Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: -
Assembly: GCA_951805265.1
Location: OX638206.1:10134744-10140243[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0096 0.66 10.7 0.1 2 20 214 232 213 234 0.93

2 10 0.3 20 6.0 1.5 1 23 247 269 247 269 0.96

3 10 0.0015 0.11 13.2 2.6 3 23 306 327 304 328 0.90

4 10 1.2 83 4.1 0.0 1 19 384 402 384 405 0.78

5 10 4.3e-06 0.00029 21.2 1.9 3 23 433 453 431 453 0.97

6 10 5.1e-06 0.00035 21.0 1.2 1 23 459 481 459 481 0.98

7 10 6.6e-07 4.5e-05 23.8 1.3 1 23 487 510 487 510 0.96

8 10 9.5e-08 6.5e-06 26.4 0.7 1 23 516 538 516 538 0.99

9 10 4e-07 2.8e-05 24.5 2.1 1 23 544 566 544 566 0.99

10 10 1.1e-06 7.4e-05 23.1 1.6 1 23 572 594 572 594 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0096	0.66	10.7	0.1	2	20	214	232	213	234	0.93
2	10	0.3	20	6.0	1.5	1	23	247	269	247	269	0.96
3	10	0.0015	0.11	13.2	2.6	3	23	306	327	304	328	0.90
4	10	1.2	83	4.1	0.0	1	19	384	402	384	405	0.78
5	10	4.3e-06	0.00029	21.2	1.9	3	23	433	453	431	453	0.97
6	10	5.1e-06	0.00035	21.0	1.2	1	23	459	481	459	481	0.98
7	10	6.6e-07	4.5e-05	23.8	1.3	1	23	487	510	487	510	0.96
8	10	9.5e-08	6.5e-06	26.4	0.7	1	23	516	538	516	538	0.99
9	10	4e-07	2.8e-05	24.5	2.1	1	23	544	566	544	566	0.99
10	10	1.1e-06	7.4e-05	23.1	1.6	1	23	572	594	572	594	0.98

Sequence Information

Coding Sequence: ATGGAAAATGAAACGGGTCCGGAACTGATGGAAAACGTCGTCATCGGCGATGTCGCCGCGGCCCCTCAATACATGATCCAGCGAATTCCCGAAAATGCTCAGTTGCTCAGTACTGACCTGTTGCAGCACCACAACGGTTTAGTTGTTGATTTGGCCGGAGGGGACTTTATCCCAGTTACTTATCCTTCCGAAGCTCTGTTATCTCACGATTTAACTGATGAAGACCGAAATTTGGCTGCTGCTTTAGTTGCTGTGCAACTTAGTCAGCAACAGAAGCAGCAGCAATTACACGATTCAGCGCTACCTCCTCTAGTTCAAAACCCCACTTTAGATAACAAGATTTTGGAGGAGCAACAGTTGATTTTGACCGACAAGGAGGGGACGATTGCTAACGGGTATTTGCAAATTGTGGGATCTGATAACATTTACGTTGGAAAACAAGCGCTTCCGAAAATAATCAACACTCGGTTTCCTGGAGTTACCCAGAGTTTTAACGGTAACGCTCGTTCTGAGAAATCAGAAGATGAAAAGCGGGGGTCTGATGGGGAGCACAGGGCAGACATCCGGTCGTCGAGGAAAAGTTTGCCGCATAAAAAGCGTATATCGAGGAAACTGAAAAAACAAGCCCCGATCCGGGTCCAGTGCAGTCTTTGCGAACAGACGTTTGCATCCAACGATGAATTTGCTCAACACGAACTTCTTTGTCAGACAACAATCACTCCAATTCACCCCACTTCATTCTCTTGCCAAATCTGCACATCTACGTTCCAAGATCAACTAAGGTTCTTTGAACATTTAAAGGCACATTATGAACCGCCAGACCGACAACCACCCAATCAAATGGGACAACGAGTTGAAAAAGTGGAAGCTGAACCGGAGAAAGACAATATTTTTCCTACACTTTTGCATCTGACTTGTATCCAATGTAGTAAAACATTCCGGCGACAGAAGGCTTTCGAAAGTCACATGAAGGAAGTACATCATAAAGAAGAGCTGAACGAATTTAGCGAAACTGAGGACCTAATGGAAGGAATCAACGTAGTCGTTGATGGAAACGAGCCGAATTCTGACAATGACACGAAAGCTTgGTACAGGGAAGATGAGCTCCATCAGACTGAAGAAGACTTAAAAGAGCTTGAAGCCGAAGAGCACGTTTgtcaaatttgcaaacaaCCATTTCCCTTGCGCGCTATTTTGCTGCAACATCTTGTGACCTGCAGAACTGACACGGGTAATACAGagCCGACGGCACCTTCTCTAGTTAAgcgaaaattaaagaaaaaaggaaGCATGAATTGTCCGCAGTGCGACCGAGTTTTTACTCACAGAAACTCTCTCGTGTACCACATGAGAAGTCACACCGGGATCCGACCGCATCAGTGCGAACAATGCGGCAAAAGTTTCTTTGCTTCAAGCGCCCTCAAAGTTCACTTAAGACTGCATTccgGTGATAAACCGTATCATTGCGAAGAATGCGGCAAAAATTTCCGGCAATGGGGCGACTTAAAATACCACATGACCTCAATACACTCGAACGAGAAGCAGTTTCAGTGCGAGTATTGCGGAAAGGATTTTGCTCGTAAATACTCGTTGATCGTCCATCGCAGGATCCATACAGGGGAGAAGAATTACAAATGCGAATTTTGCGGGAAAACTTTCAGAGCGTCCTCATATCTGCAGAACCATAGAAGAATCCATACGGGTGAAAAGCCGCATGAATGTGGGGTTTGTGGGAAACCTTTTCGTGTTCGTTCCGACATGAAGCGCCACCAAAAAACTCACTCGAAGCGCTCGGCCTCTGACAAACCTTTGAGATACGCTTCGACGGCCTCTCCGTCCTCTGAAAAAGTGATAAAGTCCGAATCCGGCAGTCTAAAGTCTGAAGACGTTTATGAACTTAACGTGGTCGAGAATAATGATGGTGGCCAAATTTTGGGCTACGATCAAGACCAATTGGATTCTACTGTCAGGGATGGAGGCACTTTgtaTTCTTCCGGGcaacaattgtttttagttAGTTATGCCGCTGATGTGCCCGTCAGGAGCGTGGAATCTTCATCGACTTGGATTCCCATGAATTCTTGA
Protein Sequence: MENETGPELMENVVIGDVAAAPQYMIQRIPENAQLLSTDLLQHHNGLVVDLAGGDFIPVTYPSEALLSHDLTDEDRNLAAALVAVQLSQQQKQQQLHDSALPPLVQNPTLDNKILEEQQLILTDKEGTIANGYLQIVGSDNIYVGKQALPKIINTRFPGVTQSFNGNARSEKSEDEKRGSDGEHRADIRSSRKSLPHKKRISRKLKKQAPIRVQCSLCEQTFASNDEFAQHELLCQTTITPIHPTSFSCQICTSTFQDQLRFFEHLKAHYEPPDRQPPNQMGQRVEKVEAEPEKDNIFPTLLHLTCIQCSKTFRRQKAFESHMKEVHHKEELNEFSETEDLMEGINVVVDGNEPNSDNDTKAWYREDELHQTEEDLKELEAEEHVCQICKQPFPLRAILLQHLVTCRTDTGNTEPTAPSLVKRKLKKKGSMNCPQCDRVFTHRNSLVYHMRSHTGIRPHQCEQCGKSFFASSALKVHLRLHSGDKPYHCEECGKNFRQWGDLKYHMTSIHSNEKQFQCEYCGKDFARKYSLIVHRRIHTGEKNYKCEFCGKTFRASSYLQNHRRIHTGEKPHECGVCGKPFRVRSDMKRHQKTHSKRSASDKPLRYASTASPSSEKVIKSESGSLKSEDVYELNVVENNDGGQILGYDQDQLDSTVRDGGTLYSSGQQLFLVSYAADVPVRSVESSSTWIPMNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01283652;
90% Identity: iTF_01283652;
80% Identity: -