Spec004557.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizotus pectinicornis
Gene Symbol
-
Assembly
GCA_951805265.1
Location
OX638203.1:20487962-20491770[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 3.2 2.2e+02 2.7 0.1 13 23 237 247 231 247 0.89
2 17 1.6e-05 0.0011 19.4 1.8 1 23 253 275 253 275 0.99
3 17 2.4e-07 1.6e-05 25.2 0.6 1 23 281 303 281 303 0.99
4 17 0.019 1.3 9.8 0.5 1 23 309 331 309 331 0.97
5 17 5.4e-05 0.0037 17.8 6.5 1 23 339 361 339 362 0.95
6 17 5.3e-06 0.00036 21.0 1.4 1 23 371 393 371 393 0.97
7 17 7.1e-07 4.8e-05 23.7 1.2 1 23 399 421 399 421 0.99
8 17 2.3e-06 0.00016 22.1 3.8 1 23 427 450 427 450 0.97
9 17 0.00082 0.056 14.1 3.2 2 23 498 519 498 519 0.94
10 17 4.8e-05 0.0033 17.9 0.6 1 23 524 546 524 546 0.98
11 17 5e-05 0.0034 17.9 2.1 1 23 552 574 552 574 0.98
12 17 8.8e-07 6e-05 23.4 0.6 1 23 580 602 580 602 0.98
13 17 0.0047 0.32 11.7 0.6 1 23 608 630 608 630 0.98
14 17 1.7e-06 0.00011 22.5 1.2 2 23 639 661 638 661 0.95
15 17 7.5e-06 0.00051 20.5 5.7 1 23 670 692 670 692 0.98
16 17 1.4e-07 9.3e-06 26.0 1.2 1 23 698 720 698 720 0.99
17 17 1.1e-05 0.00077 19.9 3.6 1 23 726 749 726 749 0.95

Sequence Information

Coding Sequence
ATGGATCTGCTATGCAGAGCTTGTTCGGTTCAACTTGCGCCCAATGGTGCAGTTAGCTTGTTGATCTTTAATAAAGACAAAATACCCCTGACCGAAATATTGATGGACGTAGCCCCCATATcgGTTTTCGCGGATGATCCCTTACCGAAAgtgatttgtttaaattgtcTTGAGAAAATGACCTGTGCTTATCAGTTTAGAAAGAAAGTAATTGAGACTGACTTAAAGCTAAGGCAAGAAATAAAGGTAGAATATTGGccagaaaatgaaaataattatgcagAATTGGAACCCCTGACGGAAGATTTCATGCAAGTGTCTGAAGATGTACAGTTTTCTGTGATCAAACCagaatcagaagtgggacaagAAGATTTTAATTCAGAACCTAGTAACACTATTAGGGAACGTATCGTGTTGAATTCGAGCAGGGACCACAGCAGTATTCCCAACGAAATTTCTGCGCACCTTCCACTTAGTTCAATTTTAATCAAGGAGGAGgccgaaataaaaatagagccATGTACGTTGGGTGATGTAAATTTAGGAAAAGTAACTGACAACACGCCGGAATTTATTCCAATTGAAGATAATGTCCCCAACGAAACTCGAGAACAGGTCAAAAAGAAGCTGAAACTCAGTGCAGGGGTTCAGAAGAAAAACTGCAGTACAAATAGCGACGATCCGGCTACTTGCGAACAATGCGTAAAAGAAAACCTTAGGGTTCATAAGCGGGTCCATTCGGATGAAAGACCCTACAAGTGCAGCCTCTGCGACAAAGCTTTcaagcaAAAGTCTATCTTAAACACCCACCGTAAGATTCATCAGGAAACTAAGTCATACGTTTGCTCAACATGTGGCAAGAGTTTCTATCAGAAGGGGGCTTTAAGAGTCCACGAGCGCACGCACACTGGCGAAAAACCTTTTGTTTGCGAATTTTGCAGCGCCCGTTTCGCTGAATTGGTGACGTTAAAAAAGCATTTTGTGACCCATCCAGAAGCTGATCTCCCTTTGTTCCCGTGCCATATTTGTGAAAAAACTTTCAGACATAAAAACTATCTGGCTATTCACGTTAAGAAACATCATTCGGAGAAATCGGAAAACCAACGACACCAATGCGGTACTTGCGGCAAGAAATTTACCACTTCAGGTTCTGTCAGGGTCCACATGATGCTCCATACAGGACTAAAACCGTATCGTTGCAAGATTTGCGAGAAGAGTTTTCGGCAAAGTGGCATTCTGGTGAGACACATGAGGACGCATTCCGGGGAGAAGCCGTATCCCTGTAATGTTTGCGACAAAAAGTTTCCATACTCTCACCATTTGCTGAAACATATGAACAGGGAGCATCCCAGCGAGGaaaaagtggCTGACGGCACCTCTGTATTAATTCCAATTGAAGAAAATGTCTCCAACGAAATTCAAGGAAATGTCAACAAGAAGCCGAAACTCAGTGAGAAGAACTGCAGTTCAAAGAGCGACAAACCGGCTACTTGCGAACAATGcgataaaacatttaaaaacaaacgtcGCCTCAGAATTCACAATTATCGTCATCGGGGTGGGGGGTTCAATTGCGATATTTGTAACAGAAGGTTTGCAATAAAAGAAAGCCTTAGGGTTCATAAGCGGATCCATTCGAATGAAAGACCCTACAAGTGCAGCTTCTGCGACAAAGCTTTcaagcaAAAGTCCATCTTAAATACCCACAGTAGAATTCATCAAGGAATTAAGCCATACGTTTGCTCAACATGTGGGAAGAGTTTTCGACAATTGACAGGATTGAAAGTCCACGAGCGCATGCACACCGGCGAAAAACCTTACGTTTGCGAGTTTTGCAGCGCCCGTTTCGCCCAAATGCTCGCCTTAAAGAAGCATTTTATGACTCATCGAGACCCTAATCTCCCTTTGTTGCCATGCGATGTTTGTGGAAAGACTTTCAGACATCAAAGTTATCTGTCTGTGCACGTTAAGAGAAACCATTTGAAGAAATTGGAAAAGTATCGGCATAAATGCGACACTTGCAGCAAGAAATTTACCACTTCAGGATGTCTCAAGGCCCACATGAGGGTACATACGGGGGAAAAGCCGTATCGTTGCAAGATTTGCGAAAAGAGTTTTCGGCAAGCCACCGTTCTGGTGAGGCACATGAGGACGCATTCTGGGGAGAAACCGTATCTGTGTGAGGTTTGCGACAAAAGGTTTCCATACTCTCACCATTTGCTGAAACATATGAACAGGGAGCATCCCCGTGAGGGCTcagaaaattga
Protein Sequence
MDLLCRACSVQLAPNGAVSLLIFNKDKIPLTEILMDVAPISVFADDPLPKVICLNCLEKMTCAYQFRKKVIETDLKLRQEIKVEYWPENENNYAELEPLTEDFMQVSEDVQFSVIKPESEVGQEDFNSEPSNTIRERIVLNSSRDHSSIPNEISAHLPLSSILIKEEAEIKIEPCTLGDVNLGKVTDNTPEFIPIEDNVPNETREQVKKKLKLSAGVQKKNCSTNSDDPATCEQCVKENLRVHKRVHSDERPYKCSLCDKAFKQKSILNTHRKIHQETKSYVCSTCGKSFYQKGALRVHERTHTGEKPFVCEFCSARFAELVTLKKHFVTHPEADLPLFPCHICEKTFRHKNYLAIHVKKHHSEKSENQRHQCGTCGKKFTTSGSVRVHMMLHTGLKPYRCKICEKSFRQSGILVRHMRTHSGEKPYPCNVCDKKFPYSHHLLKHMNREHPSEEKVADGTSVLIPIEENVSNEIQGNVNKKPKLSEKNCSSKSDKPATCEQCDKTFKNKRRLRIHNYRHRGGGFNCDICNRRFAIKESLRVHKRIHSNERPYKCSFCDKAFKQKSILNTHSRIHQGIKPYVCSTCGKSFRQLTGLKVHERMHTGEKPYVCEFCSARFAQMLALKKHFMTHRDPNLPLLPCDVCGKTFRHQSYLSVHVKRNHLKKLEKYRHKCDTCSKKFTTSGCLKAHMRVHTGEKPYRCKICEKSFRQATVLVRHMRTHSGEKPYLCEVCDKRFPYSHHLLKHMNREHPREGSEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-