Sgig041346.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- bab1
- Assembly
- GCA_963935595.1
- Location
- OZ012550.1:14010090-14029488[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-05 0.067 15.0 0.0 1 38 405 442 405 448 0.86 2 2 6.1e-05 0.057 15.3 0.0 7 35 577 604 573 609 0.88
Sequence Information
- Coding Sequence
- ATGGCTGCAGCACCTCCACAGCAGTTCTGCGTAAGATGGAACTCTTATCACACGAATTTACAGGCGGTGTTCCCGCGACTGCTACTGACGGAGCAGTTCGCGGACGTGACGCTGGCCTGCGAGTCCCGCCAGCTGCGATGCCACAAGCTCGTGCTATCGGCCTGTTCCGCGTACTTGGAGCGGCTGCTCCTACAGAACCCTTGCAAACATCCCATCGTGCTCATGCGGGATATGAGGTTCAGTGAAATGCAAGCGCTTGTAGACTTTATGTACAAGGGTGAGGTGAATGTCACTCAAGAGGAGCTCCCTAGTCTACTGAAGTCTGCCGAAGCGTTGCAGATACGAGGCCTCTGCTCGAGCGACACCTCAAGTCTGTCATCAGACGTAGGGACCAAACCAGACACTAAGGACTTTACTGTTGCTAGCGAGGCGTTGGTTGCGCAGGCGCAACACACGGCGAGTAATGGCACTGTCCACCAACAACCTCAAAAGCCCTCGAGCAATCACACGATGACCACAACCAACGGACCCAAGAAACGCAAATCTGACGATGCGAGCGATGTTAAAGAGGAGACTGTGGAGGAAGACGGACTGTACTACGGCGAATTGGATAATGAGAACATGGAATACAATGAAgaCGAAGAACCGAGTAAACCGGGAAGCAGTCTTGGGCAAGCATCTGATCGTCACGCTTCTTACATCAGAGTTAAGCCAGAAAGCGAATTGTTCTTCCAGAACAAGCTACAGAAATTAGCTAAAGCCAATAATGACTATCTCAGTCGCTTATCTAAAATGAACCCAACGGAAATACGCAACGAATTCACCAAATACGGCTTCAGTACGACTGTCGCAGAGGATACGCAGAAGATTATAGAAAAAAATGAGAACGATTACTACAAATCATGGTTAGAGCAGAACGGAGAGTTAGAAGTGTCTCTTCTTAAAGCGGGCCAGAAGAGAAGAGAACCGAAGCCGCAAGCAAAATCGGAAGTCGAACTGATACCAAAATTAAAGGAATGCGCTGAAAAATCTCAGATAAGAAAGCGTGGCAGACCTCCACTGTTTAAGGATAGGAATTTGGATATAGGCGAGACCGTTCTCAAGTCTGATCTCGATCAGTTCCTCGAGGGTAAGGAGGTTAGCTCATCGGGCTTATCAAGGAAAGATCTGGAAAGGGTGATGATGGGAAAATTCAACCCGAACAGGAGGTATTCTAACGAAGCGATGTGGGCGGCTCTGATGGACGTTAAGAAAGGCGGAAGTATTTACAGGGCTGCCCAAACGCATAAAGTGCCGAGAAAATCGCTACGCAACTGGATGAAACGTTGCCACATTAAGTCCTCCTTCCCAATGCCGCAGCAGTTGAAACAGTTTGTCGAGAACAGCAAAAAACAAAAGGAGTATAAAAGCTTCGACAATTTTCCACCTGGTGATAACCCTGAATTTCAAAACTACGACAAAAGTGGAACAGAAACGGATGTAGCTTACGACGCTGAAATGGACTTTGGGAAACACTTTCTGATGAGCACTGTCTCTAGTGAGGATGAAGGAGTCAGGACGTCAACTGAGATAGTGACAAGGCATTTCATTGATGTGGATCACGGGATCCCGCTCAACATACACGCGAGGCCCCGCATCGTTGGAAGGAGACCGAACGCCATAGTCAACATAGAGACAGATGTCTTCCAAGAGAAATCCTATAAGCAATACTCCTCGCAACACCTCAGGGACGCGCTAATAGCGGTGAAGAAGGGCTACAGTGTGTACGCGGCATCTAACAAGTACGGCGTACCTAGGAAAACTTTGCGGAATTGGATGGAAAAGTATGACATAAAGAGTCAGTTCTCTAAAGGGCGTCGCGGGACAAGAACAGGTCAGATACTGGATCCGTTGGATTTAATGACCGAGACGAGGTCCGAAAGGTATGAGGACCCACTGTAA
- Protein Sequence
- MAAAPPQQFCVRWNSYHTNLQAVFPRLLLTEQFADVTLACESRQLRCHKLVLSACSAYLERLLLQNPCKHPIVLMRDMRFSEMQALVDFMYKGEVNVTQEELPSLLKSAEALQIRGLCSSDTSSLSSDVGTKPDTKDFTVASEALVAQAQHTASNGTVHQQPQKPSSNHTMTTTNGPKKRKSDDASDVKEETVEEDGLYYGELDNENMEYNEDEEPSKPGSSLGQASDRHASYIRVKPESELFFQNKLQKLAKANNDYLSRLSKMNPTEIRNEFTKYGFSTTVAEDTQKIIEKNENDYYKSWLEQNGELEVSLLKAGQKRREPKPQAKSEVELIPKLKECAEKSQIRKRGRPPLFKDRNLDIGETVLKSDLDQFLEGKEVSSSGLSRKDLERVMMGKFNPNRRYSNEAMWAALMDVKKGGSIYRAAQTHKVPRKSLRNWMKRCHIKSSFPMPQQLKQFVENSKKQKEYKSFDNFPPGDNPEFQNYDKSGTETDVAYDAEMDFGKHFLMSTVSSEDEGVRTSTEIVTRHFIDVDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGTRTGQILDPLDLMTETRSERYEDPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334026; iTF_01331823;
- 90% Identity
- iTF_01334026; iTF_01331823;
- 80% Identity
- iTF_01331823;