Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: -
Assembly: GCA_951805265.1
Location: OX638206.1:553668-555364[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.7e-08 2.5e-06 27.7 0.6 1 23 213 235 213 235 0.98

2 12 8.1e-07 5.5e-05 23.5 7.4 1 23 241 263 241 263 0.98

3 12 1.7e-05 0.0011 19.4 0.4 1 23 269 291 269 291 0.99

4 12 0.0002 0.014 16.0 1.4 3 23 299 319 297 319 0.94

5 12 0.00084 0.057 14.0 1.3 1 23 325 347 325 347 0.97

6 12 1.1e-07 7.6e-06 26.2 3.4 2 23 354 375 353 375 0.97

7 12 2.3e-06 0.00015 22.1 1.7 1 23 380 402 380 402 0.98

8 12 7.8e-06 0.00053 20.4 2.2 1 23 408 430 408 430 0.99

9 12 3.7e-05 0.0025 18.3 1.2 1 23 435 457 435 457 0.94

10 12 4.4e-07 3e-05 24.3 1.7 1 23 463 485 463 485 0.98

11 12 6.3e-09 4.3e-07 30.2 1.3 1 23 491 513 491 513 0.98

12 12 7.1e-08 4.8e-06 26.8 0.8 1 23 519 541 519 541 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.7e-08	2.5e-06	27.7	0.6	1	23	213	235	213	235	0.98
2	12	8.1e-07	5.5e-05	23.5	7.4	1	23	241	263	241	263	0.98
3	12	1.7e-05	0.0011	19.4	0.4	1	23	269	291	269	291	0.99
4	12	0.0002	0.014	16.0	1.4	3	23	299	319	297	319	0.94
5	12	0.00084	0.057	14.0	1.3	1	23	325	347	325	347	0.97
6	12	1.1e-07	7.6e-06	26.2	3.4	2	23	354	375	353	375	0.97
7	12	2.3e-06	0.00015	22.1	1.7	1	23	380	402	380	402	0.98
8	12	7.8e-06	0.00053	20.4	2.2	1	23	408	430	408	430	0.99
9	12	3.7e-05	0.0025	18.3	1.2	1	23	435	457	435	457	0.94
10	12	4.4e-07	3e-05	24.3	1.7	1	23	463	485	463	485	0.98
11	12	6.3e-09	4.3e-07	30.2	1.3	1	23	491	513	491	513	0.98
12	12	7.1e-08	4.8e-06	26.8	0.8	1	23	519	541	519	541	0.99

Sequence Information

Coding Sequence: atgaacACCTTGTTCCACATAACAGATTGTTGTCGCACATGTTTACGAATTGATAGCGCCCTAACCCCCATCAATTCTCTTGACAGTGACAACATCAAACTAAGTGACAAACTAATCGCCTGCATTGCCGAAGTGACATGGGTCAAGAACGGGTGTTCAACGTTGATGTGCTCCAACTGCACAGAAAAGTTGCGTATAGCGTACGATTTTCGAGTGCTGTGCATGCAAACGGAGAACGCAACTCATCAGTATTTCGTTCAAGAAAAGCCGATGCCTTCATATACGAATTTGGATGACTACCAATTGACCACGATTCAAATGCAAAGTAACGTTGAAACGGTGAAAATTAACGTCCAACCCAGccctgattatttgaatttgaagcATTTTCTGGAGCAAGAGGAGCTGACAAAAGCGCAAAAATACTTGGAAACGTCCAGGAGTACGTCACCAGATTCGGTCGCCACAACTGGTTACGCGCGATACGAAAAAGTTCCGAAAAAACCGGTAATCCCAACTAGATCTGTAAAGACTCAAACACAACCTTTGCCTCAGTACCCGAATTTGACTCCGGCGGCGGCGAGACTGGAGGCCCAACAGAACAAAACCACGATCATTGTTGAGGACCCCTACAGATTCTCTTGCGAAATTTGCGGTAAAAAGTACGCGAAAAACGCAAATCTAAAAATCCACATGAGGACTCACACGGGAGAAAAACCGTTTGAATGTAAATATTGCGACAAGAAATTCTACCATTCCTCTCATTTAAGGGAGCACATACGCCGGCATACTGGCGAAAAACCGTTTCAATGCAACGTTTGCTTGAAACGTTTCACAATCACTGCCGAATTGACAGTCCACATGAGGATTCATACCGGGGAAAAGCCGTACGGTTGCAATTGTTGCGATAAAAGGTACATTAAAGCGAGCGATTTACAGGTGCACATGCGGTCTCACACGGGAGAAAAACCGTTTGCTTGCAGCTATTGCGAGAAAAAATTCACTTCTGGCTATATACTCAATTCGCATTTAAAAACTCACACTGGAGACCGACCATGGCAGTGCAACGTTTGCAGTAAAACTTTCACTCAATCATCTCACTTGACTGTTCACATGAAGAAGCATACTGGCGAAAAGTTTTCCTGTAAAGTTTGCAGTCAAGAGTTCGCGCATTCTTCTCAATTAACCGTGCACATGAGGGAGCACACGGGACGACAGCCTTATAAATGTACCGTTTGCgagaaaatttgtaactacGCTTCTGAGTTGCAAACTCACATGATGAAACATACCGGAGAAAAATTCAGTTGTATCACTTGCGATAAGAAATTCACGACTGCCGCGTATTTGCAGGAGCACACTAGGACGCATACGGGGGAGAATCTCTTTAATTGCACGTTGTGCGAACGCACGTTCACCAGGGCGACTTATTTGGAGAAGCATATCCGCACGCACACCGGGGAAAGACCTTTTTCGTGCGAGGTATGCGGCAAAAAATTCACGCAGTCCTCATCTCTGAATGTTCACATGAGGAAACATACAGGAGAGAAACCTTATACTTGTAATATCTGCAATAGGAGCTTTGCGACGTCTTCTTATTTAGCTGTGCATCTAAGGAAGCATAAAAAGTACATCAGTAATGTGTAA
Protein Sequence: MNTLFHITDCCRTCLRIDSALTPINSLDSDNIKLSDKLIACIAEVTWVKNGCSTLMCSNCTEKLRIAYDFRVLCMQTENATHQYFVQEKPMPSYTNLDDYQLTTIQMQSNVETVKINVQPSPDYLNLKHFLEQEELTKAQKYLETSRSTSPDSVATTGYARYEKVPKKPVIPTRSVKTQTQPLPQYPNLTPAAARLEAQQNKTTIIVEDPYRFSCEICGKKYAKNANLKIHMRTHTGEKPFECKYCDKKFYHSSHLREHIRRHTGEKPFQCNVCLKRFTITAELTVHMRIHTGEKPYGCNCCDKRYIKASDLQVHMRSHTGEKPFACSYCEKKFTSGYILNSHLKTHTGDRPWQCNVCSKTFTQSSHLTVHMKKHTGEKFSCKVCSQEFAHSSQLTVHMREHTGRQPYKCTVCEKICNYASELQTHMMKHTGEKFSCITCDKKFTTAAYLQEHTRTHTGENLFNCTLCERTFTRATYLEKHIRTHTGERPFSCEVCGKKFTQSSSLNVHMRKHTGEKPYTCNICNRSFATSSYLAVHLRKHKKYISNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00639723;
90% Identity: iTF_01283603;
80% Identity: -