Basic Information

Insect: Schlechtendalia chinensis
Gene Symbol: -
Assembly: GCA_019022885.1
Location: CM032343.1:10998271-11000393[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.55 39 5.4 0.5 1 16 56 71 56 73 0.90

2 15 0.01 0.72 10.8 4.9 1 23 91 113 91 113 0.99

3 15 2.3 1.7e+02 3.4 1.9 3 20 125 142 124 146 0.88

4 15 1.5e-06 0.00011 22.8 1.6 1 23 151 173 151 173 0.98

5 15 0.00037 0.027 15.3 1.9 1 21 179 199 179 200 0.96

6 15 5.4e-05 0.0039 18.0 0.4 1 23 207 229 207 229 0.98

7 15 6e-05 0.0043 17.8 3.1 1 23 250 272 250 272 0.99

8 15 0.032 2.3 9.2 6.9 1 23 278 300 278 300 0.97

9 15 3e-06 0.00022 21.9 4.6 1 23 306 328 306 328 0.99

10 15 0.0033 0.24 12.3 1.0 1 23 334 356 334 356 0.94

11 15 0.49 35 5.5 2.2 7 23 368 385 368 385 0.94

12 15 4.2e-05 0.003 18.3 1.6 1 23 391 413 391 413 0.97

13 15 0.008 0.58 11.1 3.8 1 23 419 441 419 441 0.98

14 15 0.24 17 6.5 0.9 1 23 445 468 445 468 0.91

15 15 0.00088 0.063 14.2 3.5 1 23 474 497 474 497 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.55	39	5.4	0.5	1	16	56	71	56	73	0.90
2	15	0.01	0.72	10.8	4.9	1	23	91	113	91	113	0.99
3	15	2.3	1.7e+02	3.4	1.9	3	20	125	142	124	146	0.88
4	15	1.5e-06	0.00011	22.8	1.6	1	23	151	173	151	173	0.98
5	15	0.00037	0.027	15.3	1.9	1	21	179	199	179	200	0.96
6	15	5.4e-05	0.0039	18.0	0.4	1	23	207	229	207	229	0.98
7	15	6e-05	0.0043	17.8	3.1	1	23	250	272	250	272	0.99
8	15	0.032	2.3	9.2	6.9	1	23	278	300	278	300	0.97
9	15	3e-06	0.00022	21.9	4.6	1	23	306	328	306	328	0.99
10	15	0.0033	0.24	12.3	1.0	1	23	334	356	334	356	0.94
11	15	0.49	35	5.5	2.2	7	23	368	385	368	385	0.94
12	15	4.2e-05	0.003	18.3	1.6	1	23	391	413	391	413	0.97
13	15	0.008	0.58	11.1	3.8	1	23	419	441	419	441	0.98
14	15	0.24	17	6.5	0.9	1	23	445	468	445	468	0.91
15	15	0.00088	0.063	14.2	3.5	1	23	474	497	474	497	0.95

Sequence Information

Coding Sequence: ATGTCCGCGGCGGATCGCTCGTCCACATCGTTGGACGGAGTCAATGACAGATTTTCATCGCCCGCGACTTACGAAAAAATGGCATTAGCCAAGGAAAACATTGAGCTTGTATCGGGTGAAGATGTCCAAGAGTCCGTAGTGAAGGCGGATATGTTCCATAACATTTTCAAGTGTCTGCGTTGTGAACAGACGTTTGAGAATGAACAGCAACTGCACACGTGCGACCCGTTGCCTTTAAACATTAATAAACAAAAGAAATTAAAACGAGTGTTTAAGTGTTCACTGTGTGATAAACATTATCATTTCCCATCGTTGGCCATGCTTCATATGAAACGTCATCAAAAATACATTGACAGCAAAATTGTGAACGCGTGTAGTGTTTGCGATTCGAAATTTCAAACCGTAAAAGCACTGAAAGACCACTGCAAACAGGAACACAATATCGTTCAATATCAATGTAATATTTGCGATAAGTTGTTCAAACAGTCTAGGAATTTACAGTATCATGTCATGAGCCATTCGGGAGACAAACCGTTCCAGTGCGAGTTGTGTTTGCACAAATTTACTCGAGCCGATCATTTGGCCAGACACCGAAAAGACAACTGCAATCAAATGGAATTTGAATGTGATTTATGCGGGAAAATTTACAATACCAAAAGAGGTGTCAGAACACATTTGAAAGTACACTACGACAGTCCAAAGCCAGGTACCATATGGGCATTGTATACGGAATCCGGGGAGAAATATTACGAGTGCACATTGTGTAGTAAAACATTTACACAATTTTCCAGATTCAAAGAACACGTACGAATGCATACTGGAGAAAAACCTTTCGAATGTAATATATGTAATAAAAAGTTTACTTGCCATTATAAACTGAAAATGCACCGTGACGTGCACACAAACGACAGACCATTCAAGTGTAGTTATTGCGAGCTAAGTTTCAAAAATCGCAGATACCTTAACAAGCACTTGCGTAAACATGACAAATGTAAACAATATCAATGTCAGATTTGTGATAAACAGTTCCAATGGTACAACAGTCTGAAATATCATATGGCTTTGCATACTGAAGAAAAACCATACGTGTGCATTGTACGCGACAAGTCATATTCACATCGCAATACTCTGACCGCTCATCAGCAACATATTCACGGTGATAAAATAATACACGAATGCTATGTTTGTAACACGAAATTTGCTCAGTTCAGCAGTCTGAATAATCACATGATCATTCATAAAAACGAAAAACCGTACAAGTGTCACCTGTGCCCAGCTCAGTTTTCCATGTGTATGTTGCTAAAAGCACATTTCAATATGCACGGCGGAGATTATCAATGCAGTTTTTGTGGCGGAACTTTTTTACAATTGTCCAGCCTGAGGTTTCATGAACGCCAGGTGCATGGTCAACCAGATGTCCACAACTGTGGTGTTTGCGGGAAAAAATTCAGTTCCATTATCCAGATGAAGAAACATTTAAAACACGAACACGGAATTTTGGTCACAAAAACGATCACCGTATATGGTGACAAGTTTGTGAACGATGACTGTGGTGATTGA
Protein Sequence: MSAADRSSTSLDGVNDRFSSPATYEKMALAKENIELVSGEDVQESVVKADMFHNIFKCLRCEQTFENEQQLHTCDPLPLNINKQKKLKRVFKCSLCDKHYHFPSLAMLHMKRHQKYIDSKIVNACSVCDSKFQTVKALKDHCKQEHNIVQYQCNICDKLFKQSRNLQYHVMSHSGDKPFQCELCLHKFTRADHLARHRKDNCNQMEFECDLCGKIYNTKRGVRTHLKVHYDSPKPGTIWALYTESGEKYYECTLCSKTFTQFSRFKEHVRMHTGEKPFECNICNKKFTCHYKLKMHRDVHTNDRPFKCSYCELSFKNRRYLNKHLRKHDKCKQYQCQICDKQFQWYNSLKYHMALHTEEKPYVCIVRDKSYSHRNTLTAHQQHIHGDKIIHECYVCNTKFAQFSSLNNHMIIHKNEKPYKCHLCPAQFSMCMLLKAHFNMHGGDYQCSFCGGTFLQLSSLRFHERQVHGQPDVHNCGVCGKKFSSIIQMKKHLKHEHGILVTKTITVYGDKFVNDDCGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -