Spec013638.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638208.1:2589545-2592375[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.25 17 6.2 0.5 1 23 202 225 202 225 0.94 2 13 0.027 1.9 9.3 3.4 1 23 234 257 234 257 0.89 3 13 0.16 11 6.9 3.5 1 23 266 289 266 289 0.97 4 13 0.12 8.5 7.2 1.1 1 23 591 614 591 614 0.95 5 13 0.12 8.3 7.2 2.7 1 23 623 645 623 645 0.97 6 13 2.1 1.4e+02 3.4 2.9 2 23 655 677 654 677 0.90 7 13 0.0061 0.42 11.3 2.2 1 23 684 707 684 707 0.97 8 13 1.8e-05 0.0012 19.3 1.6 1 23 717 740 717 740 0.95 9 13 0.0057 0.39 11.4 0.1 1 23 747 770 747 770 0.96 10 13 2.7 1.8e+02 3.0 0.7 2 23 778 799 777 799 0.93 11 13 0.21 15 6.5 3.0 1 23 806 829 806 829 0.97 12 13 0.0001 0.0068 16.9 1.2 1 23 837 860 837 860 0.97 13 13 0.00077 0.052 14.2 0.3 1 23 902 925 902 925 0.98
Sequence Information
- Coding Sequence
- ATGTTCTCCCAATCCTCCAACGTTTACGCCGAATTAACGAGCGCTCTAACAACGCACGAAAACTATCAACAATTCGCCAATTACTACGTTGCTCCAAGCGAAGATTTTTCAATTGAGTATCAGTACAGTGACCAAGACAGCACCAGTTACTTTGGAGCCGCAATGCAAGATGAAGAATTGTCCTGGGTTAGCAACGGTCGTGAAAGACTTCAGCCATTATCGATTTCAACCGTGAACGATGCAAAATACGGTCCAATTGGAAGCCAAATCAACAATAGTTCAACTGAATACACTGAACTCACCAATCTCGCTTCTTTAACTCCCGAAATTAATGCAAGTGAAGACAACTTTCAAATGTGGAGCGGGCCGAATGACTACGCCTCGTTTGTGCGGGAAATCGTTAATTCTGGCTCAGTAAGTAGTGATAACAACATTCCAGAAGTTCAGATTACTTACGAAGTTCCCAAAACTCAAAATCAAACTGTTCAGTATGAAGTTAGCAGCAACACTAATCCCAACGAAGTCGTCACAACTAATGTTACCACTACCAACATAACCACCAGTAAAGTTGGGGCTCCTGTAAAAAATGCCAGCAATGGTCTCTTCCCATGTTCTAGTTGCCCTTATGTagctaaaaagaaattatatcTCCAACTGCACATTACTAATAAACACACAGAACCGGAAAACGTTACGTGGTATCTGTGCGATAAATGCACTTACAAATGTAAGAGAAAAGACAAGTTGAAGGTGCATGGAATTAACATGCATACACCCCCGGACGAGATAATATGGTTTGAATGCGTAATGTGCGAATATAAGCACAAAAACAAGGACGAAATTAATCGACACATGaagaaaaaacacaattacGTCCCTCCCAAAGAGCAGAGGATCTCCAAAACCCCCGCGAAAAACTCACGGAAGACAACTACTAAACCTCGACAAACCCCTGGTCTCGCCGTTCAATTTAGTAATTCCGCCGCCATTTCGCCTAACTTCACAGAGCAGCTCGAGGATATTTCCTCGATTTTGGTCACTCAGGGCCCCCAATTTGCGGATTCCGTAACTGAGCAGTGTTTCGAGGTTTCTACTATATTTGGGGACCAAATCGTCGAATCTGGAAACTTGGTAACTGATTACAATTTGAGGGACCCAATCATAACGCCGCCATTTAGCGCCAACGAATATTTAAGCGCTCCCAGTTTATTGAATGAGCAACCCACCGTGGAGCTAAGTCAGTCGGGGGAGTTGCAATTTATGGAGGCCGTTCAGCCCAACGAGTCGCTTCCTTCCTGGAACTTCGGCGTCCATTACATTGAGACTGACCAACAAATTGTGCAATCTGTAGCGCCATCTAGCGACACTTACTCCGTCCAAGCTGTTCCAGAAATTTacaataacttaattttagcTGACTCCGTCCCGTCGGCGGATTCAATCCCCCTGCAATTTGTCGAATTCGGCGAGCAAACTGCAGACGCGGTGCTCGTCGGGGACCAAAACGACGTGCAATATTCGGCCGAGATCCGGGAAGAAGAACGGCCACCCACCGTCCAGTCTTGTGATACTAATCCCGTCCAGTCCGTCGCGTTGAAGAGCGCACCAGTCGCGCAATCGGtggaatttaataactttatcaACAATTCTCTTAATAAACAGACTGGACGTTACGAGTGCCCGTTATGCCTCTCGTTCAACTCGAAATACCGCGATAAGTACGCGTCGCACTTGAACATCACTCACGCTCCTCCCGAGGCCGtcgtgtggtttgaatgcaatgtTTGCGCCTTCAAAACGAAATTCAAGGATAACGTGCGACAGCACAAAATCTCGATTCACGCTTCACGTTCAACCGTCCAAAGATTTAATTGTGGCTTGTGCAAGTACAAGACGCGATCGTCGAAACTTTTCGAACTACACGAAAAGAAACATGGCGCATCCAAACCCCGCAAGTGGCTTAAATGTGACGCGTGCACCTACAAAACTTGTTTTCGGACAACTTTAAAGAAGCACGTGGCCGCTCGTCATTCTAAACTTCACGAAACGTTCCAATGCGACCGGTGCGATTTCAAAACCAAAACCGccaattatttaaagttgCACGTTAACCGGCGACATGTCGTTCGTGAAGTTGCGGCGAGACGTTTCGCTTGCTCGTATTGCCAGTTGAAGTTTCGACGCAACGACAACTTGAAGAGTCACGTTAAACAAATACATTCTGAACGCCTCGAGTGGTTCCGTTGCACGTTGTGTCCTCTCAAAACTGCTTATAAGGCCGCGTTGAAGAGCCACCTTGCCGTCGTCCATTCCGATAAAATCGTGTGGTTGAAATGCGGGTCTTGCAGTTTTCGGTCGAAATATCGCGCGACGTTGGACCGACATTCGGCCGTGCACGACAAAAAGGTGGAGATTTTTAAGTGCGATTGTTGCGCTTATGAGACGAATCGCAAATGGAGTTTGACTCGACACGTTAACACTCAACATTTGCAGCCGTCGGTGGAAGGGTTTGAATGCGAGGTGTGCGATTTTAAGACGAAACAGAAGGCCAACTTGAAGGTGCATGTTAAAAAGAGGCACGGAGAGGAGAGACCGCAACGGTTGTGGTTCAGATGTGCGGTTTGTAGTTACAAGACTTTAACGAAGAAGTTGCATGAACGACATGTGGAGGAGAAACATCCCAATTGCCGGAAGTTTCGACAGTTTCAATGTAAACAATGCGGGTTTAAGGCGAAGACTGAAGTGGGACTGAAGGCGCACGTTAGACGGATTCATTAG
- Protein Sequence
- MFSQSSNVYAELTSALTTHENYQQFANYYVAPSEDFSIEYQYSDQDSTSYFGAAMQDEELSWVSNGRERLQPLSISTVNDAKYGPIGSQINNSSTEYTELTNLASLTPEINASEDNFQMWSGPNDYASFVREIVNSGSVSSDNNIPEVQITYEVPKTQNQTVQYEVSSNTNPNEVVTTNVTTTNITTSKVGAPVKNASNGLFPCSSCPYVAKKKLYLQLHITNKHTEPENVTWYLCDKCTYKCKRKDKLKVHGINMHTPPDEIIWFECVMCEYKHKNKDEINRHMKKKHNYVPPKEQRISKTPAKNSRKTTTKPRQTPGLAVQFSNSAAISPNFTEQLEDISSILVTQGPQFADSVTEQCFEVSTIFGDQIVESGNLVTDYNLRDPIITPPFSANEYLSAPSLLNEQPTVELSQSGELQFMEAVQPNESLPSWNFGVHYIETDQQIVQSVAPSSDTYSVQAVPEIYNNLILADSVPSADSIPLQFVEFGEQTADAVLVGDQNDVQYSAEIREEERPPTVQSCDTNPVQSVALKSAPVAQSVEFNNFINNSLNKQTGRYECPLCLSFNSKYRDKYASHLNITHAPPEAVVWFECNVCAFKTKFKDNVRQHKISIHASRSTVQRFNCGLCKYKTRSSKLFELHEKKHGASKPRKWLKCDACTYKTCFRTTLKKHVAARHSKLHETFQCDRCDFKTKTANYLKLHVNRRHVVREVAARRFACSYCQLKFRRNDNLKSHVKQIHSERLEWFRCTLCPLKTAYKAALKSHLAVVHSDKIVWLKCGSCSFRSKYRATLDRHSAVHDKKVEIFKCDCCAYETNRKWSLTRHVNTQHLQPSVEGFECEVCDFKTKQKANLKVHVKKRHGEERPQRLWFRCAVCSYKTLTKKLHERHVEEKHPNCRKFRQFQCKQCGFKAKTEVGLKAHVRRIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -