Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: -
Assembly: GCA_951805265.1
Location: OX638207.1:9105441-9108507[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.015 1 10.1 0.1 10 23 3 16 1 16 0.94

2 15 3.1e-05 0.0021 18.5 1.6 1 23 22 44 22 44 0.97

3 15 3.5e-06 0.00024 21.5 0.2 1 23 50 72 50 72 0.96

4 15 1.7e-06 0.00012 22.5 1.7 2 23 84 105 84 105 0.97

5 15 4.9e-07 3.3e-05 24.2 0.3 1 23 110 132 110 132 0.95

6 15 0.0015 0.1 13.2 0.4 1 23 138 160 138 160 0.97

7 15 9.9e-05 0.0068 17.0 0.7 1 23 183 205 183 205 0.97

8 15 1.8e-05 0.0012 19.3 1.9 1 23 211 233 211 233 0.97

9 15 3.7e-07 2.5e-05 24.6 0.2 1 23 239 261 239 261 0.97

10 15 2.8e-05 0.0019 18.7 3.7 2 23 273 294 272 294 0.97

11 15 8e-06 0.00055 20.4 0.6 1 23 299 321 299 321 0.95

12 15 4.7e-05 0.0032 18.0 0.2 1 23 327 349 327 349 0.97

13 15 3.1e-06 0.00021 21.7 1.9 1 23 355 377 355 377 0.97

14 15 4.6e-07 3.1e-05 24.3 0.2 1 23 383 405 383 405 0.99

15 15 7.7e-07 5.2e-05 23.6 2.8 1 23 411 433 411 433 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.015	1	10.1	0.1	10	23	3	16	1	16	0.94
2	15	3.1e-05	0.0021	18.5	1.6	1	23	22	44	22	44	0.97
3	15	3.5e-06	0.00024	21.5	0.2	1	23	50	72	50	72	0.96
4	15	1.7e-06	0.00012	22.5	1.7	2	23	84	105	84	105	0.97
5	15	4.9e-07	3.3e-05	24.2	0.3	1	23	110	132	110	132	0.95
6	15	0.0015	0.1	13.2	0.4	1	23	138	160	138	160	0.97
7	15	9.9e-05	0.0068	17.0	0.7	1	23	183	205	183	205	0.97
8	15	1.8e-05	0.0012	19.3	1.9	1	23	211	233	211	233	0.97
9	15	3.7e-07	2.5e-05	24.6	0.2	1	23	239	261	239	261	0.97
10	15	2.8e-05	0.0019	18.7	3.7	2	23	273	294	272	294	0.97
11	15	8e-06	0.00055	20.4	0.6	1	23	299	321	299	321	0.95
12	15	4.7e-05	0.0032	18.0	0.2	1	23	327	349	327	349	0.97
13	15	3.1e-06	0.00021	21.7	1.9	1	23	355	377	355	377	0.97
14	15	4.6e-07	3.1e-05	24.3	0.2	1	23	383	405	383	405	0.99
15	15	7.7e-07	5.2e-05	23.6	2.8	1	23	411	433	411	433	0.98

Sequence Information

Coding Sequence: ATGCAGTTTAGTTCAGCAGGTAATTTGAATCGGCACATAAAGATACATACGGGCGAAAAACCTCATCATTGTGATATATGCGGAAGAGGTTTTATCCAAGCAGGGACCTTGGCGTACCACAAACGTACACACACGGGTGAAAAACCATTTGCTTGCCTCGAGTGTGGCAAGAAATTTGTACAGCGCAGTGCGCTTCAGGCTCACTCACAGATACACCAACTCAAATCGGAAGGTTTTTTGCAAAGTAACGAGTGCGAAACATGTAAAAAAGTGTTTGGTTCAAAACAATTGTTGAAAAGGCACATGCGTTCACATGGCGAAAAGTCCTTTCTGTGCAGTCAATGTGGTAAAGGTTTCAATACCAATGGTAACTTAAAAGCGCATCTTAACATCCACACAGGAGTGAAACCGTACGCGTGTGAGTTCTGCAGCAAACGTTTTTTGCAAGAGGGAACGTTGAAAACGCATATTCTGGTTCACACCGGGGAAAAACCATTTACCTGCAAGCTAAAGCAACATATGTTATCACATACGAAAGAAAAACCATTTgcctgcaaattttgtttcatgcAATTTAGTTTAGCAGGTAATTTGAAGCGGCACATAAATATACATACAGGCGAAAGACCTCATTGTTGTGATATATGCGGAAAAGGTTTTATCCAAGCAGGGACCTTGGCGTACCACAAACGTACCCACACAGGTGAAAAACCATTTGCTTGCTCCGAGTGTGACAAGAAATTTATACAGCGCAGTGCGCTTCGAGCTCACTTACAGATACACCAACTCAAATCGGAAGGTTTTTTGCAAAGTAACCAGTGCGAAACATGTAAAAAAGTGTTTGATTCAAAACAATTGTTGAAAAGACACATGCATTTACATGGCGAAAAGTCCTTTCTGTGCAGTCAATGTGGTAAAGGTTTCACGACCAACGCTGCCttaaaaacacattttaaCATTCACATAGGAGTGAAACCGTACGCGTGTGAGTTTTGTAGCAAGCGTTTTTCGCAAGGGGGAGCGTTGAAAACGCATATTCTGGTTCACACCGGGGAAAAACCATTTATCTGTGAGGTGTGTTCAAAGAGTTTTAATCAAAGAGGGCATTTACGCACTCACTTGATGTTGCACAGGGGAGAGAAACCCTACAGCTGTTCGTTATGCACGAAATCGTTTTCAGAGCCAGCTGCGTTGAGGATACATATAAGGACTCACACTGGGGAAACACCATATGTTTGCAACGTTTGCTCTAAGGGGTTTAAGTCACCAAGCAATTTCAAGAAACACAAGAAGAAGCATGATACAGCAACTAACAACCAAATTGTGAAGTGA
Protein Sequence: MQFSSAGNLNRHIKIHTGEKPHHCDICGRGFIQAGTLAYHKRTHTGEKPFACLECGKKFVQRSALQAHSQIHQLKSEGFLQSNECETCKKVFGSKQLLKRHMRSHGEKSFLCSQCGKGFNTNGNLKAHLNIHTGVKPYACEFCSKRFLQEGTLKTHILVHTGEKPFTCKLKQHMLSHTKEKPFACKFCFMQFSLAGNLKRHINIHTGERPHCCDICGKGFIQAGTLAYHKRTHTGEKPFACSECDKKFIQRSALRAHLQIHQLKSEGFLQSNQCETCKKVFDSKQLLKRHMHLHGEKSFLCSQCGKGFTTNAALKTHFNIHIGVKPYACEFCSKRFSQGGALKTHILVHTGEKPFICEVCSKSFNQRGHLRTHLMLHRGEKPYSCSLCTKSFSEPAALRIHIRTHTGETPYVCNVCSKGFKSPSNFKKHKKKHDTATNNQIVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -