Spec004352.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638203.1:18845720-18856448[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.72 10.6 7.2 1 21 16 36 16 37 0.95 2 13 0.00013 0.009 16.6 1.9 1 23 45 67 45 67 0.98 3 13 7.1e-05 0.0049 17.4 1.9 1 21 82 102 82 103 0.95 4 13 0.015 1 10.1 1.9 1 14 111 124 111 124 0.92 5 13 0.00012 0.0084 16.6 2.2 1 21 128 148 128 149 0.95 6 13 2.8e-05 0.0019 18.7 3.2 1 21 157 177 157 181 0.92 7 13 0.00037 0.025 15.1 3.2 1 22 188 209 188 209 0.96 8 13 0.072 4.9 7.9 1.6 1 21 230 250 230 251 0.94 9 13 0.15 10 7.0 1.7 3 23 261 282 259 282 0.96 10 13 0.065 4.4 8.1 4.6 1 21 332 352 332 353 0.95 11 13 0.015 1 10.1 3.1 1 23 361 385 361 385 0.97 12 13 0.0011 0.078 13.6 1.2 1 21 400 420 400 421 0.95 13 13 0.068 4.6 8.0 3.5 1 23 429 452 429 452 0.96
Sequence Information
- Coding Sequence
- ATGCTCGTATCGTTCCAAGAGAAAGGCAACCTTAAAGAAACACAGTTTACGTGCCCAACTTGTTTCCGATGCTACAAACACAAACAGTCCTTAAACAATCACAAAAAGTTTGAATGCGGCAAAAATCCAATGTTCTCCTGCAGTTTGTGTCCGTACAAAGGCAAAAGAAAAGACCACGTTGTCCGGCATATGCGCATTCACGATAAGAAGGAAGTCTCAGATCGGCCCtGGTTTAACCGGGCTTTTATTTGCCATCAATGCTCGAAGATTTACAAGAACCAGGGAACCTTAACACGTCATCTCAAGTTTGAGTGTGGAATAGACCCTCAATTTTCTTGTCCGCACTGCGACAGGAAGTTCGCAAGGAAGTataTCAACCGGTTCCAGTGTCAACGTTGTGAAAAAACTTACAAATACCCCCATACACTTCAACGCCACGTGAAGTTGGAATGCGGTCGAGAACCTCAATTCCCATGCACTATTTGCCATAGAAAATTTTCTCATAATTTTAGCCTAAAAAAGCACCTAAGTGGAATCGGACATTCGATGGTGGACGGAAAATTTCAATGTAACTCTTGTTTCAAATCATACAAACACTATCCAAGTTTGTGGCGCCATATGAAAAAAGAGTGTGGACTAGACCCTCAATTTTCCTGTAgcTATTTGTTTGTGTTGGACAGAAACGAATTCGCTTGCGGGAACTGTTGTAAGACGTACGCCAAAAAATCGACCGTGGCCCGACATATGAAGTACGAATGCGGAAAACTGCCAATGTTCGGATGCTCCTTATGCCCCTACAGGGGCTATCAAAAAACTCACGTCGAGAGGCATCTCTCCAGAAGACATAACATTCTCACCAAACCCGAGATAGCAAAagcaattATGCGAAACAGTTTCTTTGCGAAGTATGCTCTAAGTCCTACAAGCACTCCCCCTCGTTGTATAACCACAGAAAGTTCGAGTGTGGCCAGTTGCCGAGatgAACACAAAATGTACCCCTGCATGGTGTGCTACCGGTCCTACAAACACTACCAGTCGCTCCATAGACACAAGAAGTTTGAATGCGGAAAGCAACCCCTATTCAGATGTGACCGCGACGGTTGCGATTTTGTGACCAAAGTGAAATGCAACCTGAAGCAACATCTGTATAGACATTCTGAACAATGGCAATCGTTTCGAAAGAGAAAAGGGCCATTGTTTGCGTGTTCGAGGTGCAAGAGGCCCTACAGATACCAACGCAGTTTAGCTCGCCATCAGAAGTACGAATGTGAACGGGAGCCGAAGTATCACTGTGCTAAATGCTCCTACAAGGCAAAATATAAAGCGAGCTTGATCAAACACTTCAGAAACATGCATAACTAG
- Protein Sequence
- MLVSFQEKGNLKETQFTCPTCFRCYKHKQSLNNHKKFECGKNPMFSCSLCPYKGKRKDHVVRHMRIHDKKEVSDRPWFNRAFICHQCSKIYKNQGTLTRHLKFECGIDPQFSCPHCDRKFARKYINRFQCQRCEKTYKYPHTLQRHVKLECGREPQFPCTICHRKFSHNFSLKKHLSGIGHSMVDGKFQCNSCFKSYKHYPSLWRHMKKECGLDPQFSCSYLFVLDRNEFACGNCCKTYAKKSTVARHMKYECGKLPMFGCSLCPYRGYQKTHVERHLSRRHNILTKPEIAKAIMRNSFFAKYALSPTSTPPRCITTESSSVASCRDEHKMYPCMVCYRSYKHYQSLHRHKKFECGKQPLFRCDRDGCDFVTKVKCNLKQHLYRHSEQWQSFRKRKGPLFACSRCKRPYRYQRSLARHQKYECEREPKYHCAKCSYKAKYKASLIKHFRNMHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -