAAGAAATTCATAACCAAGATTCATCTGAGAAGTCATATATTTAGGCGGCACAATAATCctgttaaaaaatacaaatgctCAGAGTGTGACAGGGAATATTTGTATAAGTCGGAGTTGCAACAACACATTCTACGTATGCATACAAAGACTCAGTCATATATTTGCGACGATTGTGGCAGGCTAATGTTCACCAAAACTGATTTGATGAAACACATAGTCTATAATCATTCTAAGATCAAATGTGAGCTATGTTTGAAAGCCTTTTGTCAAAAAAGTGATCTGAGAAAGCATAACTCCAAGCCTTGTGTTCGATGCAAAATATGCCAAAAGACTTTCGCGTCTGTAAAGAATTTGAAGGAGCATTCAGCCGAACATCCTAAAACCAGAAGCGAAATGGTCAGTTGTCAGCACTGCCCAAATCAGTACTATTCCGAGACCGCCTTAAAGAAACATTGCCAAGAGAAGCACGTGGACACATTACGTTATGAATGTCATGATTGTGAGGGCAAGGCTATATTCAACCTCCGCACTTTGTGGCACATCTCCGGCCTTCGGGTCGAAGTCCCTCATAAAAAAAACAGTGTCATAAATGCCAACTCTACGGCCATGCGTCCCGCTTCTGTCATGGCCGCCCTAGCCCGTATTTGTATTTGTAGGCTGCCCAAATTCGACGCCAACCGTTTCATAAAGCGGCACGAGTGCCCGGAGTGTGGCGAGAAGTTTGTTCAGATGAGCACGTTGGAAGCTCACGCCGCCGTACACACGCCGCTGCCTCACGTGTGGCACTGCGGCATCGGATTCTACGTCGTGCAGGACCTGCGCACCCACAAGTCCCTGGTGCACTCCGCGGAAACGGAGAAAACACCGAAATTAACTTTTAGACAACAGAGAAAATTGAAAAACGAAGCCTGGGTACCAAAAATTAACTACACCGGTCCTAAATATGAAAGTGATCTGGACGAGCCCAAAAAAGCGATTAAACCAAAACTTAAAATGGCTGAAGGCGTAAAAAAAGTACCCTACAAGAGACGCTACAACGGCCCGTTCTATTGTAATTTGTGCGGCAAAGGGTTCACTCAAAAGGGATCACTTAACATACACTTGAAAAGGCACGCTGGCATATTCGATTACGCTTGCAGGTATTGTGGGAAAAAATTTATCACAAAACTTGCTATACAGTTACACGAGAGAACTCACACGGGCCATAAACCGTGCGTATGTAAGTTTTGCGCTAAAAGGTTTGCAGATCCCTCCGCTAAGGCTCGTCACGAGCGCACACACACGGGCATCAAGCCGTACGCGTGTAAGTTCTGCGGGATGCGTTTCAGCGACGCGAGCGGCCGCATAGCGCACGAAAAGCGACACCGAAAAGAGAAGAAATTCGAATGCAGCGAATGTGCAAAGGAATTTTACAACAAATCGGATGTTAAACATCACATGGTGTCTATGCATACTGATGAAACTTCTCGTATATTCGAGTGTGATCATTGTCACAAGGGATTTAAGCACAAGCAGTATTTGGTACTTCATTTGGCTACCCACGCGAAGAAGCTGGATTATCAATGCGAAGATTGTGAGTGTGACAGGGAATATTTGTATAAGTCGGAATTGCAAAAACACACTCTACGTATTCATACAAAGACTCAGGCATACATTTGCGACGATTGTGGCAGGCAAACGTTTGACAAATCTAATTTGATGAGACACATAGTCAATAGTCATTCCAAGATCAAATGTGAGCTATGTTCGAAAGCCTTTTGTCAAAAAAGTGATCTGAGAAAGCATAACTCAAAGCCTTGTGTTCGAAGCAAAATATGCCAAAAGACTTTCGCGTCTGTGAAGAGTTTGAAGGAGCATTCAGCCAAACATCCTAATTAA
- Protein Sequence
- MDRNSYRLAVSLRLGISCCVPHRCHCGIAVEQLGHHGFSCIRSAGRIPRHSSLNDIIRRAFVSANCAAILEPNGLTRDDGKRPDGMTLVPWKMGRPLVLPKFDANRFIKRHECPECGEKFVQMSTLEAHAAVHTPLPHVCHCGIGFYVVQDLRTHKSLVHSAETEKTPKLTFRQQRKLKNEAWVPKINYTGPKYESDLDEPKKAIKPKLNAELKIKIKAEGVKKVPYKRRYNGPFYCNLCGKGFTQKGSLNIHLKRHAGKFDYACRYCGKKFITKLAIQLHERTHTGHKPCVCKFCAKRFADPSAKARHERTHTGIKPYACKFCGMRFSDASGRIVHEKRHRKEKTFECSECAKKFYNKTDVKKHMVSMHTDETSRIFECDHCHKGFKLKQYLVIHLATHARKLDYECEDCGKKFITKIHLRSHIFRRHNNPVKKYKCSECDREYLYKSELQQHILRMHTKTQSYICDDCGRLMFTKTDLMKHIVYNHSKIKCELCLKAFCQKSDLRKHNSKPCVRCKICQKTFASVKNLKEHSAEHPKTRSEMVSCQHCPNQYYSETALKKHCQEKHVDTLRYECHDCEGKAIFNLRTLWHISGLRVEVPHKKNSVINANSTAMRPASVMAALARICICRLPKFDANRFIKRHECPECGEKFVQMSTLEAHAAVHTPLPHVWHCGIGFYVVQDLRTHKSLVHSAETEKTPKLTFRQQRKLKNEAWVPKINYTGPKYESDLDEPKKAIKPKLKMAEGVKKVPYKRRYNGPFYCNLCGKGFTQKGSLNIHLKRHAGIFDYACRYCGKKFITKLAIQLHERTHTGHKPCVCKFCAKRFADPSAKARHERTHTGIKPYACKFCGMRFSDASGRIAHEKRHRKEKKFECSECAKEFYNKSDVKHHMVSMHTDETSRIFECDHCHKGFKHKQYLVLHLATHAKKLDYQCEDCECDREYLYKSELQKHTLRIHTKTQAYICDDCGRQTFDKSNLMRHIVNSHSKIKCELCSKAFCQKSDLRKHNSKPCVRSKICQKTFASVKSLKEHSAKHPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -