Spec004006.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- ZEB2
- Assembly
- GCA_951805265.1
- Location
- OX638203.1:15108918-15113246[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.53 36 5.2 1.9 1 21 58 78 58 79 0.92 2 23 0.86 58 4.6 1.0 2 23 85 106 85 107 0.92 3 23 0.83 57 4.6 1.1 2 23 113 134 112 134 0.92 4 23 2.9 2e+02 2.9 0.7 3 23 141 160 139 160 0.78 5 23 0.0011 0.073 13.7 6.2 2 23 168 189 166 189 0.92 6 23 4.8e-06 0.00033 21.1 1.8 1 23 195 217 195 217 0.97 7 23 0.0027 0.19 12.4 3.0 1 23 226 248 226 249 0.96 8 23 0.00048 0.033 14.8 0.9 3 23 256 276 254 276 0.95 9 23 4.5e-06 0.00031 21.2 0.1 3 23 284 304 282 304 0.97 10 23 4.1e-06 0.00028 21.3 0.5 1 23 310 333 310 333 0.95 11 23 4.5e-05 0.003 18.0 2.6 1 23 339 361 339 361 0.98 12 23 0.0001 0.007 16.9 2.4 1 23 367 390 367 390 0.98 13 23 0.003 0.21 12.3 8.0 1 23 396 418 396 418 0.99 14 23 0.45 30 5.5 0.1 2 23 422 442 421 443 0.89 15 23 0.046 3.2 8.5 0.9 1 23 449 472 449 472 0.93 16 23 4.3e-07 2.9e-05 24.4 0.4 1 23 493 516 493 516 0.96 17 23 0.22 15 6.4 3.5 1 23 524 547 524 547 0.98 18 23 0.00048 0.033 14.8 0.2 1 23 556 579 556 579 0.96 19 23 0.00062 0.042 14.4 4.9 1 23 586 609 586 609 0.96 20 23 0.0012 0.081 13.6 0.3 3 23 619 639 617 639 0.95 21 23 4.3e-06 0.00029 21.2 2.9 1 23 645 667 645 667 0.96 22 23 0.028 1.9 9.2 9.0 1 23 673 696 673 696 0.95 23 23 3e-05 0.002 18.6 1.8 1 23 702 724 702 724 0.98
Sequence Information
- Coding Sequence
- ATGATTAGTTTTGTGAGCAATTCGGGAACTAACGTGAAGAAAGATCCTCTTTCATTACTAGTTTCGATTGTTTGCTTTACTTCCGATAACGCGCCCATTTGTTTCAGGATCAAAACCGAGGAAATCAAAATAGAAGTTGAACAAGTAGATGATTCTGTTCACAACAAAAGCCACATGTGTAGTAGATGCCGTGACTTTTTCCCTAGTAAAATGTTGTTGAAGAGACACCGTCTCAGATGCAAGAGACGTCGCACATGTAAAACGTGTTTGGGATCCTTTGTTACCATCCGTGCTTTGCGAGAACATCGCGTAGAACATCATGGGTTACCAACTCTCAGTTGCCACCAATGCCAACTTACCTTTTTGGACCCCGATGAACGTTTAAAACACGAAACCATGCATGCTAGCGGAAAACAATATTGCCGTTTATGCAAAAGGTTCGTTAAGCCATTTCTTTGGGAAGCGCATCAAATGAAGCACGAGAGTCCAGATGGAAAATGTCATTGCTCCGATTGTGGAAAAACTTTTGAGGTGTTGTCGCATTTTGTTACTCACCAACAACTTCATCTGGAACCTCCGAGGTTTCCTTGTGATGTTTGTAAAAAGAGTTACAGCACGAACTCAAGCATGAAACGGCATCGACTGAGTCACGAAGACGGGTACCAGAGGCCGGTGTACACTTGCGATTTTTGTCAAAAGACTTTTCAAACTGTCAGCAGCAGGGGTAATCATATTAGAGTGCATCATGAAGGCAAGAAACATCTCTGTGAGACTTGTGGAAAAGTGTTGACGTCAGCTGCTAGCTTGAAAGACCATACATTTACACATAGCGGggagaagaaaattatttgcaccGTTTGCGGAATTGCATTTATTTCAACGAAATATTTAACTGCCCATATGAGGACTCATACTAAGGAGAAACCTTTCGCATGCGAGTATTGCGATAAGAAGTTCACTCAGAAAAGTTCAGTAACGATTCATGTTAGAGCCCTCCATACTGGTGAAAAACCGTATTCATGCGTTGTTTGTTCGAGGAAGTTTATAACTAAAACAAACCTCAAACTCCACAAGAAAACACACCAAGTGAGACCGAGTTTTACTTGCCAGCTTTGCAAACGTATTTATAAAACGTCCAAATCTCTCCAAGAACATGAAAGAACAAACCATCTACAAACCAAAGAGTTTAAATGCTGCATTTGCAATTGTAACTTTAAACTGCGGAAGTCACTCAAGGCCCATTTGAGAAGGCACAAAAACGTTGTTTGTCTGGATTGCGGGGCGACTTTCAACGAAATCACTATAGTACAACATCAACTAGTTCATCATAACAGCAGCCGTGACTACAAATGTTCGAGGTGCGACGCGGTCTATGATAGTTATAGGTTAATGAGGAATCACAAGGTTAAAGTTCATTCGCCACAGTTTGAAATCGTAACAAGTAAAGTTCAAGTTACTGGTAAGAACGACTCGCCGTATCAATGCCCCCTGTGCGGAAAGACGTTCACTCGCAAGGGCGGGGTTAAGAGGCATCTTGATAGCATGCACAGCCATTCAGAAGATAAACGTTTCACTTGCAAAATTTGCTTGCATCAAACTCGAACAGTACAGACTTTAGTACTtcatcaaagaaaaaaacacaacCCCAATCGCGCATCGTCGGTGTTCCCATGCGATCAGTGCCCGAGAACCTATCAAAGTCGTTCGGCTTTGCTTATTCACGTGAAGAACAATCATTCTCTGAAAGTGGCGCAATTTACTTGCaaatattgcaataaaaacttcaaaagGTTGCAGTTTATGCAAAAACATACGAAGGAGATGCACGAGGATGTAATTGGAAATCGACATTTGTGCGAGGTTTGTGGTAAAGAACTTCGAAGTGTTACTAGTTTGAGGAATCACATTGCAATCCACACGGGAGAGAAACCGTATCTTTGTTCACATTGCGGTAGGACTTTTCGGCGAAAGTCCGTGCTCAAAACGCATTTGTTGGTACATACGGGGGAGAAGCCACATGTTTGCGAATTGTGTCATAAGAAGTTTGCCCATCTTGCGACGTTGAAGCAGCATCATCAACATGTGCATACTAAAGAAAGATCTTTCCAATGCAATATATGTCTGAAAGCGTTTTATAAAAAGGCCCTGCTTCGTCGCCACCGCGAAAAACATGTTGAAGAAAGTTCCTAG
- Protein Sequence
- MISFVSNSGTNVKKDPLSLLVSIVCFTSDNAPICFRIKTEEIKIEVEQVDDSVHNKSHMCSRCRDFFPSKMLLKRHRLRCKRRRTCKTCLGSFVTIRALREHRVEHHGLPTLSCHQCQLTFLDPDERLKHETMHASGKQYCRLCKRFVKPFLWEAHQMKHESPDGKCHCSDCGKTFEVLSHFVTHQQLHLEPPRFPCDVCKKSYSTNSSMKRHRLSHEDGYQRPVYTCDFCQKTFQTVSSRGNHIRVHHEGKKHLCETCGKVLTSAASLKDHTFTHSGEKKIICTVCGIAFISTKYLTAHMRTHTKEKPFACEYCDKKFTQKSSVTIHVRALHTGEKPYSCVVCSRKFITKTNLKLHKKTHQVRPSFTCQLCKRIYKTSKSLQEHERTNHLQTKEFKCCICNCNFKLRKSLKAHLRRHKNVVCLDCGATFNEITIVQHQLVHHNSSRDYKCSRCDAVYDSYRLMRNHKVKVHSPQFEIVTSKVQVTGKNDSPYQCPLCGKTFTRKGGVKRHLDSMHSHSEDKRFTCKICLHQTRTVQTLVLHQRKKHNPNRASSVFPCDQCPRTYQSRSALLIHVKNNHSLKVAQFTCKYCNKNFKRLQFMQKHTKEMHEDVIGNRHLCEVCGKELRSVTSLRNHIAIHTGEKPYLCSHCGRTFRRKSVLKTHLLVHTGEKPHVCELCHKKFAHLATLKQHHQHVHTKERSFQCNICLKAFYKKALLRRHREKHVEESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -