Basic Information

Insect: Schlechtendalia chinensis
Gene Symbol: PLAGL2
Assembly: GCA_019022885.1
Location: CM032346.1:5017252-5020086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.032 2.3 9.2 4.9 1 23 141 163 141 163 0.94

2 8 0.0057 0.41 11.6 5.2 1 23 274 296 274 296 0.93

3 8 1.7e-05 0.0012 19.6 2.7 1 23 302 324 302 324 0.97

4 8 9.3e-05 0.0067 17.2 7.9 1 23 330 352 330 352 0.97

5 8 0.058 4.2 8.4 0.1 2 23 360 383 359 383 0.95

6 8 0.00014 0.01 16.6 0.4 3 23 392 412 390 412 0.96

7 8 7.5e-05 0.0054 17.5 2.6 1 23 426 448 426 448 0.97

8 8 7e-05 0.0051 17.6 3.7 1 23 454 477 454 477 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.032	2.3	9.2	4.9	1	23	141	163	141	163	0.94
2	8	0.0057	0.41	11.6	5.2	1	23	274	296	274	296	0.93
3	8	1.7e-05	0.0012	19.6	2.7	1	23	302	324	302	324	0.97
4	8	9.3e-05	0.0067	17.2	7.9	1	23	330	352	330	352	0.97
5	8	0.058	4.2	8.4	0.1	2	23	360	383	359	383	0.95
6	8	0.00014	0.01	16.6	0.4	3	23	392	412	390	412	0.96
7	8	7.5e-05	0.0054	17.5	2.6	1	23	426	448	426	448	0.97
8	8	7e-05	0.0051	17.6	3.7	1	23	454	477	454	477	0.95

Sequence Information

Coding Sequence: ATGGGATCTAAAGATCACTATCAATGGCCAAAAGATGATCTTAATATCCAAATATCACCAGGACGTCAACTGCGATCACGTTTTTTTCTACTATGCCCTAACTGTGATCGACCAATTCATGGTAAGAGCGATCAACAAAATGTTTGCGAGTGTTTGTCTTCAACTCCAAATCCAGTATACAGTGATACTACCAGTTTAACAAATCAATCAAAAAAAAAAAATAGAAAACCTGTACAATTACCAGGGTCGTCATGCAAACGACAATTGTTTAACATAGGTTACGAACATTTGGAGTCTACGTCAATTTCACCTGATGTTCAGGAATCGATAGCAACCACCACTGGAAGTGGTGATTCAAATCTTTCTACACACGAGTCGCAAGAAAGATCGCCAGAAATGGGCCAGATACCGAGAAGTCAACACGTATGTCAGGTGTGTTCAAAGTCATTGACAAACCCTTGTAAATTGACTAAACATTCCTACTCTCACACTGGTGAAGAACCATTTGTATGTAAATTTGACATATGTTACGAACATTCTGAGTCTACGTCAATTTCACCTGATGCCCAGGAACCGATAGCAACCACCAGTGGAAGTGGTGATTCAAATCTTTCTACGCATGAGTTAATTTTACCTGATGCTCAGGAACTGATAGCAGCTAGTATTGAAAGTGGTGATTCAAATTTTTCTATATATGAGTCAATTTCACCTGATGCTCAGGAACCGTTAGCAGCCGCCATTGAAAGTGGTGATTCAAATCATTCTATAAACGAATCCGAAGAAAGAACGCCAGAAATTGGTCAGGTACTGAGAGGTCGACACATATGTCAGGTGTGTTCAAAGTCATTTACAAGTCCTTGTAAATTGACTCAACATTCTTACTCTCACACTGGTGAAAGACCATTTGTATGTAAACATTGTTCAAAAGCATTTTCTTCGAAATTCAAACTTGTTCGTCATGTATTAATACACTCTGATCAACGGCAATATTGTTGTACGATTTGTGATAGAACATTTCACAGAAAAGATCATTTGAAAAATCATGCCAAAGTACATAATCCTATAAAGCGAACTCTACAGTGCGACCGCATTGGTTGTTCAAAGGAATATAGTTCAATTCTGAGTTACCGTAAACACATAGCAGTCCATTCCGTAGAAGAAGGATTTCTTGACTGTAAAATTTGTAGTAAAATTTTTGAAAAAAAAGAAGAATTAATGTACCATTTAAAAATACATTCAGGCTCTAGAGTTGTAAAGACTCCGGCAGATAAGAAATACGAATGTCATGTATGCAATAGAAAATTTTATACCAGCAAAGATGTTCGTCGACATTTAGTAGTACATACTGGATTGCGAGATTTCTTATGTCAATTTTGTCCACAACGATTCGGTCGCAAAGATCACCTGACTCGGCACATTAAAAAAAGTCATAATATTAATGCAATGTCTAAGAAATACAAACCAAAAAAGCAGAATGAAGTTAAAAGTCAAACCGCTGAAGCCGTTTACCTTGAAACATATAATAGTACTGTAATCAAGATTGAAAACAAACCTTCAGAAACAGTTACCAGTGGTAGTCTGTTGATTAAACAAGAACATTCTCCTATGTCGGAATTACAGGTTTTCCATAGTTTCAATTTCGATGAAAACAACACTAACGCCGCAGAGTCATCCAGTGAACAGAATTTGTCCCATATGTACGAACACGAAGTCTATCCAGTAGACGATGAACTAAAAGTGTTTGAAACAACAGCATTGACTAACCAGTTAACAGAACACCATTATCAAGAATCCACCAGTTCCGAAATGTCGGGATTGTCTCAATTAATTGGCTTAATTCCATCATCTGGTATCACAAGTATTGATTCTAATTCTCCGATGTTGACCAACCAAGACGAACCAAATATTTTGAACCCACAGCAATCTCATCATTTAGTTTCACAAGATCAAACGCAAATGCAAGTTGGTGAATACTTTACGTCTTCCGAAATACTTTCTGCTTTATTGAGAGAAACTTCTGAAGCTAGTAACACGACAACACTGCCAGGCTTCAATCAAATTTTTAATCAACAACAATAG
Protein Sequence: MGSKDHYQWPKDDLNIQISPGRQLRSRFFLLCPNCDRPIHGKSDQQNVCECLSSTPNPVYSDTTSLTNQSKKKNRKPVQLPGSSCKRQLFNIGYEHLESTSISPDVQESIATTTGSGDSNLSTHESQERSPEMGQIPRSQHVCQVCSKSLTNPCKLTKHSYSHTGEEPFVCKFDICYEHSESTSISPDAQEPIATTSGSGDSNLSTHELILPDAQELIAASIESGDSNFSIYESISPDAQEPLAAAIESGDSNHSINESEERTPEIGQVLRGRHICQVCSKSFTSPCKLTQHSYSHTGERPFVCKHCSKAFSSKFKLVRHVLIHSDQRQYCCTICDRTFHRKDHLKNHAKVHNPIKRTLQCDRIGCSKEYSSILSYRKHIAVHSVEEGFLDCKICSKIFEKKEELMYHLKIHSGSRVVKTPADKKYECHVCNRKFYTSKDVRRHLVVHTGLRDFLCQFCPQRFGRKDHLTRHIKKSHNINAMSKKYKPKKQNEVKSQTAEAVYLETYNSTVIKIENKPSETVTSGSLLIKQEHSPMSELQVFHSFNFDENNTNAAESSSEQNLSHMYEHEVYPVDDELKVFETTALTNQLTEHHYQESTSSEMSGLSQLIGLIPSSGITSIDSNSPMLTNQDEPNILNPQQSHHLVSQDQTQMQVGEYFTSSEILSALLRETSEASNTTTLPGFNQIFNQQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -