Spec003772.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638203.1:12279417-12288183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.017 1.2 9.9 0.1 1 23 351 373 351 373 0.97 2 12 0.001 0.071 13.7 0.4 2 23 376 398 375 398 0.95 3 12 3.5e-07 2.4e-05 24.7 1.7 2 23 467 488 466 488 0.97 4 12 0.00033 0.023 15.3 0.4 1 23 494 516 494 516 0.97 5 12 9.1e-05 0.0062 17.1 2.0 1 23 522 544 522 544 0.98 6 12 1.2e-05 0.00084 19.8 1.7 1 23 550 572 550 572 0.98 7 12 0.00016 0.011 16.3 0.8 1 23 578 600 578 600 0.98 8 12 1.9e-07 1.3e-05 25.5 1.7 1 23 608 630 608 630 0.98 9 12 0.00051 0.035 14.7 0.2 1 23 636 658 636 658 0.97 10 12 1.6e-05 0.0011 19.4 1.3 1 23 664 686 664 686 0.98 11 12 0.0022 0.15 12.7 0.8 1 23 692 714 692 714 0.97 12 12 0.00011 0.0074 16.8 0.9 1 23 720 742 720 742 0.98
Sequence Information
- Coding Sequence
- ATGGCCGCCTTGGAGGCCACCCGATATAATGAACTTTGCAGACTTTGTGCAGTAAAAACCAGCGGAATGTTAGGAATTCACATATTCCAAAACGAGGGAATTTTGGGggaactaaagaaaaaaatcgaatcttGTCTTCCGATCCAAGTCCACCAAGCCGACGAACTTCCCAAAATGATCTGCGAGTCCTGCCTGTACAAGCTCAACATGTTTTCGGATTTCCGGGAAAGGACAATCCGCACCGAAACGTTACTCATCGATCTTATTAAGGAATTCAATAGCAGCAAACTGCAAAACCAGCCGATTAACGTTATTTCAATGGAACACAACGATTTGATCATGGTTCAACACCAACAACTTTTAGGCAATCACGACATGGCTAACGTCGACGAGATCGATTTACACCAACTAAGCACCAGAGAGCAAATGATTGTTGGCCACGAGATCATTCTAACGCACCAAAATGTCGATATCAACGGTCATCCGTTAGGAAATATCGATCTAAATCATCACGAATTGACGAGTCAGGACATCTCGAATCACAGCCTTCAGACCCAGGATTCCATCTTAGTGGAAACGAGCAGTGCTCATGATATGGAAAATGCCCGCTTCACCAGTGATAATTTGGATTTAATTCAACACCAGCACTTGCTGACCGACCAATTCAGGCTGCAACACGAGCTGCACGTCAGTATGACCGAAGCAAATGCAGTCAATGGAATGACATTAACAGATGGTTTGAACAACTCTGTTGTAGATCGCAAGATGGATTTGGATGGCGGTATCCATCACACAAACACCACCTACCACATCAATGAAGAGAAAAAACACACTTTGGAATACCACAGTTCGCCATCGCCCAACATCGATTTAAGTAAAGTTGTTAAAGATGACTGTTTGAAAGTCGAAGACAGTAACAGCAATAATTCTCTTCTAATTGACGAGCAGTTGAATAAAGTCGCCGGCAGGAGCAAGGAAGTTTACATAATCCAAGCGGATAATAGTAACAACACTGTACAATCCGTGGCCAACATCAATGGTAGAGATTGGTATTATTGTAATATTTGCGGTAAAGCGGACGAAGATGAGGCTAGTTTCGAAACACATTACGAAACGCACTTCCAAAAATGCAACATTTGCTTTGCCGTATTCACCAACAGCGATGTTTTGAACTCCCACAGGAAGGAGGCGCACGGGAGCACAGAAGAAGTAAAGCCCGTAAAAACGAGGTTGAAGAGAGCCACGTTGCCCATTAAGGGTAAGAGCAATAGCGCCGAGAGCAACAGCGAGGACAGTGGCGCCGATTACGTGGACGATGCAGTAGACGATGAAGAAAACGAGGATAGCTTGTTAATCGAAGAAAAATCGAATAACAAACGAAAGATCTGGTCGCCGAAAGTTTGTTCCGAATGTGGTAAATCGtacaaaactaattataaACTTAACGAACACATGAGGAAACATACCGGCGAGAAACCGTACAAATGTAACAGTTGTGAAAAGGAATTCCGGTCGAAAATCGGACTAGCACAACACGCAGCTAAACATACGGGTAAATACGATTATTCTTGCCCGACCTGCGGAAAAGGCTTCCAATGCAAAAGTTATCTTATGGTACATCAAAGGGTGCATTCCGACGTGAAACCGTATCCGTGCACTACGTGCGGACGTAATTTTAAAACGAAACAGTCATTACTCGATCATACCAACAGGCATTTGGGTGTTAAACCGTACATGTGCGAAATTTGTGGTCGAGGTTTTATAACGaaaggattatgcAAAGCTCACCAAAAAGTACACACGGGTTTAGACAACAGAAAATATTCTTGtaaagtttgcaacaaaatgtttgtttcGAAAAGTTACTTGCAGACGCATTTAAGGATTCACACCGGAGAGAAGCCATTTATTTGCGAGGTGTGTGGTAAAGGATTCTTGACCAAGGTGGACCTAAGGATACACACGACCATGCACACTGGTGAAAAGTCCTACGTGTGTGAGATGTGTGGTAAAGCATTTGCTAGGCGAGATGCTTTGAGGTGTCATAGGAGATCACACACTGGCGAACGACCTTACAGTTGTGATTTCTGCGGACAAACTTTCACCCAGTTTACACCTATGGCGATTCATAAGAGGTTGCATACAGGGGAGCGACCTTATTCTTGTGACAGCTGTGAGAAAACGTTTGTTTCAAGATCTACCATGATGGCACATGCTAAAAAGCATTTacgataa
- Protein Sequence
- MAALEATRYNELCRLCAVKTSGMLGIHIFQNEGILGELKKKIESCLPIQVHQADELPKMICESCLYKLNMFSDFRERTIRTETLLIDLIKEFNSSKLQNQPINVISMEHNDLIMVQHQQLLGNHDMANVDEIDLHQLSTREQMIVGHEIILTHQNVDINGHPLGNIDLNHHELTSQDISNHSLQTQDSILVETSSAHDMENARFTSDNLDLIQHQHLLTDQFRLQHELHVSMTEANAVNGMTLTDGLNNSVVDRKMDLDGGIHHTNTTYHINEEKKHTLEYHSSPSPNIDLSKVVKDDCLKVEDSNSNNSLLIDEQLNKVAGRSKEVYIIQADNSNNTVQSVANINGRDWYYCNICGKADEDEASFETHYETHFQKCNICFAVFTNSDVLNSHRKEAHGSTEEVKPVKTRLKRATLPIKGKSNSAESNSEDSGADYVDDAVDDEENEDSLLIEEKSNNKRKIWSPKVCSECGKSYKTNYKLNEHMRKHTGEKPYKCNSCEKEFRSKIGLAQHAAKHTGKYDYSCPTCGKGFQCKSYLMVHQRVHSDVKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYMCEICGRGFITKGLCKAHQKVHTGLDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFICEVCGKGFLTKVDLRIHTTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDFCGQTFTQFTPMAIHKRLHTGERPYSCDSCEKTFVSRSTMMAHAKKHLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -