Sgig011265.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012541.1:60215859-60217904[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-12 7.9e-09 37.2 0.1 1 40 15 55 15 59 0.92
Sequence Information
- Coding Sequence
- ATGGTAAAACAATACAAGAGAAAGACAAATAGAGGCGAGTGGTCGGAAGAGAGCATGAAAAAAGCTGTTGAAGCCGTTGTAGAAGGGAAAATGGGGTATATGCTAGCAGCAAACACATTTTCAGTACCTCAGACTACTCTAGAAAGAAAAGTAAAAAGAGCTCGCGAGAACTCGGCCCCATCATCATTTACAAGTAGTAAGGTGAAGGTTTCCTTAGGCCCCAAGCAACCTGTTTTTACAGAAGAAGAAGAGAACGAATTTTGTAGCTATATATTGGACATGGAAACTCGACTTTACGGGCTTACAACCAAAGACATAAAGGCATTAGCGTACAATTTagcagtaaaaaataataaagtccaTCCTTTTAATGTTCAGAAACAAGAAGCTGGCAAAGATTGGTTTCAAGGGTTTTTGAACAGACACCCAGAGTTGTCAATAAGAAAACCTGAAAGCACCTCTGCTGCGCGTGCTTCCGGGTTCAACAAAGAAGTTGTTGAtcaattttttagttttttgggCAACATCTATGACGAACATCATTTTACACCAGACCGCATTTACAACTGCGACGAAACTGGTATTTCAGTTGTACCAAAGACTAAATCCAAAATTGTAGCAAAACGAGGTCGAAAACAAGTAGGGGCATTAACTTCTGCAGAGAGAGGTGTTACAATCACAGTAGAGATATGCTTCAGCGCCAGTGGACAATACATTCCCCCTATGATGGTGTTTCCCAGGAAGAAGATGGACCCACAGTTAATGCTTAATGCTGCCCCTGGAGCATGGGGAGTTGTCAGTGACTCAGGTTGGATGACCACAGAGGTGTTTTTTGGATGGTTTAAGCAGTTTGTAAAATTTAGTGGGGCCACAGTACATCGACCTGTTTTGCTTTTATTGGATGGCCATAGCACCCATACAAAAAACATCgatttaattaatgaagctcGAGCCAATGGggtaataattttatgtttcCCCCCACATACAACTCATCGCCTTCAGGTCGCCGATGTTGTTTATATGAGACCGTTAAGCAATTATTATGATCGACAAATTACGACCTGGCTTCGCAGCAATCCAGGGATGGTTGTAACGATGCGACAAGTTGCCGAAATTTTCGGAAAGGCATTCATAGAAACATCTACCATGGCAACAGCTGTGAATGGCTTTAAAAAGTGCGGAATTTGGCCTTACGATCCGACAGTCTTCTCTGAAACCGACTTTGCTCTTTCGTTGGTGACTGATATTCCGCTCACTCAAGCACTGACTACAGCCACTACAAATGTAGCAGTCACAGCACCTGCTGAGTTAGAAACGCAGCAGTTTGACGTATTACCTGTGCTGGATATCAGTCAAGCTGCTATTACTAATGCAACTACATCTCGTGCTTCACTTCTATCTACCGGGGTTGAAACCGAGGCGATTTGCAAAGCCATTCATAATGTTCCTGTATCAGCTACTATTCACGAGACACCTACGGTGGCATCTGCTACCTCGTCGAGTCCTCAGCCTGGATGTTCCACATGGATTGAtgaaatagaaatagacaaaagaCCAACTACTCCACAACAGTCAACATTTTCTGTTGTTAGTCCACAGCAAATATTACCCCTTCCAGCAACTCGTAAGGCTTCACGCATTACTCGTAAACGAGGAAAAACGGCCATTATTACTGAATCACCGTTTAAAAAAGAACTCgaagaatcaataaaaaaaaaacaggtcgTGGAAGATAATAAACAAAGAAGAAATGAAATTAGACAACTAAAGTTGGAGAAGACGAAAAAGAAGGATAAAAAAGGAAGACGAAATAATACAgaagtaataaaaaagaaaaaaacaataaataatcgcAAATCATCTGATGACAAAAGTGATACAGATATTGAAAACACCCCTTGTTTATACTGCAGCGGTCTTTATTTAGATTCGAATGAAGGCTGGATTCAATGTTCTCTCTGTGGCATGTGGGCACATTGCTCTTGTGCTGGAGTGGATGACGATGAAGCAACATACACCTGCGAATTCTGCCAAGAAAAGTAG
- Protein Sequence
- MVKQYKRKTNRGEWSEESMKKAVEAVVEGKMGYMLAANTFSVPQTTLERKVKRARENSAPSSFTSSKVKVSLGPKQPVFTEEEENEFCSYILDMETRLYGLTTKDIKALAYNLAVKNNKVHPFNVQKQEAGKDWFQGFLNRHPELSIRKPESTSAARASGFNKEVVDQFFSFLGNIYDEHHFTPDRIYNCDETGISVVPKTKSKIVAKRGRKQVGALTSAERGVTITVEICFSASGQYIPPMMVFPRKKMDPQLMLNAAPGAWGVVSDSGWMTTEVFFGWFKQFVKFSGATVHRPVLLLLDGHSTHTKNIDLINEARANGVIILCFPPHTTHRLQVADVVYMRPLSNYYDRQITTWLRSNPGMVVTMRQVAEIFGKAFIETSTMATAVNGFKKCGIWPYDPTVFSETDFALSLVTDIPLTQALTTATTNVAVTAPAELETQQFDVLPVLDISQAAITNATTSRASLLSTGVETEAICKAIHNVPVSATIHETPTVASATSSSPQPGCSTWIDEIEIDKRPTTPQQSTFSVVSPQQILPLPATRKASRITRKRGKTAIITESPFKKELEESIKKKQVVEDNKQRRNEIRQLKLEKTKKKDKKGRRNNTEVIKKKKTINNRKSSDDKSDTDIENTPCLYCSGLYLDSNEGWIQCSLCGMWAHCSCAGVDDDEATYTCEFCQEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367654;
- 90% Identity
- iTF_01331371; iTF_00752878;
- 80% Identity
- -