Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: SCRT1
Assembly: GCA_951805265.1
Location: OX638203.1:21376935-21380275[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00024 0.017 15.7 0.1 1 23 305 327 305 327 0.95

2 12 1.6e-05 0.0011 19.5 1.5 1 23 335 357 335 357 0.99

3 12 6.8e-06 0.00046 20.6 0.6 2 23 365 386 364 386 0.97

4 12 5e-06 0.00034 21.0 1.3 1 23 392 414 392 414 0.98

5 12 0.00012 0.0079 16.7 1.8 1 23 421 443 421 443 0.99

6 12 2.6e-05 0.0018 18.8 2.3 1 23 449 471 449 471 0.96

7 12 7.8e-06 0.00053 20.4 0.1 1 23 477 499 477 499 0.98

8 12 3.4e-07 2.3e-05 24.7 0.8 1 23 505 528 505 528 0.96

9 12 1.5e-05 0.001 19.5 0.4 1 23 534 557 534 557 0.96

10 12 2.9e-06 0.0002 21.8 2.6 1 23 563 585 563 585 0.99

11 12 0.00012 0.0083 16.7 0.4 1 23 591 613 591 613 0.94

12 12 0.057 3.9 8.3 0.1 1 23 619 643 619 643 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00024	0.017	15.7	0.1	1	23	305	327	305	327	0.95
2	12	1.6e-05	0.0011	19.5	1.5	1	23	335	357	335	357	0.99
3	12	6.8e-06	0.00046	20.6	0.6	2	23	365	386	364	386	0.97
4	12	5e-06	0.00034	21.0	1.3	1	23	392	414	392	414	0.98
5	12	0.00012	0.0079	16.7	1.8	1	23	421	443	421	443	0.99
6	12	2.6e-05	0.0018	18.8	2.3	1	23	449	471	449	471	0.96
7	12	7.8e-06	0.00053	20.4	0.1	1	23	477	499	477	499	0.98
8	12	3.4e-07	2.3e-05	24.7	0.8	1	23	505	528	505	528	0.96
9	12	1.5e-05	0.001	19.5	0.4	1	23	534	557	534	557	0.96
10	12	2.9e-06	0.0002	21.8	2.6	1	23	563	585	563	585	0.99
11	12	0.00012	0.0083	16.7	0.4	1	23	591	613	591	613	0.94
12	12	0.057	3.9	8.3	0.1	1	23	619	643	619	643	0.92

Sequence Information

Coding Sequence: ATGTCGGCGGCCAGCACCCAGTGCCTGATTTGCAATGGAAGTTGCTCCTCCAGCCGCAACTCCCTTCAAATCTTCAACAAAGACGCCAAAACTTCCTCGGAAACGCCGCTAGTGCAGGCAATTTCCAAATTCCTCGACAAGAAACTGACAGAAGACTCCATGCATTCCTCAGTGATATGCAAGAAATGTTTCAAACTTGTGGACGAGGCCGACGAACTTGAGCAGCGGTTGAAGGAGGTGAAAGCGGAACTCGCCAACAATTATGCCACCTCGAAAACGCATCATCAAAGTTGTGACAACGAGGACGAGGGGGAACAAAGCGAAGTTGAAGAGAAACCGCTGGCCGACGCCAATAAAGAGAACGAGTTGCCAAGGAAAATCCTCGATATTCCTTCATCAGACGACGATATGACTCAAGTTGATAAAGGACAGCTGCAAACCATTGAGGATATTGAGATGGAGCTAGAAAAAATGCACGGCGGCATTGAACACGTTGAATCCGTCAAAGTGATCACCGAAGGTGATGAAGAGAGTAGTTCTAGTCAGGTGTTCCACGCCCTCACGGCCGGAGGGGAGGTCATCGATTCGGGGGCCGTTGAACATTCGTCGGACTCCGATTATGAGCCCCCCAGCAACCCCGGGTTGGCCACTAAGAACATAACAGAGATCAAAATCAAGACTGAGCCGTCCTCCAGCGACCTAAGTTCCAATGAAAAACCGAACATCCTGAAAAAGCGCTCGAGTTCCGTTCCCGTTCTCGACGTCAAAATCAAAGAGGAGGTGATGCTGCAACCTCTAGTGGCCCGCGAAGACTCGGTGTTCTCCTGCTTACTGTGCCAGGGCGACGACGCCATCGCcggcgacgtccgcctcatcACTTCCCACATGAAGGCCGTCCACGACGTCCGGTTGTACATCTGCGACGTTTGCGGGCAAGATTTTCGCAAACGCAACGAACTTTCCGCCCATCTCGATGAGCACGTTGCCGCCGAAGAGGGCGATTTCCAATGCGAAGTGTGCAACCGCATCTTTAGCAATTTGCGACTTTTCCGCATCCACAGACGCATGCACTATCCCCAAAACAAGGCGTGGACGTGCGAAACTTGCGGCAAAAAATACagcagtaaaaatttgttggaggAACACCTCAATACGCACACCGGTATCAGGCCGTACGTTTGCCAACAATGCGGTAAAGATTTCGCTTCAAAATACACTTTTAAGGCGCACGAAAAAACGCACGAAGCTAGACCGAGGCCGTACAGTTGCACTCAATGCTCAAAATCTTTTCTTAGTCAGCAAAACTTGATACAGCACGAGAGAACTCACAATGGCGTTAAAGAGTTCAGTTGTCATTTATGCGGCAAACGTTTCGGGTCTTCGCATAATTTGGAGGTTCATTCGATTGTTCATACCGGCTACAAACCTTTTGTTTGCGAGGTATGCAACAAAGCTTTTGCGCGAAAAGCCGAAGTCCGCGACCACGAACGCACCCACACCGGAGAGAGACCGTATCAATGCGAAATGTGTGGGGCGACATTTTCTCAAAGGTCCAATCTTCAGTCCCACAAACGGGCCACGCATTTAGACGATAAACGTTATGTCTGCATGGATTGCGGGAAAGGTTTTAAACGACGGCGATTGCTCGATTATCACATGAAAGCGGCGCATACCGGTGAACGGCCCTTTAAATGCAACATTTGCGACGCCACTTTCGTTTATCCGGAACATTTCAAAAAGCACAGGCGGATTCATACGGGAGAAAAACCCTTTTTGTGCGAAGTTTGCGGCAAGGCGTTCAACAGTAGAGATAATCGAAACGCGCATCGTTTCGTCCATTCTGACAAGAAACCTTACGAATGTCTGGTTTGCGCCGCTGGTTTCATGAGGAAACCCCTTCTTTACCAACACATGCAATCGCAAGGTCACTTGAACGACACTATAGTTGTGAACCAACCACGCTTGACTACTGATGATGACCAACTGGTTACTGTTAATGCTCGAGGCGAGATGGAAATTGTCGACCAGATCGGCCTGACTGATTCGGTAGACGGTAGCGCGTCGGTGGTTGAAGATTCCAAATTGTACATTTCTGAACATATTTTGGAATCGCCAACTGATGAGAATCAGGAAGATGACGGTTTAGAAACCGTCGATCACATTATCATTGACGGACAACACATACGTTTCCAGAACGAAGATGATGAAATGGATACGATAACTAGCGAAACTTTGGCAGAAAGCGAAACCCAGATCATCGAAACGCCCGACGGACCGGTGCAACTGGTGCGGGTTCGCATCCCTAACGAACAAGGGGAAGAAGAGGAGGCCTGGATCAAGATAGTTCCGGAATAA
Protein Sequence: MSAASTQCLICNGSCSSSRNSLQIFNKDAKTSSETPLVQAISKFLDKKLTEDSMHSSVICKKCFKLVDEADELEQRLKEVKAELANNYATSKTHHQSCDNEDEGEQSEVEEKPLADANKENELPRKILDIPSSDDDMTQVDKGQLQTIEDIEMELEKMHGGIEHVESVKVITEGDEESSSSQVFHALTAGGEVIDSGAVEHSSDSDYEPPSNPGLATKNITEIKIKTEPSSSDLSSNEKPNILKKRSSSVPVLDVKIKEEVMLQPLVAREDSVFSCLLCQGDDAIAGDVRLITSHMKAVHDVRLYICDVCGQDFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWTCETCGKKYSSKNLLEEHLNTHTGIRPYVCQQCGKDFASKYTFKAHEKTHEARPRPYSCTQCSKSFLSQQNLIQHERTHNGVKEFSCHLCGKRFGSSHNLEVHSIVHTGYKPFVCEVCNKAFARKAEVRDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHLDDKRYVCMDCGKGFKRRRLLDYHMKAAHTGERPFKCNICDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCAAGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTTDDDQLVTVNARGEMEIVDQIGLTDSVDGSASVVEDSKLYISEHILESPTDENQEDDGLETVDHIIIDGQHIRFQNEDDEMDTITSETLAESETQIIETPDGPVQLVRVRIPNEQGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01283626;
90% Identity: iTF_01283626;
80% Identity: -