Basic Information

Insect: Schizotus pectinicornis
Gene Symbol: PRDM13
Assembly: GCA_951805265.1
Location: OX638203.1:15147414-15153421[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 38 0.013 0.89 10.3 0.1 2 23 58 79 57 79 0.90

2 38 2.7 1.8e+02 3.0 4.8 1 23 85 107 85 107 0.97

3 38 0.0084 0.57 10.9 1.9 1 23 113 135 113 135 0.91

4 38 0.00014 0.0098 16.4 3.6 1 23 141 164 141 164 0.98

5 38 0.00064 0.044 14.4 3.1 1 23 176 199 176 199 0.93

6 38 0.023 1.6 9.5 0.8 3 23 210 230 209 230 0.98

7 38 4.3e-07 2.9e-05 24.4 1.1 1 23 236 258 236 258 0.98

8 38 3.7e-06 0.00025 21.4 0.7 1 23 264 286 264 286 0.98

9 38 0.028 1.9 9.2 0.1 1 21 292 312 292 313 0.94

10 38 0.00078 0.053 14.1 1.3 2 23 344 365 343 365 0.97

11 38 0.16 11 6.9 1.8 1 23 369 391 369 391 0.86

12 38 0.029 2 9.2 0.4 1 23 396 419 396 419 0.95

13 38 0.24 16 6.3 0.9 1 19 424 442 424 446 0.91

14 38 1.5 1e+02 3.8 5.5 1 23 452 475 452 475 0.88

15 38 0.0089 0.6 10.8 7.8 1 23 487 509 487 509 0.98

16 38 0.00071 0.049 14.3 1.0 2 23 515 536 515 536 0.97

17 38 0.00071 0.048 14.3 4.1 1 23 542 564 542 564 0.97

18 38 4.8e-07 3.3e-05 24.2 0.5 1 23 570 592 570 592 0.99

19 38 0.011 0.74 10.5 0.3 1 23 638 661 638 661 0.91

20 38 0.00014 0.0093 16.5 0.1 1 23 692 714 692 714 0.99

21 38 8.3 5.7e+02 1.5 0.4 1 23 719 741 719 741 0.88

22 38 0.21 14 6.5 1.0 3 23 749 769 747 769 0.93

23 38 2.2e-05 0.0015 19.0 2.4 1 23 775 797 775 797 0.98

24 38 0.01 0.71 10.6 4.0 1 23 803 826 803 826 0.95

25 38 1.9e-05 0.0013 19.2 0.9 1 23 837 860 837 860 0.97

26 38 6.5e-07 4.5e-05 23.8 0.1 2 23 869 890 868 890 0.97

27 38 0.011 0.77 10.5 0.1 2 20 897 915 896 916 0.94

28 38 1.5 1e+02 3.8 5.5 2 23 991 1012 990 1013 0.94

29 38 0.044 3 8.6 2.1 1 23 1034 1057 1034 1057 0.98

30 38 0.44 30 5.5 5.9 1 23 1061 1083 1061 1083 0.90

31 38 0.061 4.1 8.2 2.0 1 23 1089 1112 1089 1112 0.97

32 38 0.064 4.4 8.1 0.9 1 14 1118 1131 1118 1140 0.83

33 38 0.0025 0.17 12.5 2.4 1 23 1146 1169 1146 1169 0.96

34 38 0.0027 0.19 12.4 1.1 2 23 1181 1203 1180 1203 0.97

35 38 7.8e-06 0.00053 20.4 0.9 3 23 1217 1237 1215 1237 0.96

36 38 6.7e-06 0.00046 20.6 0.4 1 23 1243 1265 1243 1265 0.98

37 38 1e-05 0.0007 20.0 1.5 1 23 1271 1293 1271 1293 0.97

38 38 0.01 0.71 10.6 1.1 1 21 1299 1319 1299 1320 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	38	0.013	0.89	10.3	0.1	2	23	58	79	57	79	0.90
2	38	2.7	1.8e+02	3.0	4.8	1	23	85	107	85	107	0.97
3	38	0.0084	0.57	10.9	1.9	1	23	113	135	113	135	0.91
4	38	0.00014	0.0098	16.4	3.6	1	23	141	164	141	164	0.98
5	38	0.00064	0.044	14.4	3.1	1	23	176	199	176	199	0.93
6	38	0.023	1.6	9.5	0.8	3	23	210	230	209	230	0.98
7	38	4.3e-07	2.9e-05	24.4	1.1	1	23	236	258	236	258	0.98
8	38	3.7e-06	0.00025	21.4	0.7	1	23	264	286	264	286	0.98
9	38	0.028	1.9	9.2	0.1	1	21	292	312	292	313	0.94
10	38	0.00078	0.053	14.1	1.3	2	23	344	365	343	365	0.97
11	38	0.16	11	6.9	1.8	1	23	369	391	369	391	0.86
12	38	0.029	2	9.2	0.4	1	23	396	419	396	419	0.95
13	38	0.24	16	6.3	0.9	1	19	424	442	424	446	0.91
14	38	1.5	1e+02	3.8	5.5	1	23	452	475	452	475	0.88
15	38	0.0089	0.6	10.8	7.8	1	23	487	509	487	509	0.98
16	38	0.00071	0.049	14.3	1.0	2	23	515	536	515	536	0.97
17	38	0.00071	0.048	14.3	4.1	1	23	542	564	542	564	0.97
18	38	4.8e-07	3.3e-05	24.2	0.5	1	23	570	592	570	592	0.99
19	38	0.011	0.74	10.5	0.3	1	23	638	661	638	661	0.91
20	38	0.00014	0.0093	16.5	0.1	1	23	692	714	692	714	0.99
21	38	8.3	5.7e+02	1.5	0.4	1	23	719	741	719	741	0.88
22	38	0.21	14	6.5	1.0	3	23	749	769	747	769	0.93
23	38	2.2e-05	0.0015	19.0	2.4	1	23	775	797	775	797	0.98
24	38	0.01	0.71	10.6	4.0	1	23	803	826	803	826	0.95
25	38	1.9e-05	0.0013	19.2	0.9	1	23	837	860	837	860	0.97
26	38	6.5e-07	4.5e-05	23.8	0.1	2	23	869	890	868	890	0.97
27	38	0.011	0.77	10.5	0.1	2	20	897	915	896	916	0.94
28	38	1.5	1e+02	3.8	5.5	2	23	991	1012	990	1013	0.94
29	38	0.044	3	8.6	2.1	1	23	1034	1057	1034	1057	0.98
30	38	0.44	30	5.5	5.9	1	23	1061	1083	1061	1083	0.90
31	38	0.061	4.1	8.2	2.0	1	23	1089	1112	1089	1112	0.97
32	38	0.064	4.4	8.1	0.9	1	14	1118	1131	1118	1140	0.83
33	38	0.0025	0.17	12.5	2.4	1	23	1146	1169	1146	1169	0.96
34	38	0.0027	0.19	12.4	1.1	2	23	1181	1203	1180	1203	0.97
35	38	7.8e-06	0.00053	20.4	0.9	3	23	1217	1237	1215	1237	0.96
36	38	6.7e-06	0.00046	20.6	0.4	1	23	1243	1265	1243	1265	0.98
37	38	1e-05	0.0007	20.0	1.5	1	23	1271	1293	1271	1293	0.97
38	38	0.01	0.71	10.6	1.1	1	21	1299	1319	1299	1320	0.95

