Schi009197.1
Basic Information
- Insect
- Schlechtendalia chinensis
- Gene Symbol
- -
- Assembly
- GCA_019022885.1
- Location
- CM032346.1:144622-153138[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6 5.8e+03 -2.5 0.0 2 23 94 114 93 116 0.74 2 3 3.2e-12 7e-09 35.7 0.0 4 40 723 759 722 763 0.89 3 3 2.8e-06 0.006 16.7 0.0 5 44 777 815 774 816 0.91
Sequence Information
- Coding Sequence
- ATGAAGGTGCCCCTTGGTAAAGTTAAGACACCTGGACTACAAGACATGTTTGACGGGCTCGTTAAACAATTCGCTGAGTTCCATAAAGCCCATAGCGAGACTTCTAAGGAGTGGAAGTCTGCAATTGCCACTGAGCGGAGCAAAAACGAGTCACTCAGGGCCACGAAAAGCGTCAATGCTCAGATTGAGCTGTCTCAATCGAAGGTCTTGGAGGCGATCTCTAACTTTAGGGATTGGCCAGGGAGGGGCTCTCAGCCTGGCCCAGCGGTACTCCACAGGAACGACGAGCTACTGGGCGCCATTGATGAGATCAAAGGACAACTAAGCTCACAACAAGGTGCAATTGAAGCTATTGTCGCTGCCTTGCCATCCAAGAAGCGGCAGCGCCAGCCGAAACCTTCGGCCTTGCCTGCCCCATCGAGGGTCCCGCAGGCAGTAGCTTCTGAAGAACTACCCCGGGAACCATCAGAACCATCGGACAGCTGGGCCACTGTTGTGCGAAGGAAAAACAGGAGGACTAGAACGGCGTTCCAGCCTCCTGGAATAAGCTTTGAACAAGTGGGACGAAAGGCCAAGGCGTCCCAGGCCTCGAGTAACGTGCTTAGGAAAACGAAAACAGAGGCTATAACAATCAGCCAGCCACGGGAGGGCACCACATACATGGAAGTCATGAAGAAGGTTCTCGCCGACGTCAGTCTCCAGAACCTTGGGGTCGAGATTGGGAGAACCCGGCGAACTAGGGCTGGCGCTATCCTTATCGAAGTGGGTGACAAAGAGGCGGCCGATCTCCTGGCCGGCCACCTCAAAGATTCAATTGGCGATCAGGCTAAAGTATCAAGGCCGCAGAGGTCGGCCAAGCTCCTCGTTGTCGGAGTGGCCGATTGGTTGGAGGAAGACCGGGTAGCAGAGGATATAAGATCGGCGGACCCAGAACTCGCCGAAGCCAAAATCTACATTCGAGACAACTCCGGAGGAGGTAGAGTGGCCTCTGTTGAAACATCGGTGGACGTCGCTGCGAAACTGGTGGAGGCCGGGCACATTAAAATAGGGCTGGGAAAATGCAGGGTGAAACTGTTAGGCGGCGTGAACCAGAGGTGCTTCCGCTGCCATGAACAGGGACACTTTGCTGCTGGATGCTCAGCAGTCGAACCCGCCATACGATGTTACCGCTGTGGTCGGGTGGGCCACGTCGCCAAAGACTGCCTGGGCAAACCTGGGGTACCGCCCGCCTGCTATGCTACCTCTAACCAGGCGGCCAGTGAGGGCTCTTTTGCTGGTGCAACGAGCACGCCTAGCCTCACGGGGTCAACGGCTAAGGCTGCTATTCTCTTGCACGGCTCTCAGGTGACAGTTGCTAACGTCACTAGGGACCCCGAGTTCGTATCAGCACGCCTTAATGGCGTGCAGGTATTCAGCTGCTATGCGTCTCCCAACCAGTCTCTTGAGAGGTTTAACAACTTTTTACAGAGGCTGGAGGATTGCATCAGGCTGACGGCAACGGGTGTCCCCATCCTAGTCGCTGGCGACTTTAACGCCAGATCGGCAGCCTGGGGTGACCGTGTGAGCAACAGCAGAGGTGAAGAGCTGAGCGCCCTGCTAGAGACGCTAGAGCTGGTGGTCTGCAACACGGGTACAACTCCTACGTTCCACAGGGGTGCTGGGTCGGTTGTGGACATCACGGCGACGTCTGCGACCCTCGCTCGACGGGTTAGCTCGTGGAGAGTGCTGAATGAAGAGTTCAATAATAGTGACCACCACTATATCAGGTTCAACCTTAGCCCTACTCTTCGCGGAGAACCTTCGTCAGCGCCGCGCCATCACATCCACACTGGCTGGGACACGTCTAGGGCACTGGACGTCGACGCGATCGGCACTGGCCTCCTGCTGGCACAATGGAGAACTCAGGGGCTATTCCTAGAGGTGCGCGACGCCAACTCCGCCGCAAACTCGTTCGAGGACATGGTGTCCGCGGCTTGTGACTTCGCTCTCCCTAGAAGACGTCAGCCAAATACTGGCAAACTTCCGGTCCATTGGTGGAACCCGGAGATTGCGGCGCTCCGGTTGACGTGCATAAGAAGTGTTTTATCTACAACGTTTAGCTGTTTCCACAGAGTTTTTCGTCGTAGATTCCAGATTTTTCTTCAATTGACTTGGTCGAAGATGTCGAATATGGAATCCGCAATTGCCGCCGTCACTGGGGGGAAGATGTCGATGGACCAGGCGGTGAAGAAATTTAACGTGCCCAAAACCACTCTCTGGGAGAAGCTGCAATCCAAAGAGGACACCGGGTTTTACGTACCGAGGAAGTACGGTCGCAATCCGCGTATCATACAGATGGCCATTGATATTGTCGACTCCGGGAATAGCGTGTCAAGTGCGGCGAGACTGATGAACGTGCCTCGTACCACGCTAAGAGCGTTGGCTCGGAGGAAAGAGCAATTGATGAAGGCCGAAATACCGCCTCCCGAACCCGCCGCCGAAGACGAGGAACAAAGATTGTTGGACACCGTCATTGAGCTCATCGAAAAAGGCGTCGAACGCAAAGCCGCGTACAAACAGGCCGGTGTGACCAAAAAGTGGATCAAGGCCGCCTTGTCCTCGAGAATGAAGGAGGCCGACGTACCGACTCCCGAACACGCCGCCGAGGACGAGGAACAGAGATTGTTATACACCGTCATTGAGCTCATCGAAAAAGGCGTCGAACGCAAAGCCGCGTACAAACAGGCCGGTGTGACCAAAAAGTGGATCAAGGCCGCCTTGTCCTCGAGAATGAAGGAGGCCGACGTACCGACTCCCGAACACGCCGCCGAGAACGAGGAACAGAGATTGTTGGCCACCGTCATTGAGCTCATCGAAAAAGGCGTCGAACGCAAAGCCGCGTACAAACAGGCCGGTGTAACCAAAAAGTGGATCAAGGCCGCCTTGTCCTGTACGATTCGTCACGTCGTTCAAACGCGTCCGCTAGTTTAA
- Protein Sequence
- MKVPLGKVKTPGLQDMFDGLVKQFAEFHKAHSETSKEWKSAIATERSKNESLRATKSVNAQIELSQSKVLEAISNFRDWPGRGSQPGPAVLHRNDELLGAIDEIKGQLSSQQGAIEAIVAALPSKKRQRQPKPSALPAPSRVPQAVASEELPREPSEPSDSWATVVRRKNRRTRTAFQPPGISFEQVGRKAKASQASSNVLRKTKTEAITISQPREGTTYMEVMKKVLADVSLQNLGVEIGRTRRTRAGAILIEVGDKEAADLLAGHLKDSIGDQAKVSRPQRSAKLLVVGVADWLEEDRVAEDIRSADPELAEAKIYIRDNSGGGRVASVETSVDVAAKLVEAGHIKIGLGKCRVKLLGGVNQRCFRCHEQGHFAAGCSAVEPAIRCYRCGRVGHVAKDCLGKPGVPPACYATSNQAASEGSFAGATSTPSLTGSTAKAAILLHGSQVTVANVTRDPEFVSARLNGVQVFSCYASPNQSLERFNNFLQRLEDCIRLTATGVPILVAGDFNARSAAWGDRVSNSRGEELSALLETLELVVCNTGTTPTFHRGAGSVVDITATSATLARRVSSWRVLNEEFNNSDHHYIRFNLSPTLRGEPSSAPRHHIHTGWDTSRALDVDAIGTGLLLAQWRTQGLFLEVRDANSAANSFEDMVSAACDFALPRRRQPNTGKLPVHWWNPEIAALRLTCIRSVLSTTFSCFHRVFRRRFQIFLQLTWSKMSNMESAIAAVTGGKMSMDQAVKKFNVPKTTLWEKLQSKEDTGFYVPRKYGRNPRIIQMAIDIVDSGNSVSSAARLMNVPRTTLRALARRKEQLMKAEIPPPEPAAEDEEQRLLDTVIELIEKGVERKAAYKQAGVTKKWIKAALSSRMKEADVPTPEHAAEDEEQRLLYTVIELIEKGVERKAAYKQAGVTKKWIKAALSSRMKEADVPTPEHAAENEEQRLLATVIELIEKGVERKAAYKQAGVTKKWIKAALSCTIRHVVQTRPLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -