Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.3e-09 1.2e-06 30.2 0.0 2 41 19 59 18 61 0.89

2 2 3.5 3.3e+03 0.0 0.0 14 24 71 81 67 84 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.3e-09	1.2e-06	30.2	0.0	2	41	19	59	18	61	0.89
2	2	3.5	3.3e+03	0.0	0.0	14	24	71	81	67	84	0.83

Coding Sequence: ATGGTGCGAACTTATAAAAAGCTATTAGGATCCaggcaatataaaaattataaacaagaTAAAATTGAACAAGCTTTGAAGAAAATTGCAGATGAAGGCATGTCAATAAAATTAGCATCAGAAACTTTTAATATTCCATACGGcactttatataataaatataatggaCGGCATGTAAAATCTCCTGGCGCACAACCAGTATTTAGTCACAATGAAGAATTGTCAATTTTAAAAGCGGCAGCAAAATGTGGTGATTGGGGATACCCTCTTACAGTTATGGACTTAAGAGTTTTGGCAAAAGCCTTACTAGATCGGAAGGGACAGaatattattaagtttaaaaataacttgCCTGGAGTTGATTGGGCCTATAGTATTTTGAAGCGACATAAAGAAGCCTTTAGTAAACGAGTTAGTTCAAATATAAAACGTGCTCGTGCGGCTGTAACTAAAGAAACGCtcaatgaatattttaataatttggaaCGTTCAATCCAAAATGTTCCAAGTAGCAATATATTCAATTACGATGAATCAAATATGGCCGATGATCCTGGTAAGAAAGTTGGGATCTACCGCAGAGGTGTTAAATATCCAGAAAACCATACATAA
Protein Sequence: MVRTYKKLLGSRQYKNYKQDKIEQALKKIADEGMSIKLASETFNIPYGTLYNKYNGRHVKSPGAQPVFSHNEELSILKAAAKCGDWGYPLTVMDLRVLAKALLDRKGQNIIKFKNNLPGVDWAYSILKRHKEAFSKRVSSNIKRARAAVTKETLNEYFNNLERSIQNVPSSNIFNYDESNMADDPGKKVGIYRRGVKYPENHT

Sequence clustering based on sequence similarity using MMseqs2