Sgig044557.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012551.1:7926019-7928145[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-09 3.1e-06 28.9 0.1 1 32 15 46 15 55 0.93
Sequence Information
- Coding Sequence
- ATGTCCTCCTctactaataaatataaaaaacgaaAGAAGTGGAGTGAAGAAAATATGGCTGCTGCAGTACTTGCTGTTCGGGAAAGTAAAATGGGGTATTTGAAGGCGGCGAAGACTTATAACGTACCGAGAACTACTGTATTTCGGCTTGCAAATCAAAAAGAACTTTCAATGACAGAAGTTCTTTCAAAGAAGATTGGTCGCAAACCAGTGTTTGATGAAGCTTTTGAGAACATGCTAGTTAGGTACGCCCTTTTAATGGAAGATAAATTGTATGGTTTGACTCAAATGGATATGAGAAGAATGGCTTACCAACTTGCTGTTAGAAATAATCTGCCGAATCCATTTAAAGATGAAAAAGCTGGCAGATACTGGCTGAAGGGATTTCTCTCAAGGCATAAGCAAATATTATCCATGCGGAAGCCCTCTGGAACATCATTTGCAAGAGCAAATGGATTTACAAAAGAAAGAATGGACGAATTTTATGACAACCTTGAAAAAGTTTACGATGCAAAAAAATTTACGGCTGAACGAATTTTCAATGTAGATGAAACAGGACTATCTATTGTTCAATCTAAATATCCTAAAGTAATTTCTCGTCGTGGAAAAAAACAAATTGGAGCCATAACATCCGCTGAAAGAGGTTCCCTCATCACCGTAGTTACCTGTATGAGTCCTGCCGGGATCTATGTGCCGCCAATGATGATTTTTCCCCGCAAAAATATGAGcgaaattttaatgaaaggtGCTCCTGTGGGATCTATTGGACGGGCACATCCATCTGGCTGGATACAGACACATTTGTTTACGCAGTGGTTCCAGCATTTTATTGACTACGTGAAACCATCTGAAGCATCACCAGTTCTTCTCTTGTTCGATGGCCACTTTAGCCATACAAAAAACCTCGAACTCATAGATAAAGCAAGACAAAATCACGTAACCTTGGTTTCGCTGCCACCGCACTGCACACATAAAATTCAGCCCATGGATAAGGCCTTTATGGGTCCCCTTAAGGTGTATTACAGCGAGGAAATTCGTGTGTGGTTGCGTCAAAACAATAGACCTCTTACAGCTTATGATATTTCAGAATTATTTGGCAAAGCATATCGTAAATGCCAGACTGGAGAAATTGCTGCTAAAGGCTTCAGTATCGGTGGAATTTATCCATTTAATAGATACGTCTTCACGAAGTCAGACTATCTTGCAGCAGCTAATGATGTGAAACAGCACCAATCAAACATCAATGTACCATCAGATAAATCTACACCGATAATAGAACCACGTCGTCTTAGCACAAACTGTCAACAGGACATAATTGAAACGCCAAATTTATCACCATCCATTATATCCATACAGCCTGAAAAACAACCGAATACATTAGCATTGTTAGAACAGGTTGAACCAGATTTCAGTGAACCAGCAGGTCAATCGGCACCGACATCAAAATCTCGTCGTGTCAGCATAAATTGTTCTATTATAAATTCGCACGTAAATGAAGATCATTCTATGATAGAAAAAGAAAATCACCCAGGTTCGTCTCATAGTAGCTCTGTCACCACACCGTTTGAAATCTCGCCTGTTCCTATAGCTAGAAAACGTGCATCTGATAGAGGTCGCAAATTGGGAAAATCTGAAATTATTTCAAGTTCACCCTACAAAACTGAACTGGAAGAAGCAGAAAAGAGAAGGTTTGAAAAATTGAATAAACCAGCTAAACATGAAAATCAGGACAAAAATAAAGATCAAGGAAAGGGAAAAGGCAAAGGAAAAGGAAAAAATGAAAGGAAAAAGAAAGGAAAAGACAAaagaaattgtaataaaatgaatgaaaaagaGAAACAGAAAGATAAGACTGCCACTAAGAGAAAGATATTACAAGAAAATAATACGGACTATGATAGTGATGTCACATTAACATCAGATAAGTCAGAAGAAGAATTAGCTAAGGACGACAAGGTAACACAGCCAACAGATGACGATTGCGCGTGTTTCTTTTGCAATGGAAAATATGCAGATGATCAAAGGGGAGAGGAATGGGTTCAATGTTTCATGTGCGAAGGATGGGCGCATAGCGAATGTGCTGGCTACGACTGCGGTTGCTATGTGTGTGATTTTTGCAAAGAATAG
- Protein Sequence
- MSSSTNKYKKRKKWSEENMAAAVLAVRESKMGYLKAAKTYNVPRTTVFRLANQKELSMTEVLSKKIGRKPVFDEAFENMLVRYALLMEDKLYGLTQMDMRRMAYQLAVRNNLPNPFKDEKAGRYWLKGFLSRHKQILSMRKPSGTSFARANGFTKERMDEFYDNLEKVYDAKKFTAERIFNVDETGLSIVQSKYPKVISRRGKKQIGAITSAERGSLITVVTCMSPAGIYVPPMMIFPRKNMSEILMKGAPVGSIGRAHPSGWIQTHLFTQWFQHFIDYVKPSEASPVLLLFDGHFSHTKNLELIDKARQNHVTLVSLPPHCTHKIQPMDKAFMGPLKVYYSEEIRVWLRQNNRPLTAYDISELFGKAYRKCQTGEIAAKGFSIGGIYPFNRYVFTKSDYLAAANDVKQHQSNINVPSDKSTPIIEPRRLSTNCQQDIIETPNLSPSIISIQPEKQPNTLALLEQVEPDFSEPAGQSAPTSKSRRVSINCSIINSHVNEDHSMIEKENHPGSSHSSSVTTPFEISPVPIARKRASDRGRKLGKSEIISSSPYKTELEEAEKRRFEKLNKPAKHENQDKNKDQGKGKGKGKGKNERKKKGKDKRNCNKMNEKEKQKDKTATKRKILQENNTDYDSDVTLTSDKSEEELAKDDKVTQPTDDDCACFFCNGKYADDQRGEEWVQCFMCEGWAHSECAGYDCGCYVCDFCKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -