Spec004011.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638203.1:15137170-15143146[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.25 17 6.3 4.4 1 23 6 29 6 29 0.95 2 24 0.043 3 8.6 5.4 1 23 34 56 34 56 0.97 3 24 0.0059 0.4 11.4 2.0 2 23 65 85 64 85 0.95 4 24 4.4e-05 0.003 18.1 0.8 1 23 91 113 91 113 0.96 5 24 2.7e-05 0.0018 18.7 0.5 1 23 119 141 119 141 0.95 6 24 4.7e-06 0.00032 21.1 0.5 1 23 147 169 147 169 0.95 7 24 0.0019 0.13 12.9 0.3 1 20 175 194 175 195 0.95 8 24 0.024 1.7 9.4 0.4 1 21 199 219 199 220 0.95 9 24 0.0014 0.099 13.3 3.5 1 23 226 248 226 248 0.98 10 24 0.49 34 5.3 1.1 1 21 384 404 384 405 0.95 11 24 0.033 2.2 9.0 1.6 3 21 413 431 412 434 0.89 12 24 0.011 0.73 10.5 1.5 3 23 440 460 439 460 0.97 13 24 0.0044 0.3 11.8 4.1 1 23 466 489 466 489 0.96 14 24 4e-06 0.00027 21.3 1.6 1 23 494 516 494 516 0.97 15 24 9.9e-05 0.0068 16.9 6.0 1 23 612 634 612 634 0.97 16 24 5.2e-05 0.0036 17.8 1.2 1 23 640 662 640 662 0.98 17 24 1.8e-05 0.0012 19.3 7.5 1 23 667 689 667 689 0.99 18 24 0.0045 0.31 11.7 0.6 3 23 697 718 696 718 0.95 19 24 0.0014 0.096 13.3 0.6 2 23 724 745 723 745 0.96 20 24 9.5e-05 0.0064 17.0 0.9 1 23 755 777 755 777 0.97 21 24 0.00011 0.0078 16.8 0.2 1 23 783 805 783 805 0.98 22 24 2.4e-06 0.00016 22.0 0.9 1 23 811 833 811 833 0.96 23 24 2.7e-06 0.00018 21.9 6.4 1 23 839 861 839 861 0.97 24 24 0.00018 0.012 16.2 2.6 5 23 870 888 867 888 0.94
Sequence Information
- Coding Sequence
- AtgaaaggtttgaaacatatatGCGACCAGTGCCATTCCGCTTTCCACAGCGAGGCCAAGTTGCAGGAACATAGAAAAATTCAGCACGAAGGGCATCGCTATTTCTGCGAAACTTGCAAGAAAGTGTTCAAATGCCCCATGTATTTTCGTCGGCACCTAAAGGAACATGAAACTGGCTTCAAGGAAACATGCATTTGTAAAGTTTGCTCCAAAGTGGTAACGAGAAGTGCGTTTTCGCGTCATATGAGACTTCACAGGGACGGCAACAAGCACATTTGTGACATTTGCGGAAAAATCTTCACTAGTGTGGAATCATTACGAGATCATAAAAAGTTGCACGACGGAAAGAAACCGTTTCTTTGTGATTTTTGTGGGAAGGGCTTCGCCAGGCAGGTTTACTTGCGACAACACAGACTCGTTCACACTAAGGAGAGACCCTTTTTGTGCGTTGATTGCGGAAAGGGTTTTACGCAGTTGGGAAGTCTCAAGATCCATCGGCGACGACACACCGGGGAGAAGCCGTTTCAATGCAAGATTTGCTCCAAGGCCTTCGTTTCCGGAAATCTACTCACAACTCACACATCCGATGTCAATTATAGTTGCACCACTTGCTTGGAGATCTTCCCCGACCGCGATGAGTTTGTGAAACACCACATGCAACAATACGGGCAAACCTTCCGCTGTTGCAAGTGCGGcaacaaattcaaaaccaTCAGCGACCTCTACGAGCACCTCGACACCCACAAAATGGAGGAAGAGACACCTGAGGAGGTTGTTGAAGAAATAGTACTCGGTTACGAAGAAGAAGATGCCCCTACTAGCGAACTTCTTTACATCCTCGACGATTCACAGTGTGTCAACGAAGTTGTCATTGAAGAAGACAATGTCACTACCACTAGCGCAATTATGGATGCTAAAAAAGATAAACCTGTCGATAACGTTACGATAGTCCGACTGGAACACGGTTACGTCATCCCCGACGCTATTGAAGAAGTAATTAACGGAAAGCAAATTCAGGCTTCGACCAGTAAAGTGTCGTTAACGCCGCGTCCGAGAGCGCCGCAACCCAAGCGTCGTCATGTCGTTCCTGACTTTTCTTCGACGAATTACGTTTATATTGCCGCTAACAAAGAAGTGGAAATAGCGCATTATAAATGTTTGCGTTGCGAACAACTCTTTATCAACAAATTCGTTTTTTTCCGCCACATTGAAAAGGGCAAGTgttatattaataattgcgACGTCTGCAACGCcactttcaacaaaaatagCGAGTTCTACCACCATTACGTTTTCGAACATACTGATAGAgcgatttgtaatttttgcttcCGCACTTTTATGTATGAGAAGAACGTCAAAGAACACATGTTGCGACATTTGGACCAGTTCAGACATAGGTGCGACGAATGCAACAAAGGTTTCTATACTGTGAGAGAGTACAGGAACCATTATAAAAATCGTCATATGGGCATCAGGCACAGTTGTAGTATTTGTGGCCGGAGCTTTGCGGACGAGTACTATTTCAGGCGCCATCTGGCGACTCACGAGCAAGCTACTGTTGTGGCACATGCAATTGCTCTCTACCCGGACCCCATGTACGCGACCAATTACAGTGACGAAACCAACAATCTCCACTTGCTGGTCGACCAGTTGAACGAGTCGGACGCGGATTTGCTCAATTTGTTGACAGCCGAAGATGATTGCACCGCCATATTAAACAACATCGCCACCACCGAACAATTCGAACGTCTCATCAACAACGGATCGAGTTTCGTCGAGGAGCTAATTGacgaaattaaagaaatcgaCGAGAAAACAGTCGCCCGAACATTCAAATGTTTCCATTGCGAGAAGGGCTTTAAAACGAAGAAACTGCTTAAAAAACACCTGTTTATCCACACCGGtgtcaagaaattttcttgcGAGATTTGCGAAAAATCTTTCAAATATCGTTACGAAGTTAACGTCCATAAAAAGATCCACAACAACCCGACTTTTCAATGCGATATTTGCTCGAAAATGTTCATGCACAAGTCGCATTTGACGACGCACCGTCGCAAACATTTGGGGGAGTTTGTGGCGTTTTGTAAAGAGTGTAATTTGGGTTTTGTGACGCAATTTTTGTACAGAACCCATTTGAATTTGGTGCATAAGAACAATCGGTTGGTTTGCGACGTTTGTGGGTGCCGTCTCAGCTCCCTTAGCGCCCTCAAAGAACACAAACTCACCCACGATTCGAATTATGGCAAAGAACGGACGCACGTTTGTGAAATTTGCGGTAAAAGTTATTTGACGTTGCGAAATCTGAAAGGTCACATGAAAATTCACGCGAGGGTTCGTCCGTACGTTTGCAATATTTGCGGGAAGTCTGTTAGtagcaagaaaattttggaaactcacgtcaaaatgcataccgGCGTTAAAGATTTTCTTTGTAAGATTTGCGATAAAAGGTTCGCTTCCAAGGAGTATTTAGACGTGCATCAACGAACGCACACAGGGAATAAGCCGTTTTGTTGCAATGTTTGCGGGAAGCGGTTTACCCAAAAGACGTCGCTCACAGTGCATATGAGGCATCACACAGGACAACGTCCGTATAAGTGTGAGTGCGGCAAAGAGTTCACGACCAAAAGCCACTTGATGACGCATTATAAAGCGCACGATATTGGAGGGGTGGACATTGACTATATATCGCGGCCTTTAGTATAA
- Protein Sequence
- MKGLKHICDQCHSAFHSEAKLQEHRKIQHEGHRYFCETCKKVFKCPMYFRRHLKEHETGFKETCICKVCSKVVTRSAFSRHMRLHRDGNKHICDICGKIFTSVESLRDHKKLHDGKKPFLCDFCGKGFARQVYLRQHRLVHTKERPFLCVDCGKGFTQLGSLKIHRRRHTGEKPFQCKICSKAFVSGNLLTTHTSDVNYSCTTCLEIFPDRDEFVKHHMQQYGQTFRCCKCGNKFKTISDLYEHLDTHKMEEETPEEVVEEIVLGYEEEDAPTSELLYILDDSQCVNEVVIEEDNVTTTSAIMDAKKDKPVDNVTIVRLEHGYVIPDAIEEVINGKQIQASTSKVSLTPRPRAPQPKRRHVVPDFSSTNYVYIAANKEVEIAHYKCLRCEQLFINKFVFFRHIEKGKCYINNCDVCNATFNKNSEFYHHYVFEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCDECNKGFYTVREYRNHYKNRHMGIRHSCSICGRSFADEYYFRRHLATHEQATVVAHAIALYPDPMYATNYSDETNNLHLLVDQLNESDADLLNLLTAEDDCTAILNNIATTEQFERLINNGSSFVEELIDEIKEIDEKTVARTFKCFHCEKGFKTKKLLKKHLFIHTGVKKFSCEICEKSFKYRYEVNVHKKIHNNPTFQCDICSKMFMHKSHLTTHRRKHLGEFVAFCKECNLGFVTQFLYRTHLNLVHKNNRLVCDVCGCRLSSLSALKEHKLTHDSNYGKERTHVCEICGKSYLTLRNLKGHMKIHARVRPYVCNICGKSVSSKKILETHVKMHTGVKDFLCKICDKRFASKEYLDVHQRTHTGNKPFCCNVCGKRFTQKTSLTVHMRHHTGQRPYKCECGKEFTTKSHLMTHYKAHDIGGVDIDYISRPLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -