Schi013546.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schlechtendalia chinensis
Gene Symbol
-
Assembly
GCA_019022885.1
Location
CM032339.1:36801761-36804913[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.083 6 8.0 1.1 1 21 41 61 41 62 0.95
2 26 4.8e-06 0.00034 21.3 1.4 1 23 93 115 93 115 0.99
3 26 9.7e-05 0.007 17.2 1.0 1 23 121 143 121 143 0.98
4 26 0.00011 0.0079 17.0 2.6 1 23 149 171 149 171 0.99
5 26 4.6e-06 0.00033 21.4 0.8 1 23 177 199 177 199 0.98
6 26 4.3e-05 0.0031 18.3 2.2 1 23 205 227 205 227 0.99
7 26 2.1e-06 0.00015 22.4 0.5 1 23 233 255 233 255 0.98
8 26 2.9e-06 0.00021 22.0 0.9 1 23 261 283 261 283 0.98
9 26 1.3e-05 0.00097 19.9 0.2 1 23 289 311 289 311 0.97
10 26 3.1 2.2e+02 3.0 6.2 3 23 370 392 368 392 0.79
11 26 2.3e-06 0.00017 22.3 0.7 1 23 398 420 398 420 0.99
12 26 2.6e-05 0.0019 19.0 0.1 1 23 426 448 426 448 0.97
13 26 6.8e-06 0.00049 20.8 0.5 1 23 454 476 454 476 0.98
14 26 0.00045 0.032 15.1 2.0 1 23 482 504 482 504 0.96
15 26 0.00084 0.06 14.2 0.1 1 23 510 532 510 532 0.97
16 26 0.019 1.4 9.9 0.1 3 23 551 571 549 571 0.96
17 26 2e-05 0.0014 19.3 2.9 1 23 579 601 579 601 0.99
18 26 4.5e-06 0.00033 21.4 1.0 1 23 607 629 607 629 0.99
19 26 3.6e-06 0.00026 21.7 0.1 1 23 635 657 635 657 0.99
20 26 5.7e-05 0.0041 17.9 0.4 1 23 722 745 722 745 0.98
21 26 1.5e-05 0.001 19.8 0.7 2 23 777 798 776 798 0.97
22 26 5.8e-06 0.00042 21.0 0.3 1 23 804 826 804 826 0.98
23 26 4.5e-05 0.0033 18.2 0.6 1 23 832 854 832 854 0.98
24 26 4.8e-05 0.0034 18.1 0.1 1 23 860 883 860 883 0.98
25 26 4.4e-05 0.0031 18.3 2.0 1 23 889 911 889 911 0.98
26 26 0.0013 0.097 13.6 0.9 1 23 917 939 917 940 0.94

Sequence Information

Coding Sequence
ATGACAGACATCTTTGTTGAAACGTCACCGGTAGATGATGAATCGTTCCAAAATCCGAGCGAATCCATGCACTTCGAAATGGTTGTTGAAGGCGAAGGAGAAACCGTCCTATCAAATGAATACATCTGCTATAAATGTAAGACTGTATACTACAAACGTTCACAAATAGTAAGACATTTACAGTTCTCTTATTGCAAGAGTAAACGTTCAGTTACTGAAAAAGTAGTTCCTATTATTAAAAAGCTACCTGGTTTATCAACAGACAAATATAAGTCTTACCAATGTGAAACGTGTTCAGAATCGTTCGCGAACAAGGCAAAATTGACTCGGCATAGTCGGACGCACGGTGGCGAAAAACCGTTTTATTGTAACATTTGCAACAGAGGATACTCTAGTTCTAACGGTCTAAAGAGTCACGGGAAGACGCATTCAGGCGAGAAGCCTTATAAATGCGACACTTGTCCCAAGGCGTTCGCTCATTCGCATATTTTAATAAACCATTTGAGAACGCATTCCGGGGAGAAACCGTTCGAGTGTGAGTTTTGCCAAAAACGTTTTGCCACGTCCGGAACGCTGGTGGCGCACAGACGCACGCACACGGGCGAACAGCCGTACAAATGCGACGCGTGCCAAAAGACGTTTTCCCTGTCCAGCAGCTTGAGCTCGCACAAACGAACGCACACCGGCGACCGGCCTCACGTGTGTGACGTCTGCCCGAAGGCGTTTGCCAAGAGCGGCGATCTGGAGAGGCACAAACGGACGCACACCGGCGCGAAACCGTTCCGTTGCGACAGTTGCGACAAGTCGTTCACCCAGTCGTCCGGCCTGATCGTCCACAAACGTCTGCACACGGGCGAAAGACCGTTCGCGTGCGACGCGTGCCCGCGGTCGTTCACCAATTCGGCTAGTCTGATTGCGCACAAGCGGACGCACACGGGGGAAACGCCCCGCATGCCCGCGAACTTTCCGGACGTCCGACGCGCGCCGGACGGTCGAAACGGCGCGCTCTCGACGCCGTCGGCCGGCGATTTCGGTTGCGGCCGGTCGAATCGGTTGCAGAGCGAAACGGACGCCGCGCCGTCGACCGGCGGCGGCCGGTGGCTGGACTGTGACGTGTGCCACAAGACGTTCCCGTACGCGTCCAGACACAAGCTGATCGAACACCGGCGCACGCACACGCGCGAAAAACCGTTCAAGTGTCCGCGGTGCGACAAATCGTTCTCGTTGTCCAGCACGCTGGTCGTGCACGGTAGAACGCACACGGGCGAACGGCCGTACGCGTGCGACGCGTGCCCGAAGGCGTTCGCCCAGAAGTCCAAGCTGAACGTGCACAAGCGGATTCACACGGGCGCGAGGCCGTTCCGGTGCGACCGGTGCGGAAAGGCGTACGCGCACCCGTCCAATCTGGCCGACCACAAGCGTGCTCACGCGCCAGACAGACCGCACCAGTGCGACGTGTGCCACAAGTCGTTTGCGCTGGCCAACGGCCTGCGGAAGCACAGAGCGCTGCACGCCGGACACAGACCGTACGCGTGCGGGATTTGCCGGAAGCCGTTCGCCAAGAAGGCCGGCCTGGACCGTCACCGGGGCACGCACGACGGCGTGCCCGAGTGGACGAGACCGTTCGCCGGCGGCGACAAGCCGTTCGGGTGTCACGCGTGTCCGCGGTCGTTCGCCAGCGCGAGCGGCGTGGCCAGACACGCGGCCAAACACGGCGCGCCGCCGCAGGACCGGTACCGGTGCGACGCGTGCCACAAGACGTTCGCCGGCCGGTCGACGTTGCGCAGACACGAACGGACGCACACCGGCGAGCGGCCGTTCCGGTGCGAACGCTGTCCGAAGGCGTTCGCCTACTCGTCGACGCTGGTCACGCACAGACGCACGCACACGGGCGAGAAACCGTACCGGTGCGACGTGTGCCCGAAGGCGTACGCGCAATCGTCCGGTTTGATTGTGCACAAGCGGACCCATTGGAACGACGAACGGCCGGTTCCGGTCGGGCCGCCGGCTGACGTCGGGCCGCCGGCGGACGTCGGGCCGCCGGCGGACGTCGGGCCGCCGTCGGACGTCGGGCCGCCGGCGGACGTCGGGCCGCCGGCGGACGGCGGGCCGCCGGCGCCGCGGACGGTCGCGCGCGTGACCGCCGGCTACGGGCCGCGGAAGTTCAAGTGCGCCAAGTGCAAGGAAACGTTCGACGGCAGCTCGCCGCTGCTGAAGCACATCAGGACGGTGCACGGCGCCGCGGCCGGGACGCGCGCGCCGTCCACGGCAGCGGACGGCGACGCGGCGCCGCGACAAAGGAAACGCCGCGGCGTACGGCAACGGCTGGAGTGCGACGTCTGCGGGCGGCCGTTCCACGACGCGTACAAGCTGCGGGTGCACCGGCGCACGCACACCATGGAACGGCCGTACGTGTGCGACGTTTGCGGCAGGCCGTTCATCGACGCGTGCAACCTCAGGGAACACCGGAAGGTGCACGCCGGCGAGAAGCCGTTCGAGTGCGACATCTGCCCGAAGACGTTCCTGCAGCTGGGCACGTTGACCACGCACCGGCGCACGCACACCGGCGAGAAGCCGTACCGGTGCGACGTGTGCGGCACGCCGTTCGCGCTGTTGAGCAGCATGAAGACGCACATACGGCGGGCGCACACCGGCGAGAAGCCGCACAAGTGCGACCTCTGCCCGAAGGCGTTCGTCAAGCGCAACGACATGGCCCGGCACCGGAGAACGCACACCGGGGAGCGGCCGTTCGCGTGCGACGCGTGCCCGCGCTCCTTCACCCAGTCGTACGTGCTGGTCGTGCACAAGAGGAACCATCACGCGGATACGCCGCCGTCCGTCGGATGCGACGTGTGCCTCGGGCCGTTCGCGCGTGCCGGCGAACACCAAGTGCGCTGCGACGCGTGCCAGAGGTCCTTCGGCCGGTCGCCGGGCGGCCCCCTGGCCGTCCACACGCCCGCTGCTGGCGGCGGTCCGCTCGAACAAACCGTTGGACCGCAGCGGTCCGTCGACGCGACAAAGTGGCCGCGGTACGCCGGCCACGGGCCGTGCGAATGCGGCGCGTGCCAGTTGTCTGTTGGCCAGCCGTCCTCCGCGTACGTGCACTTCGACCATCGGCCTACCGCGCCGGACAGAAACGTGTATTGCCTATGA
Protein Sequence
MTDIFVETSPVDDESFQNPSESMHFEMVVEGEGETVLSNEYICYKCKTVYYKRSQIVRHLQFSYCKSKRSVTEKVVPIIKKLPGLSTDKYKSYQCETCSESFANKAKLTRHSRTHGGEKPFYCNICNRGYSSSNGLKSHGKTHSGEKPYKCDTCPKAFAHSHILINHLRTHSGEKPFECEFCQKRFATSGTLVAHRRTHTGEQPYKCDACQKTFSLSSSLSSHKRTHTGDRPHVCDVCPKAFAKSGDLERHKRTHTGAKPFRCDSCDKSFTQSSGLIVHKRLHTGERPFACDACPRSFTNSASLIAHKRTHTGETPRMPANFPDVRRAPDGRNGALSTPSAGDFGCGRSNRLQSETDAAPSTGGGRWLDCDVCHKTFPYASRHKLIEHRRTHTREKPFKCPRCDKSFSLSSTLVVHGRTHTGERPYACDACPKAFAQKSKLNVHKRIHTGARPFRCDRCGKAYAHPSNLADHKRAHAPDRPHQCDVCHKSFALANGLRKHRALHAGHRPYACGICRKPFAKKAGLDRHRGTHDGVPEWTRPFAGGDKPFGCHACPRSFASASGVARHAAKHGAPPQDRYRCDACHKTFAGRSTLRRHERTHTGERPFRCERCPKAFAYSSTLVTHRRTHTGEKPYRCDVCPKAYAQSSGLIVHKRTHWNDERPVPVGPPADVGPPADVGPPADVGPPSDVGPPADVGPPADGGPPAPRTVARVTAGYGPRKFKCAKCKETFDGSSPLLKHIRTVHGAAAGTRAPSTAADGDAAPRQRKRRGVRQRLECDVCGRPFHDAYKLRVHRRTHTMERPYVCDVCGRPFIDACNLREHRKVHAGEKPFECDICPKTFLQLGTLTTHRRTHTGEKPYRCDVCGTPFALLSSMKTHIRRAHTGEKPHKCDLCPKAFVKRNDMARHRRTHTGERPFACDACPRSFTQSYVLVVHKRNHHADTPPSVGCDVCLGPFARAGEHQVRCDACQRSFGRSPGGPLAVHTPAAGGGPLEQTVGPQRSVDATKWPRYAGHGPCECGACQLSVGQPSSAYVHFDHRPTAPDRNVYCL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-