Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: -
Assembly: GCA_951805265.1
Location: OX638205.1:6121804-6127722[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00029 0.02 15.5 5.1 1 23 225 247 225 247 0.98

2 11 6.3e-05 0.0043 17.6 3.4 1 23 253 275 253 275 0.99

3 11 0.0028 0.19 12.4 2.8 1 23 283 305 283 305 0.96

4 11 0.00068 0.046 14.3 1.9 1 23 311 333 311 333 0.98

5 11 2.2e-05 0.0015 19.0 1.1 1 23 342 364 342 364 0.98

6 11 1.1e-05 0.00074 20.0 2.2 3 23 372 392 370 392 0.96

7 11 4.5e-05 0.0031 18.0 0.6 1 23 398 420 398 420 0.98

8 11 5.2e-08 3.6e-06 27.3 1.8 1 23 426 448 426 448 0.99

9 11 0.00014 0.0093 16.5 0.4 3 23 456 476 455 476 0.99

10 11 2.6e-05 0.0018 18.8 0.7 1 23 482 504 482 504 0.98

11 11 1.4e-07 9.8e-06 25.9 0.8 1 23 510 532 510 532 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00029	0.02	15.5	5.1	1	23	225	247	225	247	0.98
2	11	6.3e-05	0.0043	17.6	3.4	1	23	253	275	253	275	0.99
3	11	0.0028	0.19	12.4	2.8	1	23	283	305	283	305	0.96
4	11	0.00068	0.046	14.3	1.9	1	23	311	333	311	333	0.98
5	11	2.2e-05	0.0015	19.0	1.1	1	23	342	364	342	364	0.98
6	11	1.1e-05	0.00074	20.0	2.2	3	23	372	392	370	392	0.96
7	11	4.5e-05	0.0031	18.0	0.6	1	23	398	420	398	420	0.98
8	11	5.2e-08	3.6e-06	27.3	1.8	1	23	426	448	426	448	0.99
9	11	0.00014	0.0093	16.5	0.4	3	23	456	476	455	476	0.99
10	11	2.6e-05	0.0018	18.8	0.7	1	23	482	504	482	504	0.98
11	11	1.4e-07	9.8e-06	25.9	0.8	1	23	510	532	510	532	0.99

Sequence Information

Coding Sequence: ATGGAAGAAAAGAACTTGAATGCAGTTAATGTTAATGTATCAGTCTTACTGGAGTATTTTAACGAGAAGTCCAAAGTATATCAGTGTAGTTCCTTATGGTCTAAGTACTCAATGATTAAAAGGATGTTGTTGGTCAAAAAAGATGTGGATATTAGCTCATATCGTAAAGTGGtgtcatttttaaaacataataGTGTTGGTCACGAGGCGAAGAAAGCTAAGGTGTTGTCTAAGGAGAATGTGATCGATTTTATTGCCGATGCTCCAGATGATACGTATTTAATGACGAAGGTTGCTCTAGTATTTGGAATTTATGGAGCCTTAACTAGAGAAGAACTTACGAATATTGGAGTGCTCGTGTCCGGCTTCCTTCAACAAATCACGAATTTGGAGTTGTCTGAAAGCGACGATctatccaaaattttatgtccAACTTGTTTCGAAACGTTATCTGACGTTTTTCGTTTGATTCAACTGTGCATTTCTTCGAATTCAGTATTACGAAGTGCCCTAGATGTGATAAACAAACCAACAAAACCTCTTTGCCCCAGTGATGATGCTGAGCCAATAGCTAGCTCAAAACGAGAAGAAACTGAATCAGAGTCTAACGATTGTTTATTTGATAATGCCGAGACCAAAGAAAACAACTCGCCCACTAAGACAGTGGACAAGTATTGTTGTGGCAAATGCAAAGTCACCTTTAACAACAAATCGAAACTACTCAAACACGAAAAAACCCACAATGAagtaaatctttttaaatgtGATGAATGCTTGCAAacgttttcgaaaaaactGCATCTAAACGTCCATTTGCGGTCACATATCAAGAATGAAGACAAACAATTTACTTGCAGTACTTGTAATAGGCAGTTTATTTACGAATATTTACTTAAACAACACGAATTTAAACATACTGATCAAAAACCATTTCCTTGCTCGAAATGCAGTAAAGggTGTTTAACTGCAGAAAGTTTGAAGAGGCATATGAAAGTTCACGACCAGAACTACATTAGGAAAAAGCATCAATGTCAAATATGTTCCAAGGAGTTTGCTTATCCCAGTTTTTTGGCAGAACATATGAAAAACCATACAGGAGAAAAACCCCATTTGTGTTCAATCTGTGGCAAGGGATTCAGACAAAGCGGGGCTTTGCACTATCATCAGAGGGTGCATTCCGGATATAAACCTTTCATGTGCGATGTATGCAATGGAACTTTCATGTCGCAAAgTGTTCTGAAAGTACATATGAGAAAGCATACGAATGAGAGACCTTATGTTTGCCACATCTGCGGCATGGCATTTAGACAGTCCACTGATCTAAAAAGTCATCAAAGAACACATTCCGGCGACAAGCCGGTATTGTGCACCATATGCGGAAAGCGCATGTCAACTACAGGTCAGCTAACCATTCACATACGGTCCCATACAGGTGAAAAGCCATTTGTTTGTCAGCGTTGTTCGAAAGCATTTGCAACCAAAACAATGTTGGTCAAACACGAACGCATCCATACCGGTGAACGACCGTACGTGTGCGACATCTGTGGTCGAGCCTTCAATCAAAGCAGCACTTTGAAAACTCACAAGAACACCCATCAAGCTAACAAGAAGAGAAAATGGAGTGATCGACGAAAAACCAAATATACCCTAACTGGAAGTGTTGATAAAGAAGTGGATGAATGTTTACTGTATAGGCACcatattgaaaatattgaaactgaAATTGTAACTGATCAATTTATGGGTGACAGTGTTGAAGAAATAAGTGTAGTGAAGAGTAGTGATCACGATGAGAATGTTAAAGCTCACTTTACTGTGATTTTGCCAGCCCCTATTCCGCTATTGCATAATTTATAA
Protein Sequence: MEEKNLNAVNVNVSVLLEYFNEKSKVYQCSSLWSKYSMIKRMLLVKKDVDISSYRKVVSFLKHNSVGHEAKKAKVLSKENVIDFIADAPDDTYLMTKVALVFGIYGALTREELTNIGVLVSGFLQQITNLELSESDDLSKILCPTCFETLSDVFRLIQLCISSNSVLRSALDVINKPTKPLCPSDDAEPIASSKREETESESNDCLFDNAETKENNSPTKTVDKYCCGKCKVTFNNKSKLLKHEKTHNEVNLFKCDECLQTFSKKLHLNVHLRSHIKNEDKQFTCSTCNRQFIYEYLLKQHEFKHTDQKPFPCSKCSKGCLTAESLKRHMKVHDQNYIRKKHQCQICSKEFAYPSFLAEHMKNHTGEKPHLCSICGKGFRQSGALHYHQRVHSGYKPFMCDVCNGTFMSQSVLKVHMRKHTNERPYVCHICGMAFRQSTDLKSHQRTHSGDKPVLCTICGKRMSTTGQLTIHIRSHTGEKPFVCQRCSKAFATKTMLVKHERIHTGERPYVCDICGRAFNQSSTLKTHKNTHQANKKRKWSDRRKTKYTLTGSVDKEVDECLLYRHHIENIETEIVTDQFMGDSVEEISVVKSSDHDENVKAHFTVILPAPIPLLHNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01283634;
90% Identity: -
80% Identity: -