Spec013943.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638208.1:4281249-4282826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.84 57 4.6 4.7 1 19 6 28 6 29 0.86 2 15 0.56 38 5.1 1.2 1 23 46 68 46 68 0.96 3 15 4.3 2.9e+02 2.4 0.4 2 20 104 122 103 124 0.88 4 15 0.58 40 5.1 3.4 3 23 147 168 145 168 0.95 5 15 0.0015 0.1 13.3 5.5 1 23 177 200 177 200 0.96 6 15 0.14 9.4 7.1 6.9 1 23 209 232 209 232 0.96 7 15 0.096 6.5 7.6 4.9 2 23 248 270 247 270 0.92 8 15 1.1 72 4.3 5.0 1 23 279 302 279 302 0.87 9 15 0.00049 0.034 14.8 2.3 1 23 311 334 311 334 0.96 10 15 5.5e-05 0.0038 17.7 1.1 1 23 343 366 343 366 0.95 11 15 5e-05 0.0034 17.9 1.8 2 23 375 397 374 397 0.95 12 15 0.00042 0.029 15.0 3.2 2 23 407 429 406 429 0.94 13 15 0.00052 0.035 14.7 4.5 1 23 438 461 438 461 0.97 14 15 8.4e-05 0.0057 17.2 2.1 2 23 471 493 470 493 0.96 15 15 0.0011 0.076 13.6 1.7 1 23 502 525 502 525 0.93
Sequence Information
- Coding Sequence
- ATGGCTTCGACCCCCTATAAGTGCCCCCATTGTCCCTACGAATCCTGTTGGACGTTTGCGATGGCCAGCCACTACAAGAGCCACCACTGGAACGTATCATTCAAGCCATTTAATTGCGCCACGGAAGTAAACGCGTACCAATGCGAAGTTTGTACCTTCAACACAGAGTCGCAGTTAGTTTTCTACCAACATCTTAACCGTCACGTTACGGCTCCCACGTGgataaatatttcaaacaatTGGGCTTGTATCAAGCCGGAACCCCTCGATTTAGACGACGAAACACCCGACCTTAAAGTAGCGGAGCTGCAATGCTTCCGGTGCGGCCTACTGACGTTTTCCAAAGTTTTCTTGTCCCGGCATTTGACCGACTGTGACGTGACAGTGAAACTAGCAGATCCGACTGGGGTCGgtcaaaatgaaaaaaatttcaattgttgCCCCCATTGCTCGTACAAAACCCCCATTAGAGGGTATTACTTGAAACACCTCCGACTTAACCACATACCGGACAACGAGGgtaaatggtttgaatgttgcGATTGCGGATATAGGACTAGATTCAAGGCTAATTTGAAGACGCATCGCAAGTACAAACATGTTTCCGTTGACGAGATCAAATGGTTTGATTGCAGCCTCTGCAGTTACCGGACTAGATTCAAGAACCACTTCAAGACTCATCAGATGAGAAAACATTCCAGTCTTCCCCCACCGAAACCGGCTTTCGACGGAAAATGGTTGGAATGCGACAAGTGCAATTACAAAACTCGATTGAGGCGCAATTTGAAAACGCACCAGTTCCACAAGCACGCCTCGAGCGCGttattcaagtggtttgaatgcaacgAGTGCGATTTCAAAACTAAAGCTTCGAGCAACTTGAAATGCCACAAAATCCACCAGCACGCGCCGACCGACGAAATCAAATGGTACAAGTGCAGCGAGTGCTCGTTAAAAACGAAATACAAAGCCACTTTGAAACGTCACCAGATCAACCAGCACAACTTCAACGgcgaaatcaaatggtttaaatgcaaCGACTGCGACTACACAGTCAAAGACGCCAGATATTTGGAGAAACACCGCATCAACAAACACGGCGACGGTCAAGTCAAACTGTGGAAGTGCAACGATTGCGACTACGAAACGCCCCGCAAAAGCCACCTGAAACTTCACCAAATCAGCAAGCACGATTCGAACGTCGGCGCGAATTCGCTGACTTGCAACGAGTGCGGCTACAAAACGCAGCATTTAAGCCACCTGACCCGACACCAAATCAACGTGCATTCGGCGGTTGACGGAATCGACTGGTTCAAATGCGACGGGTGCAGTTACAAAACGAAACACAAGGGAACGTTGAAACGACACCGTTTGATGCAGCACAAGGCGATCGACAGCGCCAGGTTGTTGAAATGCGACCAGTGCGGCCTACAAACGAAGTACAAGAGCACGCTGAACCGCCACCAGAGGCAACAGCACGACCCGAATAACACCAAcaagtggtttaaatgcgACATGTGCAGCTACAAGTCGAGACGGAGCGACTATCTGGCGAAACACCAAGTCCTCAAGCATTAG
- Protein Sequence
- MASTPYKCPHCPYESCWTFAMASHYKSHHWNVSFKPFNCATEVNAYQCEVCTFNTESQLVFYQHLNRHVTAPTWINISNNWACIKPEPLDLDDETPDLKVAELQCFRCGLLTFSKVFLSRHLTDCDVTVKLADPTGVGQNEKNFNCCPHCSYKTPIRGYYLKHLRLNHIPDNEGKWFECCDCGYRTRFKANLKTHRKYKHVSVDEIKWFDCSLCSYRTRFKNHFKTHQMRKHSSLPPPKPAFDGKWLECDKCNYKTRLRRNLKTHQFHKHASSALFKWFECNECDFKTKASSNLKCHKIHQHAPTDEIKWYKCSECSLKTKYKATLKRHQINQHNFNGEIKWFKCNDCDYTVKDARYLEKHRINKHGDGQVKLWKCNDCDYETPRKSHLKLHQISKHDSNVGANSLTCNECGYKTQHLSHLTRHQINVHSAVDGIDWFKCDGCSYKTKHKGTLKRHRLMQHKAIDSARLLKCDQCGLQTKYKSTLNRHQRQQHDPNNTNKWFKCDMCSYKSRRSDYLAKHQVLKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -