Sgig054325.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012555.1:1737782-1760172[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-10 1.5e-07 33.1 0.0 1 39 188 227 188 231 0.89 2 4 1.1e-10 9.9e-08 33.7 0.3 2 39 243 280 242 283 0.92 3 4 1.3e-14 1.2e-11 46.2 0.2 2 45 298 341 297 341 0.96 4 4 1.7e-17 1.5e-14 55.5 0.1 1 44 348 392 348 393 0.96
Sequence Information
- Coding Sequence
- ATGCCGGGGCACGGCGCGACGGGCGTCAAGCGCGAGTCGCTGGCGGAAAGAAGTGACCCGAACGCACCCTTCACCAACGGATATCTTATGAATCAGCTTCCGTCGCTTGGTAACTGTCCGGTGAAAACAGAAAATGAGTGCATGCAAGACATCGACGACCGGTCCACCTTGCTGCTCGACCACCTCCAGGTGATGTTCGCTTGGAAAAATTCGCTTATTAACGACTTAAATCCGTTGCTGAGCAAGAGCGGTCTGGAGGAGCTGGCGCTGCCGGCGCCGGCGGGCCCCGCGGCCACGCCGGTGTGCGTGAAGCAGGAGGCGCGCGCCTCGCCGCCGCCCGCCACGCTCGAGAGCCTGCAGCCGGCGCCGCACACCACCAACGGGTCTACGCTGCTAGACCGACACTTCGCGATGCTGAGCGCGAACGAAGTGACAGATTCGTGTGACTTCATGCCGCTGCTGGCTGTGAAGGATGAGCCACTATCCGAAGGAGAGGCGCAGCAGACGAGCGGCGACGAGGCCAGCGAGGGCGGCGAGCGGCGCGGCAGTCCCAAGGGCTGGACGCCGCGCGACATGGAGCTCGCGCTCGACGCGCTGCGCACGCACAACATGAGCCTCACTAAGGCATCGGCGACGTACGGCATCCCATCGACGACGCTTTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCGAAGAAGGAGGGCGCCGCCAAGTCGTGGAGCGAGGCCGACCTCAAGGGCGCGCTGCAAGCGCTGCGGGCCGGCGCCATATCGGCCAACAAGGCGAGCAAGGCTTACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTCGCGCGGGCGCTCGCCGCCGTCCGCGCCGGCGCCAGCGTGCAGCTCGCCGCGCGGCACTACGGCATCCCCACCGGTACTCTATACGGACGCTGCAAGCGCGAGGGCATTGAGTTGTCTCGGTCCAACCCTACGCCGTGGTCGGAGGACGCCATGGGAGAGGCCTTAGAAGCTGTTAGAATTGGCCAAATGTCGATAAACCAGGCTGCTATCCACTACAACCTGCCCTATTCGTCACTGTACGGCCGGTTCAAGAGGTGCAAATATCAGGTTCAGGCGACGCAGCCAGATATGCAAAACAGCAGTCAGTTGGATCAGCCCATCGCATCAACGGTGGATGCTTGCTCAGCGCTGGACCCTCACCCACCTCTGGAGCCGACGTGCGCGGCGCCACAGTACTATGGCTGCGCAGGCGCTTGTTGCTGTTCAGTGCCCAGTTGA
- Protein Sequence
- MPGHGATGVKRESLAERSDPNAPFTNGYLMNQLPSLGNCPVKTENECMQDIDDRSTLLLDHLQVMFAWKNSLINDLNPLLSKSGLEELALPAPAGPAATPVCVKQEARASPPPATLESLQPAPHTTNGSTLLDRHFAMLSANEVTDSCDFMPLLAVKDEPLSEGEAQQTSGDEASEGGERRGSPKGWTPRDMELALDALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLKGALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAVRAGASVQLAARHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQVQATQPDMQNSSQLDQPIASTVDACSALDPHPPLEPTCAAPQYYGCAGACCCSVPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -