Spec013944.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638208.1:4284051-4285484[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.13 8.6 7.2 0.2 1 23 4 27 4 27 0.96 2 14 1.4 97 3.9 1.9 1 21 52 72 52 73 0.92 3 14 3.3 2.2e+02 2.7 7.0 1 23 103 126 103 126 0.96 4 14 0.077 5.3 7.9 6.6 1 23 135 158 135 158 0.96 5 14 0.0034 0.23 12.1 4.6 2 23 168 190 167 190 0.95 6 14 0.0066 0.45 11.2 1.2 2 23 206 228 205 228 0.93 7 14 0.93 63 4.5 6.1 2 23 238 260 237 260 0.87 8 14 0.0046 0.31 11.7 1.6 1 23 269 292 269 292 0.97 9 14 0.00012 0.0081 16.7 0.3 1 23 301 324 301 324 0.96 10 14 0.06 4.1 8.2 2.9 2 23 334 356 333 356 0.93 11 14 0.0074 0.5 11.1 2.6 2 23 362 384 361 384 0.94 12 14 0.00055 0.037 14.6 2.2 1 23 393 416 393 416 0.96 13 14 0.0019 0.13 12.9 1.8 2 23 426 448 425 448 0.94 14 14 0.00068 0.046 14.3 3.0 1 23 454 477 454 477 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGGTTTCGGTGTAAAATTTGTCCATTTGAAACGGAATTGCAGGTAGTTTTGCTTGAACATAGAAGAAGCGACCACACCGTAACTGACAATGGGAACTACAAATTCATCAAATCCGAACCCATCGATTCAACCCTCGACATCCCCGAATTTCAGTGCTTCCGCTGCGGGTTAGAAACCTGCTCTAAACTTTTCCTAATCGAACATTCGAGGAGATGTAAAGCAACACTTGACGAAGAAAACTTCCAAAGTGTCCTCGACCTGACCGCCGTCAGTTTCACGCCTCAAAACGACGAAACTTCCTTTTGTTGTCCTCATTGCGCGTACACAACCCCGATTCGGCGATATTTCTTAAAACACCTCCGCCACAACCACATTCCGGCCAACGAAGGccggtggtttgaatgttgcGATTGTCGCTACCGCTCGCGATTCAAAAGAAACCTCCAAACTCACCGCAACAACAAACACGTCTCACTCGACGCCATCGAATGGTTAGAATGCGGTTATTGTAAATTCAAAACTCGCCACAAAAGCTACCTGAAAACCCACCAAATCAGAAAACACTCGTACGTTCCGCCACCGAAGTCGCCCCGTCAAATCAAGTGGTTAGAATGCGCGGAGTGCGACTACAAAACTCGACTGAAAGGCAACTTGAACAGCCACCTCCTCCACAAACACACTTCCGGGGCcgaaatcaaatggttgaAGTGCGACGAGTGCGATTTCAAAACGAAATCGTTGAGCAACCTGAGGTGTCACCACACTAACAAACACGTCGCCAGCGAGAACGTgcggtggtttgaatgcgggGTTTGTCGGTTCAAAACTAGATATCCGACGGCGTTCAAACGACACCAAATCACCAAACATAGTTTCAGTGGCGCGACCAAGTGGTTTATATGCGACGACTGCGGTTACCGGGCGAAAGAAGCGAGCAACTTGAAAGCGCATCGATTCACCCAACATTCCTCCGTCCACCAGCCATCGTGGCTGAAATGCAAGATTTGCGACTACAAAACTTTGAGCAAAACCCACCTGAAACTGCACCTAATCAACCGGCACGCCACCAATTTCTTAACGTGCAACAGTTGCGATTACAGAACGCCAAACATCCACCACTTGACGAGGCACCAAATCAACGTGCACGCTTTCGGTGGCGATATCAATTGGTTCAAGTGCGAGGAGTGCGAGTTTCGAACCAAATACAAGGGCACTTTGAAGCGGCACCAGGTGATGCGGCACAATCCGGACGGTGAGACTCGACAGTTGAAGTGCGACGAGTGCGAGTTTCAGTCCAAGTACAAGAGTACGTTGAAACGACACCAAATCAACCAACACGGCTTGGtgcagtggtttgaatgcgacaATTGCGAGTTTAAGTCGAAGCGAAAGGACGAGCTGAGGAAGCACCGAACCACCAAACACTAG
- Protein Sequence
- MERFRCKICPFETELQVVLLEHRRSDHTVTDNGNYKFIKSEPIDSTLDIPEFQCFRCGLETCSKLFLIEHSRRCKATLDEENFQSVLDLTAVSFTPQNDETSFCCPHCAYTTPIRRYFLKHLRHNHIPANEGRWFECCDCRYRSRFKRNLQTHRNNKHVSLDAIEWLECGYCKFKTRHKSYLKTHQIRKHSYVPPPKSPRQIKWLECAECDYKTRLKGNLNSHLLHKHTSGAEIKWLKCDECDFKTKSLSNLRCHHTNKHVASENVRWFECGVCRFKTRYPTAFKRHQITKHSFSGATKWFICDDCGYRAKEASNLKAHRFTQHSSVHQPSWLKCKICDYKTLSKTHLKLHLINRHATNFLTCNSCDYRTPNIHHLTRHQINVHAFGGDINWFKCEECEFRTKYKGTLKRHQVMRHNPDGETRQLKCDECEFQSKYKSTLKRHQINQHGLVQWFECDNCEFKSKRKDELRKHRTTKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -