Spec008146.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizotus pectinicornis
Gene Symbol
-
Assembly
GCA_951805265.1
Location
OX638205.1:5663808-5675628[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.1 6.8 7.5 3.6 1 23 293 315 293 315 0.96
2 13 0.79 54 4.7 0.8 1 22 319 342 319 345 0.90
3 13 4.6e-05 0.0032 18.0 0.9 1 23 389 412 389 412 0.97
4 13 4.6e-06 0.00031 21.1 1.1 1 23 418 440 418 440 0.98
5 13 5.2e-06 0.00036 21.0 2.0 1 23 454 477 454 477 0.96
6 13 1.6e-06 0.00011 22.6 2.9 1 23 483 505 483 505 0.98
7 13 0.0016 0.11 13.1 5.8 1 23 511 534 511 534 0.96
8 13 3.4e-06 0.00023 21.6 0.2 3 23 542 562 542 562 0.99
9 13 5.3e-07 3.6e-05 24.1 1.9 1 23 568 590 568 590 0.99
10 13 1.8e-05 0.0012 19.3 6.7 1 23 596 618 596 618 0.98
11 13 0.28 19 6.1 9.3 1 23 624 646 624 646 0.98
12 13 1.4e-05 0.00094 19.7 0.6 1 23 652 674 652 674 0.98
13 13 5.3e-08 3.6e-06 27.2 0.9 1 23 680 702 680 702 0.99

Sequence Information

Coding Sequence
ATGGAGGTATCACGTTTGATGTGCGATATGGACCTTTGCAGGCTGTGTGGGGAAGAAAATAGCTATGGAAACAACTTGTTCGAAACGGGAGAAAATCAGCAAGATTTAACCGAACTGATCAACAAGTATCTTCCTGTAAAGGTCGAAAACGATAACAAATTTCCACGAAAAATATGTCCCGGCTGCAATATACAACTCGAAGCAACCAAATCTTTCATGGATTTAATAATTCAAGGTCAGGAAAAGCTACAACAAATGTACAAGAGTCAACAAGACAAGTTGTATCGACAAGAAAAGCAGCGAATTCAACTCGAAGAAGCTTTGAGATGCGTCAATCCTAATTCTAGTGTCGACACTTACACCATACAATCGGACGAAACAGGAGAAAAATTCCTTATACAAAttttctCCCAGGGTCCGCTATTTCCCCCCGAACATGAACTGTCTTTGCGTGCTGAAGGCCTTGAAAGACCCAAACGTAAAAGAGGTAGACCCCCGAAACCGCCACCTCCTACAGAGGAACCAACACAAACACCAAATAACGATGATAATAAAACTGAGGATCAAACTGAGAATATCGAAGAAATTTCCGAAGATGGTAAACGTAAAAGACGCATTAAGGTCCCTACACGTTATTTAGGAGCGCTACAAGGCAAAGAACTTGATAAGGCTTTCAAACAAGAAGGCGTAATTGATGAAGAATCACTTTCGGAAGAGGGCGAAACGGAAGTGGATGAAAGTGAAACTACTAAAAGGGTAGAGGAAGTTATTGGCAGGTTGGAAACTGAAAATGGAGAAGATTTAGGACAGCCAGTTGTAGTCAATAGAGCTTTGCACAGGTCcagaattaaaaGAACATCTAAGAAACGCAGGCGGTATCAATGTGAGATTTGTGGTCGtgaatttttgcaccatggaCGATACGAACTTCACAAGAAAATGCATGACGTTGAGTATAATTGTACGCATGAAGATTGCACCTTCCAGACTGATCAGCGAGCGTTGTTGGAGCAGCATCAGCAAGAAAGTGGGCATTCCACAATTACAGCTACGGAAAAAATCGATAAATACGGTCTTCTCCAACTACCGACAACTCAACTGCAAGCTTCTCCCGAAAATGCCGAGGTCGAATCTGAAGACGCCGAGTAcactaacaaaaataaattccgtTGTGAAAGTTGCAACAAAGATTTCACTAATAAGCAAAATTACGAGGTTCACGTCAAGGTCGTTCATGAGGGTGAACGGCCATTCGTTTGTACTTGGTGCAACAAAAGTTTTCCGTACGCCTATACTTTAAGACTTCATCAACGTCAACACGACAGAAAGTGTAAAAGCGACGAAGATGCAACTGCCCAATACCGATGTCCATCTTGCCCTAAAACGTTTCGTCATCCGAGCAGTTTGCAGTATCATAGAGATTCGGAACACGCAAACGGTCGCagATTTGTGTGCAACAAATGCGACAAGCCTTTCAAGCATCGTCAGCTCCTACAACGCCACCAGCTCGTCCATTCCGACGAGCGCCCCCATATCTGCCACCAATGTTCCTCAGCATTCAAAACGCGTGCCAACCTCCTCCACCACACCCGGACCGTTCACGCGTGTCAGCGCAGTCATTGGTGTCCACAGTGCGGCAAAGCTTTCGTAAACCAAACCGCTCTAAAACTCCACCAACGTTGGCATTCGGGCGTTCGTCCTTACCAATGCGAGTTCTGTCAGAAAACCTTTTCGCAAAAGGGCAATTTATCGGAACATCGCCGAATTCACACTGGAGAAAAGCCGTATCACTGCGACCATTGCGGTCGCGCCTTCACCACCTCGTCACAATTCAGGTTGCATCGCAAACGTCATCTGAACGAACGACCTCATCGATGCGAGTATTGTCctaaaagttttcttcataAGGACACTCTGAAGTGTCATACCAGGAGACATTTTGATGTTCGACCGTATCGATGCCAGTATTGTCAAAAGACCTTCCCGGAAGCTTGGGCGTTGAAGAAACACGAAAGGTTGCACACTGGGGAGAAACCGTACAAATGCGAGCTTTGTTCCAAGGCTTTCGCTGACAGCTCGAATTTGATCAAACATCGCAGGACCCATCGGAATGCCAAATCAGCAAaaaaaccAATGCTCTACGTCACCTATCAAGAGGATGAAGATGATTTCAACAATGCAATTGTGCACTGCATCGATTCCCAAAACGTATTGCTGGAATCTGGAGAAATCGTTAACGTCGCCGAAAACGTTATGCCAGCGGTGCAGTTGCAGCAGTTGGTGGATCAAGAAGGCAACCCTATAAGTTTCACCACGCAAGATGGCCAACAAGTTAAAGTTGTGACGAGTACAGAAAATGGTGAAGAAAATATTCAAGGACTTTTGCCCGATGGCACTTTAGTTCCGATCAATTTGACGTCTGTAGGTGAAAAAGGAGGAAAGTCAATGATGCAAATTGACGATTCCATGCAGaaattgtgCGATGTGCCTCTGGATGGCCAACTACTAGAGAGTGGTATCCATTTCTTATCAGAGGAGGATCCAAAAACCCAGAACAACATTCAATTTATCACGGAAGACAACCAAAACATGTGCTTAGTAACAACGTACAATATACAAGACTCCATGAACCCCGACTATTTGGTTggaattaattag
Protein Sequence
MEVSRLMCDMDLCRLCGEENSYGNNLFETGENQQDLTELINKYLPVKVENDNKFPRKICPGCNIQLEATKSFMDLIIQGQEKLQQMYKSQQDKLYRQEKQRIQLEEALRCVNPNSSVDTYTIQSDETGEKFLIQIFSQGPLFPPEHELSLRAEGLERPKRKRGRPPKPPPPTEEPTQTPNNDDNKTEDQTENIEEISEDGKRKRRIKVPTRYLGALQGKELDKAFKQEGVIDEESLSEEGETEVDESETTKRVEEVIGRLETENGEDLGQPVVVNRALHRSRIKRTSKKRRRYQCEICGREFLHHGRYELHKKMHDVEYNCTHEDCTFQTDQRALLEQHQQESGHSTITATEKIDKYGLLQLPTTQLQASPENAEVESEDAEYTNKNKFRCESCNKDFTNKQNYEVHVKVVHEGERPFVCTWCNKSFPYAYTLRLHQRQHDRKCKSDEDATAQYRCPSCPKTFRHPSSLQYHRDSEHANGRRFVCNKCDKPFKHRQLLQRHQLVHSDERPHICHQCSSAFKTRANLLHHTRTVHACQRSHWCPQCGKAFVNQTALKLHQRWHSGVRPYQCEFCQKTFSQKGNLSEHRRIHTGEKPYHCDHCGRAFTTSSQFRLHRKRHLNERPHRCEYCPKSFLHKDTLKCHTRRHFDVRPYRCQYCQKTFPEAWALKKHERLHTGEKPYKCELCSKAFADSSNLIKHRRTHRNAKSAKKPMLYVTYQEDEDDFNNAIVHCIDSQNVLLESGEIVNVAENVMPAVQLQQLVDQEGNPISFTTQDGQQVKVVTSTENGEENIQGLLPDGTLVPINLTSVGEKGGKSMMQIDDSMQKLCDVPLDGQLLESGIHFLSEEDPKTQNNIQFITEDNQNMCLVTTYNIQDSMNPDYLVGIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01283629;
90% Identity
iTF_01283629;
80% Identity
-