Sgig063935.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012559.1:5617872-5620095[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-07 0.00041 22.1 0.0 17 44 42 69 24 70 0.92 2 2 3.5 3.2e+03 0.1 0.1 12 23 148 158 145 160 0.77
Sequence Information
- Coding Sequence
- ATGCCccgaaaatataaaagaaagtccGGGGTCCAACCACGTAACATAAGTTGGGCGAAAAGCGACTTAGAAGCGGcgttatggccggtatacactttgtttatgGATTTGGAACGAAATGTGATGGGAATAAACCAAATTTCGAGGATATATGGTATTCCGGCGCGCACACTTCGTCGACGCCAAAAAACTAACAATACTAACATGACTTCCTTAGgtaaGCATCCAATATTAGGAATAGAAAACGAAAAGCGTATGGTGCGGCATATTAAAAAACTTGAAGCGGCCGGATTCCCTCCCTCCCGACAATCCATAAGAATGTTAGCATTCCAGTTTGCCGAGAAATTGCATATTAAACACAACTTTAATCGAGACACCCAAATGGCTGGACACCAATGGCTACAAAGTTTCTTGGAAAGAAACAAGGAGCTAGCGATCAGAGTTGCTGAAGGCTTGTCGATTGCACGTGCACAGGGCTTAAATAAAGAGGAAGTGGGCCGTTTCTACAACCTTCTTTTAAAGGTTCTTACTGAAAACGATCTGTTGGATAAGCCTGAACGAATTTTTAATATGGACGAAACCGGGATACAGCTTAATAACAAGCCTGGAAAAGTTCTGGCAACAAAAGGTTCGCGAGCAGTGAAAATGGTCACTTCAGCTGAGAAGGGAGAGACCATGACTGTAGTCGCTTGTTGTAATGCTATTGGCAATTTTCTTCCTCccgtatttataattaaaatcgtcAACAAGAAACCTGAGTTTTCTGAAGGCTTACCACAAGGTGCTAAGGTATTTATGAACAAACAGTCTGCATATATAAACACCGAACTCTTCAAAAACTGGCTTTTAGAACATTTTATCGCCAATAAGCCTTCAGGCAAAGTTGTACTAGTATTGGACGGCCATGCTTCACACTCAAGTGCAGTTGATATGCTCGAAGAAGCAGATAATCATGGTGTAATTTTATTGTGCCTCCCAAGTCACACGACATCGTCTTTACAACCACTAGACCGCGCAGTTTTCAAACCTTTTAAGACAGCAGTTACCAAAGAAACAAACCACTACATGCGCACCAATACCTCcaaaaaaataacccggtatacgaGTAGCATTGCTTCATTGATAGGAAGGGCTTGGCTTCGTTTTGCAACTGCTGCAAATGCGATAGCAGGGTTCCGAAGTACTGGAATTTACCCAGTTGATCCAAGTGCGATTTCTGATTCCGAATTCGAAATCGCTGGTAGAAGCTTCGCATCACAGGACGTTGATACTGAGGCAGTCCCATCTGTTGAGCCAAATGAAGAGGTAAGACCTTCGAAACACACCCTTAGAGAATCTCCATCTCTGATCGGCGAAAGTGCATTAGATGGCAATGATGAAGATGAGACTGATTGTGAAGAAACGGAAGCTGAGACACAAGCAATACCATCGACCAGTGTTAATATAGCCACTGAAATTGGTTCAAATTATGTGCCTGGAATAAATATACCCTCAAAAAATACTGCTGAGGTCGAAATAACGCCCTCTAAATTCCTTGCAGATGACGCGCCCGTACCTAATATCCCAGTACCTTTCCATAAAAGAGGTAAACAGTCGGCGGAGGTTTTGAACTCAAAATCGATAATCGAAGAAAAAAAGAGATATAAAGGAAAAAGCACTAAAGGAATACAAATTAAGTCTTCAAAAAAGGGAACAGGAAAAGAAAATGatccaaaaaatattatgaaagatGCAGGTGGTGAAACAAGTGAGAAAATACacgaaaaaaaaggaaatcttCAAGAAGAGAATCAATAG
- Protein Sequence
- MPRKYKRKSGVQPRNISWAKSDLEAALWPVYTLFMDLERNVMGINQISRIYGIPARTLRRRQKTNNTNMTSLGKHPILGIENEKRMVRHIKKLEAAGFPPSRQSIRMLAFQFAEKLHIKHNFNRDTQMAGHQWLQSFLERNKELAIRVAEGLSIARAQGLNKEEVGRFYNLLLKVLTENDLLDKPERIFNMDETGIQLNNKPGKVLATKGSRAVKMVTSAEKGETMTVVACCNAIGNFLPPVFIIKIVNKKPEFSEGLPQGAKVFMNKQSAYINTELFKNWLLEHFIANKPSGKVVLVLDGHASHSSAVDMLEEADNHGVILLCLPSHTTSSLQPLDRAVFKPFKTAVTKETNHYMRTNTSKKITRYTSSIASLIGRAWLRFATAANAIAGFRSTGIYPVDPSAISDSEFEIAGRSFASQDVDTEAVPSVEPNEEVRPSKHTLRESPSLIGESALDGNDEDETDCEETEAETQAIPSTSVNIATEIGSNYVPGINIPSKNTAEVEITPSKFLADDAPVPNIPVPFHKRGKQSAEVLNSKSIIEEKKRYKGKSTKGIQIKSSKKGTGKENDPKNIMKDAGGETSEKIHEKKGNLQEENQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01331427;
- 90% Identity
- iTF_01331427;
- 80% Identity
- -