Spec017291.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- Tcjhe
- Assembly
- GCA_951805265.1
- Location
- OX638210.1:8690856-8696439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.014 0.94 10.2 0.4 1 23 262 284 262 284 0.95 2 10 0.066 4.5 8.1 1.9 1 23 288 310 288 310 0.96 3 10 9.2e-05 0.0062 17.1 0.7 2 23 316 338 315 338 0.91 4 10 3.5e-05 0.0024 18.4 6.6 2 23 346 367 345 367 0.97 5 10 0.0023 0.16 12.7 1.0 1 23 375 397 375 397 0.98 6 10 0.00043 0.029 14.9 2.9 1 23 402 425 402 425 0.95 7 10 0.012 0.79 10.5 0.2 1 20 431 450 431 452 0.94 8 10 0.0009 0.062 13.9 0.3 3 23 473 493 471 493 0.97 9 10 6.8e-05 0.0046 17.5 0.6 1 23 498 521 498 521 0.95 10 10 2.8 1.9e+02 2.9 4.2 1 19 527 545 527 550 0.90
Sequence Information
- Coding Sequence
- ATGTGGCAACAAGTTCGCCGCCAATTGCTGCTAGCCCCCAAAGCTGGTTTCGAAATTGTGGGGGCGGCGCCGACAATTTTGGTGATGCCCGTGCAGGACTTCGGGGGGAACGGAAATTTGATGAATTTCGCTATTGTTTCTAACGCCGACCAATACGCTGAATTGGCCAAGATCGGGGACGCCGCCCTTCCCAAAACTTTCGTCTACGAATCGATTCGCTGCTACGTCCCAGaactTTTTGACACTCGCAACATTTGTCGCACCTGCTACCGGGCCATCGTCGACGGAAACCTATTTCGATTGTGCGACGACTCTTCGACGTCCCTCCGCGACATGTTGTCGCTCGTTTTGGTCAACATCGACCTGTACATTTGCGCCGACGCCGCCATTTGTCTCCAATGCAAAAATTTGCTCGAATCCAGTTACCAGTTCGTCAAGAAATGGCAGGAAACCGAAGAAAGATtcgaaaagttgaaaaaacaaCGGGGCAAAGACGCCAACCTCGTCGTGTTCCCCGAGAAACGCCCCAAACCAGCTTCTGACGTCACGCCGGAACATGGTGGCGCTAGTAGCGCTGACACTAAGTCACCTTCTCGGATGGACGCGGGTCACTTCTCCGACCACGCCTACTTTCGTCGTCCCGTTTCGATGCTGGAGGATCTGTTggggaagaagaagaaaaagaaagtcgCGCCGTCgttgttgaagaaaaaattcgattacaatttgaaattgagcgcCGACGCGTTGTCGAAACAAGTGAAGATGCGCGACGACGTACCGTTTCTGTGTCAAATTTGCGGCGCCGTCTTGCGCAATCGCGTGCGGTTCACGCGTCATCTCGACAAACACCGGCAAATTCACAAGTGCGACCGTTGCGATTACGTCGCTTCGTACGCGTACGGTTTAAAGACGCACTCGACGAAACACGCCGAAAGAACTCTTCGTTGCGAATTTTGTCCGAAAATGTTCAATAACAAAAGTACGTTGAAAATGCACGTGGATTACGTCCATTTGGGCGTCAACGATCAAATCCAGTGTCACGTTTGCGGGAAACAATTCAAACATCGCAGTTACATGCGTCACCACATGTTGGTACATCGCGGCGGCGTCGTCAAAAAGTACAAATGCGAAATTTGCTCGAAAAGTTATTCGGCCGCCAACAAATGGCGAGCGCACGTCCACAGCCACACCGACACCTGGTACAAATGTCACATCTGCAACAAACAATTGAAGTACGAGTATTCGTTGCGCAAACACGTCGCCATTTTTCACGAGAACAAAAGCAAGCATCGGTGCGAGATCTGCAACAAGGGCTATTGGAAGAACGGCGATTTACAGCGCCATCTGGCGAGGGGTGTTTGTAACGAAAATTCGAAATTGAGCAGAACGAGCCGGGTGCTGTTGGGCACCGATTGCGAACTTTGCGGCAAAGTTTTCGGTACCAGAATGCGATTGGTCGTTCACAAAAGGTCGCACATTGACGCCACGTTCCCGTGCAGTATCTGCGGGAAGAAGTTCAAGTACCAAAAGTCGGTCGAGACGCATGTCGAGATTTTTCACGGGAATCGGGGGAAATACAAGTGTGAATTGTGCGACAAAGGGTACTGGAAGAGGAACGATCTGTTGAAACACTGCTTCAAGTTTCACAACGTTCAAATTGTCGATGAACTCCAAAGTGATGGCGCCGAAACGAGTCAAcCACAACAGAATGAAGTTCCTGTAGTCACGACCACTCACGGAAAAGTTCAAGGAACTGTAGAAGACATTACTGATGACGACGGTAGTTGTTCTTACTTTGCTTACAGGGGAATCCCGTACGCCAAACCTCCGTTGGGGGAATTGCGGTTCCAGCCGCCTCAGGAGCCCGAACCTTGGGATGACGTCAAGAATTGTACAAATTTCGGAAATATCTGCGCCCAAGCGAGAGGAAGCAACGTCATCGGCGATGAAGATTGTCTATTCCTGAACGTCTACACTTCCAAAGTGGATCCAAAAGAAATGAGACCTGTCCTCTTCTGGGTACATGGCGGTTCTTACGTGAAGGGCAGCAGCAATACCTACCCTCCCGACTATTACCTGAAGCGTCCCATCGTTTTGGTGACCGCCAATTACCGGCTCGGCGCTTTTGGTTTCTTGTCGGTCAACGATTCCAACGCCTATGGCAACGCCGCACTGAAGGACGTTATAGCCGCGTTGGAGTGGGTCCAAAATAACGTCGCCAATTTCGGGGGAGACCCCGCCAGAGTCACGCTTGGCGGATCGGGCTGTGGCGCCACCATCGCGTCGGTCCTGCGATTAAGCCCCAAGGCCCCCAAATTGTTCCACCAATTGATCGGCCACAGTGGAACGGCGATAACTTTGAGACATATACAACGAGACGTGCCGAGGTACACGTACGCCATggcgaaattttttaaaattaacaacgattCGACCAGTGAAGTCCTCAAGGAACTTCAGAAGATTGCAGTTAGTCGTCTGGTTTTGGCAAGCACCGTCTACATCAGTAGCAGAGCTGGCTACAAAACAGCTATTGAGGGATTTCCTTTTATGCCGACGATTGAGGTTGAACATGAGGGCGCGGTCATCACCCAAAATCCCTATGAAGCCTTCGAGAAAGGAAACTTCTATAAAACTCCCTTCATCATTGGTTGCAACTCCGCCGAAGCTGCTTATCTTTTCAATTACGCCAAATCCGTTCATGGCGGTGCCTACGACTATGACCCCTCAGTGTTCATCTCCCAGTCGTTCAACAACCCGAACAATAAGGAACTCGGTCAAAAGATTCGCGACCACTTTTTTGGCAACGCTTCAGTTGAAGAGAAGCCTGAGATGTTTTACAAGtttttgactcAAGACCTGTACATGCGAAGCGTCAGGAAAATGGTGGACTTACTTAGAAAGTACGTCCAAGGCTATTTCTATAGGTTTTCGTACAAAGGCACGCACACTTACAAAGGAGTTCCAGGCGTTAACAATGGCGAGGAACTTCAGTATTTTTTTCCTCAAATGGGAAGAACTGAGAATTTGACGGATGACGATCTGTTAACTAGAAAGCGTGTGGTGATGATGTGGACGAATTTCGTCGAATGCGGGAACCCAACTCCCGAATGCGAGTGTATATTAAACGGAACAGTTTGGTGTCCGGTCGATGACCAAGATCCGGTGCATTTCTTGGATATTGGCAAAACTTTGGAGCCCGGATTGGATCCTGATGAGGAAGACTACGACTTTTGGAAAGGCGCATTTGAGAAATTCGGCAATCCACCGTTTTTCacctattaa
- Protein Sequence
- MWQQVRRQLLLAPKAGFEIVGAAPTILVMPVQDFGGNGNLMNFAIVSNADQYAELAKIGDAALPKTFVYESIRCYVPELFDTRNICRTCYRAIVDGNLFRLCDDSSTSLRDMLSLVLVNIDLYICADAAICLQCKNLLESSYQFVKKWQETEERFEKLKKQRGKDANLVVFPEKRPKPASDVTPEHGGASSADTKSPSRMDAGHFSDHAYFRRPVSMLEDLLGKKKKKKVAPSLLKKKFDYNLKLSADALSKQVKMRDDVPFLCQICGAVLRNRVRFTRHLDKHRQIHKCDRCDYVASYAYGLKTHSTKHAERTLRCEFCPKMFNNKSTLKMHVDYVHLGVNDQIQCHVCGKQFKHRSYMRHHMLVHRGGVVKKYKCEICSKSYSAANKWRAHVHSHTDTWYKCHICNKQLKYEYSLRKHVAIFHENKSKHRCEICNKGYWKNGDLQRHLARGVCNENSKLSRTSRVLLGTDCELCGKVFGTRMRLVVHKRSHIDATFPCSICGKKFKYQKSVETHVEIFHGNRGKYKCELCDKGYWKRNDLLKHCFKFHNVQIVDELQSDGAETSQPQQNEVPVVTTTHGKVQGTVEDITDDDGSCSYFAYRGIPYAKPPLGELRFQPPQEPEPWDDVKNCTNFGNICAQARGSNVIGDEDCLFLNVYTSKVDPKEMRPVLFWVHGGSYVKGSSNTYPPDYYLKRPIVLVTANYRLGAFGFLSVNDSNAYGNAALKDVIAALEWVQNNVANFGGDPARVTLGGSGCGATIASVLRLSPKAPKLFHQLIGHSGTAITLRHIQRDVPRYTYAMAKFFKINNDSTSEVLKELQKIAVSRLVLASTVYISSRAGYKTAIEGFPFMPTIEVEHEGAVITQNPYEAFEKGNFYKTPFIIGCNSAEAAYLFNYAKSVHGGAYDYDPSVFISQSFNNPNNKELGQKIRDHFFGNASVEEKPEMFYKFLTQDLYMRSVRKMVDLLRKYVQGYFYRFSYKGTHTYKGVPGVNNGEELQYFFPQMGRTENLTDDDLLTRKRVVMMWTNFVECGNPTPECECILNGTVWCPVDDQDPVHFLDIGKTLEPGLDPDEEDYDFWKGAFEKFGNPPFFTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -