Schi009720.1
Basic Information
- Insect
- Schlechtendalia chinensis
- Gene Symbol
- -
- Assembly
- GCA_019022885.1
- Location
- CM032346.1:6115007-6123747[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.7 2e+02 3.2 0.8 1 19 146 164 146 169 0.81 2 9 2.3e-05 0.0017 19.1 2.4 1 23 331 353 331 353 0.99 3 9 5.8 4.1e+02 2.2 3.4 1 23 381 404 381 404 0.76 4 9 3.7e-05 0.0027 18.5 0.2 1 20 410 429 410 430 0.97 5 9 2.5e-06 0.00018 22.2 0.8 1 23 439 461 439 461 0.99 6 9 4.1e-06 0.0003 21.5 0.6 1 23 467 490 467 490 0.96 7 9 0.01 0.75 10.8 9.0 1 23 496 518 496 518 0.96 8 9 0.0025 0.18 12.7 0.0 1 23 524 546 524 546 0.96 9 9 0.00017 0.012 16.4 3.2 1 23 552 574 552 574 0.98
Sequence Information
- Coding Sequence
- ATGAACATAATTATGCCACCTAGCGGAACAATTCGGTCCTGCAGCTTAAATGACTTTTGTAGATTGTGTGCAAATTTCAATGATAATATGATATCAATTTACTCAGATGAAGGAGTGGATCATATGTTGGAAAACAAGATAAAAACCCATCTTCCATTTATAAATATTTCCAAGAATGATTTATTACCAAAAAAAATCTGTTATCATTGCGCATCTACCGTTTTGGTTTGGAATGAGTTGTACGAGACAAGTAGTGGAGCAGATCATAAACTAAGAAGTATGTTTGAAAATATTCAATACAATCAAGGCGATAATTGCAAGGATATTCAAGACACTGAAAAATTAAGTCCAGTATTGAAAAGGTACATTGACATGACAGAATCGGATGAAATATTGAAAAATATTGCTACCAAAGAATGCTTACTTTCAGATTTTTATACATGTTCATTTTGTTCTGAAAATTTTGTGAAAATCAGGGATAAAGTTAAACACGATCGTGATGTTCATGGTATTCAATGTAGTATATTACCAATAAAATTTGTAAGTGATACTTTTATGGATAGTATAAAAATGAACATTAACCAAAGTAATACGAATACAAATCTATTAAACATAATTGATGTGAACGAAACAAATTCACCAAACATTACTGAAACATATGATGATAATGATAAGGTATTATGTACTATTTGTAATCATTTATTTCAAACTTCATTAGAGAAAATAGAACATGATCAGAAAATGCATGATGTACAATTAGAAGTTCGGCGAAGCAAGCGTGTTGTTGATAGTAAAAACTATGATGAAATATTTGATGAAAAATCTGATATTGATTTACAAACACAAAATAATCCACTAAACTTGGAGCAATTGAATAATAATTTTGTAGAATTAAAAGAAGAAGATGACAATATCGAACTGAAGGTAGATTTGGATGAGATAAAAGATGAACCAGATGAATCTAATGTCATTTCTGATAACGATAACGATTTTAAATGTTATTATTGCAATAAAAATTTTCCTACCAAGAGTTTAGCTATGAAACACGTCCGTTCACATAATATATGTGATGCCAAGAAATTAGGTCCAAAAATTGATACGTACGACAAATTTAAAATTATGATAGATGACAAATTGTATTATAAATGTAATCAGTGCAATTATGCAGTTGAGGGTAGACGATATAAGTTTGTATATCATATGAGAGTTCACACCGGGGAAAAACCATACACTTGTGAAATATGCAGCAAGCAGTTTCGTACAGCCGCGTTTTTAAGACGCCATATTGTGTGTTTTCATGAAAAAGTGCGTGGTTATCAGTGTGAAATTTGTGGTCGTTCGTTTTCTGAAAAACGTAATGTTGACGATCACAGACGCACGCATACAGGTGAAAGGCCATTTGTTTGTGAAACTTGTGGTAAAAGTTTTGCCCAAAGATCGTCGATGAAAATTCACTGGAAGCAAATGCATGAAAGTATAAAAACTCATAAATGTGAATTCTGTGAAAAAAGTTTTATTAGAAGATGTCATTTAGTTGCGCACTTAACTCATCACACTGGTGTACGCAATTATATTTGTGCCGTATGTGGCAAAGCGTTTTTGCGTAGTGGAACTCTTAAAGGTCATACCGCTGTCCACAGTTCAGAAAGACCTTTTCGATGTACTATATGCGGAGATACGTTTAAATTGAAAAAGCATTTGAAACAACATGGACGAGTTCATGGAAGTGTTCCTCTACCAGAATTTATGCTAGCCAATGATGGCTAG
- Protein Sequence
- MNIIMPPSGTIRSCSLNDFCRLCANFNDNMISIYSDEGVDHMLENKIKTHLPFINISKNDLLPKKICYHCASTVLVWNELYETSSGADHKLRSMFENIQYNQGDNCKDIQDTEKLSPVLKRYIDMTESDEILKNIATKECLLSDFYTCSFCSENFVKIRDKVKHDRDVHGIQCSILPIKFVSDTFMDSIKMNINQSNTNTNLLNIIDVNETNSPNITETYDDNDKVLCTICNHLFQTSLEKIEHDQKMHDVQLEVRRSKRVVDSKNYDEIFDEKSDIDLQTQNNPLNLEQLNNNFVELKEEDDNIELKVDLDEIKDEPDESNVISDNDNDFKCYYCNKNFPTKSLAMKHVRSHNICDAKKLGPKIDTYDKFKIMIDDKLYYKCNQCNYAVEGRRYKFVYHMRVHTGEKPYTCEICSKQFRTAAFLRRHIVCFHEKVRGYQCEICGRSFSEKRNVDDHRRTHTGERPFVCETCGKSFAQRSSMKIHWKQMHESIKTHKCEFCEKSFIRRCHLVAHLTHHTGVRNYICAVCGKAFLRSGTLKGHTAVHSSERPFRCTICGDTFKLKKHLKQHGRVHGSVPLPEFMLANDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -