Basic Information

Insect: Schlechtendalia chinensis
Gene Symbol: L_1
Assembly: GCA_019022885.1
Location: CM032339.1:20330942-20345753[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2.2 1.6e+02 3.5 7.0 1 23 34 56 34 56 0.97

2 21 8.9e-07 6.4e-05 23.6 5.6 1 23 62 84 62 84 0.99

3 21 1.1e-05 0.0008 20.1 0.9 1 23 90 112 90 113 0.96

4 21 0.00017 0.012 16.4 2.0 1 23 130 152 130 153 0.96

5 21 0.25 18 6.5 0.5 1 23 177 200 177 200 0.97

6 21 0.007 0.5 11.3 0.4 1 23 269 292 269 292 0.95

7 21 0.0093 0.67 10.9 1.0 2 23 443 464 442 464 0.94

8 21 0.0069 0.49 11.4 0.2 1 23 472 495 472 495 0.95

9 21 0.0098 0.7 10.9 0.2 1 23 500 523 500 523 0.94

10 21 0.05 3.6 8.7 0.2 2 23 575 596 574 596 0.96

11 21 0.088 6.4 7.9 1.2 1 23 600 623 600 623 0.97

12 21 3 2.2e+02 3.0 0.4 3 23 662 684 661 684 0.83

13 21 0.00096 0.069 14.0 2.7 2 23 698 719 697 719 0.97

14 21 0.0081 0.58 11.1 0.2 1 23 729 751 729 751 0.98

15 21 0.018 1.3 10.0 2.3 2 23 759 780 758 780 0.97

16 21 8.3e-05 0.006 17.4 0.6 2 23 848 870 848 870 0.97

17 21 0.43 31 5.7 3.3 1 23 874 896 874 896 0.97

18 21 0.07 5.1 8.2 0.1 2 23 908 929 907 929 0.95

19 21 0.017 1.2 10.1 0.1 1 23 937 960 937 960 0.96

20 21 3.1 2.3e+02 3.0 0.1 1 23 967 991 967 991 0.94

21 21 8.5 6.1e+02 1.6 3.4 1 22 1018 1039 1018 1041 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2.2	1.6e+02	3.5	7.0	1	23	34	56	34	56	0.97
2	21	8.9e-07	6.4e-05	23.6	5.6	1	23	62	84	62	84	0.99
3	21	1.1e-05	0.0008	20.1	0.9	1	23	90	112	90	113	0.96
4	21	0.00017	0.012	16.4	2.0	1	23	130	152	130	153	0.96
5	21	0.25	18	6.5	0.5	1	23	177	200	177	200	0.97
6	21	0.007	0.5	11.3	0.4	1	23	269	292	269	292	0.95
7	21	0.0093	0.67	10.9	1.0	2	23	443	464	442	464	0.94
8	21	0.0069	0.49	11.4	0.2	1	23	472	495	472	495	0.95
9	21	0.0098	0.7	10.9	0.2	1	23	500	523	500	523	0.94
10	21	0.05	3.6	8.7	0.2	2	23	575	596	574	596	0.96
11	21	0.088	6.4	7.9	1.2	1	23	600	623	600	623	0.97
12	21	3	2.2e+02	3.0	0.4	3	23	662	684	661	684	0.83
13	21	0.00096	0.069	14.0	2.7	2	23	698	719	697	719	0.97
14	21	0.0081	0.58	11.1	0.2	1	23	729	751	729	751	0.98
15	21	0.018	1.3	10.0	2.3	2	23	759	780	758	780	0.97
16	21	8.3e-05	0.006	17.4	0.6	2	23	848	870	848	870	0.97
17	21	0.43	31	5.7	3.3	1	23	874	896	874	896	0.97
18	21	0.07	5.1	8.2	0.1	2	23	908	929	907	929	0.95
19	21	0.017	1.2	10.1	0.1	1	23	937	960	937	960	0.96
20	21	3.1	2.3e+02	3.0	0.1	1	23	967	991	967	991	0.94
21	21	8.5	6.1e+02	1.6	3.4	1	22	1018	1039	1018	1041	0.87

Sequence Information

Coding Sequence: ATGACACACGCCGCCACCACTTTTGGCGGCGCGAATTTCTCTCAGAATGCAATTGCCATTAGTTTTTGGACAGCCTGCACTCATGGGGAATCGATGCCGTTCAAGTGTCAATTCTGTCGGAGACTGTTCAAACACAAGCGCAGCCGAGATAGGCACGTGAAATTACACACGGGCGACAAGAAATATAAGTGCACTCAATGCGACCATGCGTTTTCAAGGAGCGATCACTTGAAGATTCACATGAAGACGCACGACAATCAAAAACCGTTCCAGTGCACGGTGTGCAACAGGGGTTACAGCACGGCGGCCGCGCTCACGTCGCACATGCAAAACCATCACAAGAGGGCGGCGGAACGGGCCAACTCGCCGCAGATCTCCGGCCCGTCATACAAGTGTCTGCAGTGCACGCAGATATTCCGCAAGCCCGACGAGTTGCAGAATCACACCGCGACGCATCATCTCGGAGAACAACTGTCGTCGAATTCCCGAAGCTCGAAACGTTCGACGCCGCCGAAAACGCCGAGCCAATACATATGCATGTACTGCACCAAAGAGATGCCCAGCATGGACGCACTTCAACAACACTTCCAGACCAAACACTCGGCGATCGTCAACGGCAAGCCGGCCGAAGACGCGACGCCGTCGGCCGTGCCGTCCGCGACGTCCGCGGCGTCCGTGGCGTCCGCGGCGTCCGTGGCGGCTGCGGCGGCGGCGGCGGTGGCTGCGGCGGCGTTCCCGTGGCTCAGCTTCGCCGACTCGCCCGCCCTGTCGCCCGCCCTGTCGCCCGCCCTGTCGCCGCCGCCGCACGCGTGCCGGCTGTGCACCAGCCGGTTCCCGTCCGCGGCGTCGCTGCAGAAGCACCTGGCCACCGCCCATTACCTGAGCGCCGTCCTGAACGACGCGGACGACCGCAAAGACGCGTTCCCGCCGTTCGGCTGGCCGCCGGCGGCCGCGGCCAACGGGTACCGCCGCGGCGGCCGCTCGCCCGAGCAAACCGTGCAGACCGGGCCCACGGACCTGTCCGTGTCGTCGTGCAGGCCGGCCGGCGGCAAGCACCGACAGGGCAAGCACAAGTCCGCGGACGACCCGCGGAACCACGGGAACGTGGCCAAGAGGCCGCGCCCGTCGCCGGCCCACGCGAAACAAGAGCGCGGCCACGGCGCGTGCGAAAAGCAACACGCGCGGCACGCCGTGCGTCCGTCCGCGGCCGGCGTCCTGCTCGGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCCAACTGCCCTGTCCGCACTGTCGTCTGACGTTCGCGCACTTCGAGGACTACCAGCAGCACGTGATCGGGCACTTTCTGACCGCCGCCGCCGAGTACTCGTGCCGGGAGTGCGCCGCCCCGTTCGCCACGTCCGAACACGTGCAGAGGCATCTGATGGACGTGCACGCGCAGAACTTTTACCGGTGCATGGTGTGCAAGGAGCTGTTCCCGACCAGGGCGGCGCTGAAGGCGCACTTCGGCACCAGCCACGGCAGCGAGCGCCGGATGTTCCGGTGCAACAACTGCGCGGGCGCGTCCAGGCCGCTGTTCCGCACCGAGATCGAGTTCATCGACCATCTGCGGAACGTGCATTATTCCGCCAGGTCGCCGCCGCCGCCGCCGGCCGCCGCCAACCTGATGCTCAGGTGCCTGGTGTGCCACGCCACGTTCGGCGCGCAGTCCGACATGGAACAACATTTGGCCAGCCACTCCAAACAGTTCCAGTGCCAGTTCTGTCCGGAGGCGTTCCACATCGAGTTCCTGTTGGACAGGCACGTGCAAACGCGCCACAACCCCACGATTCTGAGTCATCTGAACCGGAACCGTAAGGAGTCGCCGGCCGACGTCGCGTGCGCTTCGCCCGCGTACGCGTCCCGTCCGGCGGAGAACGGCGCCGCGAACGCGTGCGACATGTGCGAGAAAAACGATTTCCGGAACGAACTGGACCTGACGGCCCACAAGAAGACGATGCACCAGGTGAAGCCGACGAACCTGTCGACGAAAGTCAGCTTGCGTTGCGCGTATTGCGACGAAAACTGCAAATCCAGAACCGAATTGGAGAATCACACGAAGACGCACTCGCAACACGGTCCGAACGTCGGCAAACACAAGTGTAATATCTGCGACGAAATCTATCAGTCTGCGATCGGCTTGGCCGAACACAAGCTCACCCACTGCAAGGTGGCGACGAGTACCGTGTGCAGCCATTGCAAGACGATCGTGGACAACGAGGATCAGTTCTACAAGCACCTGCGGAAGCACTGCACCGGCGGCGGCAGTCCGGCTAACGCGAACGGCGGTCAAGTGACGTTCCCCACCTCGTGCGTCATATGCCGGCAGACGCTGGTCTCGGACGTCGAAGTCAGAGTGCACGTGCACTATCACCTGTCGCGGGTCCAGGGACCGCCGCCCGCGGTGTGCGGCCGCTGCGACCCGTCCGGGAGCGCCGCGGCCGCGACCGAACGGTGTCCGGACTGCGGCGCGACGTTCGAGACGTTCGGCACGCTGCAACACCATCTGACCACCGTGCACAGAAAGCCGTTCCACTGTTTCAAGTGCAAGATCGGATTCGAGTCGCAACACGATGCCACGCTCCATCTCGGCACGCACCTGGCCACGCTGAACGGTTCCGCGGACGGTATCGAGTGCGGCCTGTGCCCGTGCGTACTGTCCACGGCCAACGGTCTGCAGACGCACCTGATCGAGCACACGTTCGCCGGCTGCAAAGCGTTCACGTGCTACTTGTGCTCGGCGATATTCACCGCGGCCACGGGTCTGCAGGCGCACATGACCGTCGACCATTCGGCCGAGACGCCGCCGTACGACTGTCCCAGGCCCGGGTGCCAGGCCAAGTACTTCTTCACCGCCGAACTCGACCGGCACACGCTGGAACACCAAGGACAGGACGTGCTCGCCAATATGAATTTCTACAAGTACCAAAACAAACTGATGTCCATGTGCGAAAATATGTCGTTCAAATGCGCGGAGTGCTACCAGAGCTTCTTGACGCAGGCCGACTTACAGTGTCACGTGTACGACCATCACCAACAGCCGAGAGACGCGACAAACTCGGAATTCAAACAGCAGCACGACGTGAAACGGGAAGAGAAAATGGCGTGCGAGATGAACGGCACCGCGAGAAAAGGTGACCGCGACGTAGGCGAAGCCGAGAAATCGATTGTCAAGGTGGAGAAACACGACGAGATAAACGTGAAAAAAGAACGGCACGACGGAAAGGATGACGGCGACCGCGACGAGGAGGAGGATGAGGAGGAGGAGGAGGACGACGACGACGAAGAATTGATCGACGTGGGCGTGAACAACCATCGCGACGACGAGAAGTCCCGCGCGGAAAACTGA
Protein Sequence: MTHAATTFGGANFSQNAIAISFWTACTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPSQYICMYCTKEMPSMDALQQHFQTKHSAIVNGKPAEDATPSAVPSATSAASVASAASVAAAAAAAVAAAAFPWLSFADSPALSPALSPALSPPPHACRLCTSRFPSAASLQKHLATAHYLSAVLNDADDRKDAFPPFGWPPAAAANGYRRGGRSPEQTVQTGPTDLSVSSCRPAGGKHRQGKHKSADDPRNHGNVAKRPRPSPAHAKQERGHGACEKQHARHAVRPSAAGVLLGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQLPCPHCRLTFAHFEDYQQHVIGHFLTAAAEYSCRECAAPFATSEHVQRHLMDVHAQNFYRCMVCKELFPTRAALKAHFGTSHGSERRMFRCNNCAGASRPLFRTEIEFIDHLRNVHYSARSPPPPPAAANLMLRCLVCHATFGAQSDMEQHLASHSKQFQCQFCPEAFHIEFLLDRHVQTRHNPTILSHLNRNRKESPADVACASPAYASRPAENGAANACDMCEKNDFRNELDLTAHKKTMHQVKPTNLSTKVSLRCAYCDENCKSRTELENHTKTHSQHGPNVGKHKCNICDEIYQSAIGLAEHKLTHCKVATSTVCSHCKTIVDNEDQFYKHLRKHCTGGGSPANANGGQVTFPTSCVICRQTLVSDVEVRVHVHYHLSRVQGPPPAVCGRCDPSGSAAAATERCPDCGATFETFGTLQHHLTTVHRKPFHCFKCKIGFESQHDATLHLGTHLATLNGSADGIECGLCPCVLSTANGLQTHLIEHTFAGCKAFTCYLCSAIFTAATGLQAHMTVDHSAETPPYDCPRPGCQAKYFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSMCENMSFKCAECYQSFLTQADLQCHVYDHHQQPRDATNSEFKQQHDVKREEKMACEMNGTARKGDRDVGEAEKSIVKVEKHDEINVKKERHDGKDDGDRDEEEDEEEEEDDDDEELIDVGVNNHRDDEKSRAEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -