Spec011940.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638207.1:4328665-4331081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00013 0.009 16.6 0.5 2 23 176 197 175 197 0.97 2 15 0.001 0.07 13.8 0.2 3 23 202 222 201 222 0.97 3 15 0.00017 0.012 16.2 2.7 1 23 228 250 228 250 0.98 4 15 0.0065 0.45 11.2 2.6 1 20 256 275 256 277 0.88 5 15 6.4e-06 0.00043 20.7 0.8 3 23 293 313 291 313 0.98 6 15 0.0011 0.073 13.7 2.2 1 23 319 342 319 342 0.97 7 15 3.4e-07 2.3e-05 24.7 1.5 1 23 381 403 381 403 0.98 8 15 0.0031 0.21 12.2 3.6 3 23 411 432 409 432 0.97 9 15 1.8e-05 0.0012 19.3 1.7 1 23 469 491 469 491 0.98 10 15 4.7e-05 0.0032 18.0 0.6 1 23 497 519 497 519 0.97 11 15 0.00054 0.037 14.6 2.5 1 23 525 547 525 547 0.97 12 15 3.3e-05 0.0022 18.5 0.3 2 23 555 576 554 576 0.97 13 15 1.1e-05 0.00076 19.9 3.2 1 23 580 602 580 602 0.95 14 15 0.003 0.2 12.3 2.4 1 23 608 630 608 630 0.97 15 15 9.2e-05 0.0063 17.0 3.6 1 23 636 658 636 659 0.96
Sequence Information
- Coding Sequence
- ATGGAGACGGTGGTCACTCAATGTTGTCGGGcctgtttgaaaatttccgaTATCCCGGTTGACATGTTTCGACTCAAGTATGGAGACACGGCTTTGTCAGAAATGTTCAGAACTTGCACGTCGGTTCAGCTTGAAACTACCTCGTCTCTGACCACCTACATTTGCCAGAATTGCATCAAGGATTTGGTGACCAGCTACACCTTCATCAAAAAATGCCAGTCGAcggatttaaaattaaaaagccaGGATCTGCCTGTGATCCCCACCAATTCCCTCGTCGAGTTACAGGAAAATGGGGGACATAAACTTGGGAGGACTAGTGTAGAGAGCGTAAAAAGTGAGCCGGCTGAAATTGAGACTAGTTTGGGGGACGTTTTGagtaacaaaaaagaaattgaaggtGATTCGAGCGACATAGAGGACGTTAAGTCAAACATTTCTTGTGGAGTTGATGgtAATTTTGAAACGTCTGGCAGTTGTTTGGAGAAATTGAATGAAGTCACAGCGCGTTCCGTGGACGCTTTAACGTGTCGCGAGtgtgatattaaattttccagtCAATTGAGCTGGAGGCTGCATATGCGAGTTCATGGTCTGCGCGCTTGTCAGTTTTGCTCTAAATCATTCCAGCAGGAAGCCGCATTGGAAGCTCATCGTTTGAGCCACCGGGTCGcgaaaccgtacatttgcagTATCTGCAATCAGTctttcaatcaaaaaatttacctaaatTGTCACATGCGCGTGCACACTCAAACGACACAGTATGTCTGTTCAGATTGCGGCAAATCCTTCAAATGGTTGTCATCGTACAAATACCATTCGTGTACCGACGAAAACTCTTCGAGAGTTTCGAATTCTGGCAGAATTTACGGTTGCAAAATTTGCGACAAAAGTTTCATGCAACCCGCTCATTGGGCGAGTCACCAAAGAACTCACACGGGCCATCGTCCGTATAAATGTAAATTATGCGATAACGCGTTCATGCATCTCAGCTCGATTCGAAATCACATGAGTCGCGAACACAAAATCGAGTATTCGAAAAGTAACGTCGAGTACGTTCAAGACAAAAACTCCAACTCTgaagatattcaaattttggaacTTAATTTGAAGGCGCCAGGCACTGTCGCCAGACCTTTCGTTTGCGACATTTGCGGTAAATCCTTCACCCAGCGCGCTCATTGGTACACGCATCAAAGGATCCACACCGGCCACTGTCCCTACTGGTGCAAATTATGCAAGACTTCTTATCGACATCTCAGTACGGTTAAAACGCACATGAAACGAGACCATCAACAGGAGTTTTCGAGGGAAAATTTAGAGTTCCTCAAAGGTCCGCAAATGGAGAAGGAGGAGAAAACGCAGGTTGGGAAACCTGAAGCGGTCGTGAAGAAAACTAGTTTCCAATGCGAGATTTGCAGCGAAGTCTTCAAAGGGAGGTCGTCATTGCGTCATCACACGATGTTGCATACCGGGGAGAGGCGGCACTATTGCGAAGTTTGCGGCAGAGGCTTTATCCAAAGAAATGCGTTGGGAGAACACATGAAGAAGCACACGGGTGAAACTCCGTACGTTTGCGAGCACTGCAACAAACGGTTTCGGGCCTTAACCAGCTACAAAGAGCATTTAACGATACATTTCCCCCCTGAAAATCCGGTTCCGTGCGAGAAGTGCGGTAAGGTGTTGAGGTCGAAGCAGGCGTGGAAACGGCACCAATTGACCCATAACAAGAAATATTTGTGCAATGAGTGCGGCAAATGTTTTACGAACAAAACGAAATTGACCGAGCACAGTAACGTGCATAAAGGAATCAAGCCTTATCATTGCAATATTTGCAACAAGGAGTTTTTCCGTAGAGAAGTATGGAAACTTCACGTGATGCGACACGAAAACGTCAAGCCTCACCAATGCGGCAACTGCGACAAAGCTTTCGTGATGCGGTCGAAACTTTCAGAACATATCAAGAAGCATCACGGCGATGGcAGGGCGCAAGCGGCGTGTGATCGGAGACCATCTTTGGTGGACCTGTGA
- Protein Sequence
- METVVTQCCRACLKISDIPVDMFRLKYGDTALSEMFRTCTSVQLETTSSLTTYICQNCIKDLVTSYTFIKKCQSTDLKLKSQDLPVIPTNSLVELQENGGHKLGRTSVESVKSEPAEIETSLGDVLSNKKEIEGDSSDIEDVKSNISCGVDGNFETSGSCLEKLNEVTARSVDALTCRECDIKFSSQLSWRLHMRVHGLRACQFCSKSFQQEAALEAHRLSHRVAKPYICSICNQSFNQKIYLNCHMRVHTQTTQYVCSDCGKSFKWLSSYKYHSCTDENSSRVSNSGRIYGCKICDKSFMQPAHWASHQRTHTGHRPYKCKLCDNAFMHLSSIRNHMSREHKIEYSKSNVEYVQDKNSNSEDIQILELNLKAPGTVARPFVCDICGKSFTQRAHWYTHQRIHTGHCPYWCKLCKTSYRHLSTVKTHMKRDHQQEFSRENLEFLKGPQMEKEEKTQVGKPEAVVKKTSFQCEICSEVFKGRSSLRHHTMLHTGERRHYCEVCGRGFIQRNALGEHMKKHTGETPYVCEHCNKRFRALTSYKEHLTIHFPPENPVPCEKCGKVLRSKQAWKRHQLTHNKKYLCNECGKCFTNKTKLTEHSNVHKGIKPYHCNICNKEFFRREVWKLHVMRHENVKPHQCGNCDKAFVMRSKLSEHIKKHHGDGRAQAACDRRPSLVDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -