Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: -
Assembly: GCA_951805265.1
Location: OX638205.1:14476707-14479140[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.9e-06 0.0002 21.8 0.8 1 23 140 162 140 162 0.98

2 15 3e-08 2e-06 28.0 1.0 1 23 168 190 168 190 0.96

3 15 3.7e-05 0.0025 18.3 4.0 1 23 196 218 196 218 0.98

4 15 8.7e-07 6e-05 23.4 1.7 1 23 224 246 224 246 0.98

5 15 2.1e-05 0.0014 19.1 0.4 1 23 252 274 252 274 0.97

6 15 4.1e-08 2.8e-06 27.6 3.2 1 23 280 302 280 302 0.99

7 15 2.1e-06 0.00014 22.2 2.2 1 23 308 330 308 330 0.98

8 15 4.9e-07 3.3e-05 24.2 1.1 1 23 336 358 336 358 0.95

9 15 1.4e-05 0.00093 19.7 3.2 1 23 364 386 364 386 0.99

10 15 1.4e-07 9.3e-06 26.0 0.8 1 23 392 414 392 414 0.98

11 15 5.2e-07 3.6e-05 24.1 0.5 1 23 423 445 423 445 0.97

12 15 1.2e-05 0.00085 19.8 2.5 1 23 451 473 451 473 0.98

13 15 9.5e-07 6.5e-05 23.3 0.2 1 23 479 501 479 501 0.98

14 15 4.3e-06 0.00029 21.2 1.2 1 23 507 529 507 529 0.99

15 15 2e-05 0.0014 19.2 0.5 1 22 535 556 535 559 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.9e-06	0.0002	21.8	0.8	1	23	140	162	140	162	0.98
2	15	3e-08	2e-06	28.0	1.0	1	23	168	190	168	190	0.96
3	15	3.7e-05	0.0025	18.3	4.0	1	23	196	218	196	218	0.98
4	15	8.7e-07	6e-05	23.4	1.7	1	23	224	246	224	246	0.98
5	15	2.1e-05	0.0014	19.1	0.4	1	23	252	274	252	274	0.97
6	15	4.1e-08	2.8e-06	27.6	3.2	1	23	280	302	280	302	0.99
7	15	2.1e-06	0.00014	22.2	2.2	1	23	308	330	308	330	0.98
8	15	4.9e-07	3.3e-05	24.2	1.1	1	23	336	358	336	358	0.95
9	15	1.4e-05	0.00093	19.7	3.2	1	23	364	386	364	386	0.99
10	15	1.4e-07	9.3e-06	26.0	0.8	1	23	392	414	392	414	0.98
11	15	5.2e-07	3.6e-05	24.1	0.5	1	23	423	445	423	445	0.97
12	15	1.2e-05	0.00085	19.8	2.5	1	23	451	473	451	473	0.98
13	15	9.5e-07	6.5e-05	23.3	0.2	1	23	479	501	479	501	0.98
14	15	4.3e-06	0.00029	21.2	1.2	1	23	507	529	507	529	0.99
15	15	2e-05	0.0014	19.2	0.5	1	22	535	556	535	559	0.91

Sequence Information

Coding Sequence: ATGGTAATAAGCAACGAATTAGATTATGTTTGTGAATCAAAACCCAACGCTGTGACTTTAATGCAGAAAATAATGTATTGCGCAAACATTTTGCTTTTAGAAAACGACGAACTTCCCCTTAACATCTGCAAAGAATGTATTTACAAACTAGACATTGCGTACCAATTTCGGAAGCGTTGTGAAGAAGTTGATGTCACTTTGAGAAATATGCTTCAAGAGAAACGACACAAATTTCAGCAATGTTTAAAACTTAGCGAACTTAAAACAGACTTTGTCAAAGACGCTAAAGGAACCACTGAACCCAACACATATTGTACCAAAGACGACATAAAAGTGAATGAAAACAGGTTATCAGGCGGTGAAGTTAGTGATAACGAATCAATACCATCTTTAGAGAACAAGCAGCAAAACAAACGTTTTACGTgccaaatttgcaataaacagTACATGCAGCAAACTGGCTTGGCCCGTCACATGCGGGTTCACACTGGAGAGCGGCCGTTTTTGTGCAATCACTGTGGTAAAGGTTTCATAAGGTCAGATGACCTGATTCGTCACATGAGAGTTCACACTGGAGAGAGACCTTTTgtgtgcaaaatttgcaagagAGGGTTCAAGCAGAAGTTTCACCTTTCGGAACACGAGCGTTCTCACAAAAATCAAAAGGAGTTTTCCTGCGATGAATGCGGCAAAACCTTCACTCGCTATGGCGTGCTCAGAACCCATAAGCGGACCCACACGGGATTGAGGCCGTACGCTTGCACTTTTTGCCCGAAAACTTTCGTCGGTTCCGACACCCTCTCCAGACACTTGAAGGCCCACAATGGCGAAAGACCGTATCGTTGCAAGGAATGTGGTCGAAGCTTCAGCCAGTCTGACCACCTGAAAGTGCACAAAAGAATTCATTCGAAAACTCGCCCTTACATCTGTCAACTTTGCACGAAAACCTTCACGCAACAGCACGGACTCAACATCCACATGATGAGTCATACAGGAGAAAAGCCGTTTCTGTGCGCGACTTGCGGAAAGTCGTTCACTAGATctgacgatttgaagaaacATTCTCGGATTCACAGCAACGAAAGGCCGTACTCGTGCACCATGTGCACGAAGGCTTTTATGCAATCGTTTCATCTCTCCGAACACATAAGAACGCATTTGCAGGATAGAGGGTTTTCGTGCGGTGTttgtaataaaacttttgctcGAAACGGGTCGCTGCGGTCTCATCTGAGAACACACACCAAAGAGTACACGGAAAAACTTTTTGCGTGTAACGTGTGCGGGAAAAGGTTCAGCATCAACTACTCTTTGAATAAGCACATGTTGATCCATACCGGGGAGAAGCCCCATCGTTGTGACGTTTGTTTAAAGGCCTTTACCCAGTCTGGTCATCTGGAGACGCATTTGAAGATTCACACGGGGGAAAAGCCCTTCATCTGTCAGATATGCGGCAAAGGTTTTGCGGTCAGTTCCCGCCTCACAGTGCACATGCGCAGTCACACGGGAGAGAAACCCTACGTTTGTGCGGTTTGCGGCAAGGGCTGCACTACGTCCACTATGCTCAAAGTTCACACCCGCACGCATACCGGGGAAACCCCGTACAGCTGCCCCTCGTGCTCCAAAGCGTTTTCTCGTTCAGATCTCTTGAATatacacaaaaaaagttctggtcattaa
Protein Sequence: MVISNELDYVCESKPNAVTLMQKIMYCANILLLENDELPLNICKECIYKLDIAYQFRKRCEEVDVTLRNMLQEKRHKFQQCLKLSELKTDFVKDAKGTTEPNTYCTKDDIKVNENRLSGGEVSDNESIPSLENKQQNKRFTCQICNKQYMQQTGLARHMRVHTGERPFLCNHCGKGFIRSDDLIRHMRVHTGERPFVCKICKRGFKQKFHLSEHERSHKNQKEFSCDECGKTFTRYGVLRTHKRTHTGLRPYACTFCPKTFVGSDTLSRHLKAHNGERPYRCKECGRSFSQSDHLKVHKRIHSKTRPYICQLCTKTFTQQHGLNIHMMSHTGEKPFLCATCGKSFTRSDDLKKHSRIHSNERPYSCTMCTKAFMQSFHLSEHIRTHLQDRGFSCGVCNKTFARNGSLRSHLRTHTKEYTEKLFACNVCGKRFSINYSLNKHMLIHTGEKPHRCDVCLKAFTQSGHLETHLKIHTGEKPFICQICGKGFAVSSRLTVHMRSHTGEKPYVCAVCGKGCTTSTMLKVHTRTHTGETPYSCPSCSKAFSRSDLLNIHKKSSGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01283599;
90% Identity: -
80% Identity: -