Spec009588.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638205.1:18185612-18187579[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.037 2.5 8.9 0.2 1 23 170 193 170 193 0.92 2 9 0.00039 0.027 15.1 0.4 1 23 197 220 197 220 0.97 3 9 5.5e-06 0.00037 20.9 3.4 2 23 245 266 245 266 0.97 4 9 0.00031 0.021 15.4 0.3 1 23 272 294 272 294 0.92 5 9 9.3e-06 0.00063 20.2 0.1 1 23 300 322 300 322 0.99 6 9 1.4e-07 9.5e-06 25.9 0.5 1 23 328 350 328 350 0.98 7 9 1.2e-05 0.00084 19.8 1.2 2 23 357 378 356 378 0.97 8 9 1.6e-08 1.1e-06 28.9 0.9 1 23 384 406 384 406 0.99 9 9 1.2e-06 8.2e-05 23.0 0.0 1 23 412 434 412 434 0.98
Sequence Information
- Coding Sequence
- ATGAGTCTTTCGATGAACTCGCCTTATCACAACATTTGTCGAACTTGTTTATCAGACAGTGTAACTGTAAAACCGCTGTTCAGCTTGGAAGAAATCTTAAACCAGTCAACAACACTGTCTAACATGTTAATGGAGTGTGCTTCAGTTTTGGTTATTAAAGATGACGGTCTTCCCGACAATATCTGCTTCAATTGTGCACAAGAGCTGCAAAGATCGTTTTTGTTCAAACGATTATGTGAAACTTCAGATGCAACTTTGAGAAATAGAACAATTTCCATGGAGGTGCAAATAGACGAAGCAGGAAGCGTTTCTAACATTCCACCAAAGGCGGAATTTAGTGTTGAAGAAAATGAACTAAAACCTCAGTTTGATAGTTGTTCAGAAGGTAGTTCTTTTGATGGTAACTGTTCTGATGGAGTGAGCGGCGAAAGTtgccaacaaaacaaaaataagAAGAAAGTCAGAAAGAAAGATGCCATTGAAATAACTGAACAAATGCGAAAGTCTTACAAATGTGAGGAGTGCAATACAGCCTTTTTAGGTTTAGGCCGATACTGGAAACACATGGCAAAAGCACATGGACAACTCTTCACATGCGACATTTGTCAAAAAGAGCTAAAGTCTGAACCTTCATTAAAACAACATAAAATTACTGAACACGCTGAGACaacgaagaaaagaaaaggacTCGGAACCAACTCAGGAATAGTGAGGAAACGAAATTTGCCTCGTACATGTGAAATATGCAATAAGACCTTTCGATTTCACAGCAACTTGGAAAGGCACAAACTGATCCACACAGGCGAGAAGCCGTACCTATGCAACGTTTGCGGCAAAGGCTTTGGGCAAATGTCATATCTGAAAATACATTCTTTCATTCACACCGGTGAGAAGCCCTACAAATGTCAGATgtgtgaaaaaagttttgccgCCCCTGGAACTCTCATGACACACGTTCGCATCCATACTGGCGAGAGACCGCACGTTTGCAAAATATGCGGGAAAGACTTTCCCCAGTCCGGTTATCTATCTGCACATATTCGAACTCACACTGGAGAAAAGCCTGTCGAGTGTAAAGTTTGCCATCGAAGATTCAACCAGAGCGGAAGACTTGTAGTACATATGAGAATACATAGCGGAGAGAAACCGTACTCTTGCAAGGACTGCGGTCGCAGCTTTGCTGTTAAAGGAACGCTCAAGAAACACATCAGGACGCATACGGGGGAACGGCCCTATATCTGCAGTGTTTGCGGACAAGCGTTTGCCCAAAGCGGTACTTTGGCCACTCACATGAAGGTTCACAACCCCAAATAA
- Protein Sequence
- MSLSMNSPYHNICRTCLSDSVTVKPLFSLEEILNQSTTLSNMLMECASVLVIKDDGLPDNICFNCAQELQRSFLFKRLCETSDATLRNRTISMEVQIDEAGSVSNIPPKAEFSVEENELKPQFDSCSEGSSFDGNCSDGVSGESCQQNKNKKKVRKKDAIEITEQMRKSYKCEECNTAFLGLGRYWKHMAKAHGQLFTCDICQKELKSEPSLKQHKITEHAETTKKRKGLGTNSGIVRKRNLPRTCEICNKTFRFHSNLERHKLIHTGEKPYLCNVCGKGFGQMSYLKIHSFIHTGEKPYKCQMCEKSFAAPGTLMTHVRIHTGERPHVCKICGKDFPQSGYLSAHIRTHTGEKPVECKVCHRRFNQSGRLVVHMRIHSGEKPYSCKDCGRSFAVKGTLKKHIRTHTGERPYICSVCGQAFAQSGTLATHMKVHNPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01283651;
- 90% Identity
- -
- 80% Identity
- -