Sequence Information

Coding Sequence: ATGGCCCCGAAGAAGAACGGCACCTCTCCTAAACGCAAGAGACGCAGCAGAAAAACCGAGCTGGAAGTGGAAATTCTGGAGGCCATCGACGATCCCGATTACGTGCCGATCAAAGAGGAACCGGGAGAGGAGGAGGACAACGAGCCTAGTGTTGGTGGGACTGAAGCAGTGCGGTGCGAGATCTGcgacaaaatttacaaaaacaacgTGGCGTTCGCGTTGCACTCGATCGACCATAACGAAGACAATAAGTATTCGTGCCATTTTTGCGAATATAGGAACTCGTCCAAGTACCATATAGAAATGCACATAAAAGCACACGAAGGTACCACCAAGTACAAGTgcgaaatttgccaaaaagcgTTCACAGTCAGTACTCACGCAATTGAACATAAATATTTCCATACGGGCGAGAAGCCGTTTCAGTGCGAAATTTGCGGGAAACATTTCATGTTTTCGTGGTTTTTGACGTCGCATCGCCGGACCCAACATTGGGAGATCATGACCGGCACCCCTTTAGTCAAGTACGATTGCACCATTTGCAATAAGCACTACACGTCCTCGACTGGGCTACGCAGACACAATTTGAGTAAACACAACGTTACCGGCATCGACCCGTCGGTTCTTTGCGATGTTTGCGGTAAAAGACTGGCGAGTAAAGAGAAGCTCAAGTTTCATCGCAGAATCCATACGGGCTATAAACCGTACAGTTGCGAGATTTGCACTAAAAGTTTTTCGAGGAAGGAACAACTGAAGGAACATGAAAGGGTACACACCGGGGAAAAAccgtttatttgcaatttttgtggAAAGGGGTTCACGCAGAGGTCGCCGTTGAAGATACACGAACGAACACATACGGGGGAACGACCATATGTTTGCAGGGTGTGCGGGAAAGGGTACATCTCCAAAGGCGTGATGGACACTCATATGAAGAGCTGTACCGCAATTCCCACGTATATACCGGAATATTTCATGCCAATTGTAACGATAGACGAAATAAAGCGGGCAGAAGTCGCCGAAAAAATCCCATGCGACATATGCGGTAAGCATCTGAGAAATCGCACCACTATGCGTGAACATCTCAAGATGCACACTGATCACTTCTCATGCCCCAAATGCGGAAGAAACTACAAGCAAGTCGTGGATTACGTTTTTCACGTGCACACTCACACTCTTGGCGACTACGCTTGCGCTTTCTGCAACTACGCCACCAAGGACTCATCGCAAATAAAGCTGCACTTGAAGGAGAGCCACGACGGTCCAAAATACGTTTGTAAATTGTGTAAGAAAGGTTTCAACATTCAGCAATGGTTTGAGGAACACGACAATTTCCATTCGGGCAAGAAACCTTTCACGTGCGAACTGTGCGAAAAAACCTTCTTGTACACCCGCCATCTGGAGGCGCATAAATTCCACTTTCAtccggaaaaaaataaaatcaccgAACCAAATTTGCATCAATGTCGCGTTTGCAATAAACATTACCAGCACAGGAACAGTTTGAACGTGCACATGAACAGCCATACCGGCAATGTGGCCGTTTGCGATGTTTGCGGGAAAACGTTGTCGAGCAAGGAGAAACTCAAGTTTCACTTGAGAACTCACACGGGTTACAAGCCGTTTTGTTGCACGTATTGCGGCAAGTGTTTTACGAAAAAACCGATTTTAGTTGAGCATATTCGCATTCATACGGGGGAGAAACCGTATGTTTGCGAGTACTGCAGCAAAGGGTTCTCGCAAAGGTCGAGTCTCGTTATTCATATCAGGAGTCATACGGGCGAGAAGCCATTTGTTTGTAGCGTTTGCAGCAAAGGgaaagttttaattgacgACCAAGTGTATTTTATCCAAGAGACAATAATCGTTGGCGTGGTGGACGACGAGCCCCCGCCCAAGCGCAGACGGGAGTTCTTGTGCGAAGAATGCGGCCTGGTGCTGAAGAGCTCCGCGTCGCTATCCCACCACAAAGACATCGTCCACAAATCGACCCTCAAACCGGAAATCCTCTGCAACCAATGCGGCATGTTCTTCAAAACAAATTGCTATCAAGCACACAGAAGATGTCACACTTACTCGTGTGACGTGTGTCCCGCGGAATTCATGACCCTCGAAGACCTCACCAACCACCAACAAACTCACGCAACAGTCAAATACTTTTGTGATAAATGCAACGCATACTTCCTCCTACCTTTCGATTTGGTTCTGCACACTCAAGAGCACGAGAACAGCGAGAAGATGCGCTGCATCAAATGTCCTTTCGTTACCAAAAATCAATGGACGATGAAAGATCATTTGCGGAGACACGCAGCCTCTTTCAATTACGTTTGCGAAATTTGCCATAAACGTTTTTACCGCAAACTCCAGCTTAAGGCCCATCGAGAGGTTCAcgcacaagaaaaaaaatttacttgtaaATTTTGCGATAAGAAGTTTATAGCACAACGGTATTTGTGTGTTCATGAAAAGTTGAATCATACCAAGGAGTTGACGGGGATTGAGATCAGTTATCAGTGTGCCGAGTGTGGACGGCAGTTCACtttcgaaaaaagtttgaagCGGCACTTGAGCAGCATTCACAAAATTGGACCAAACTGGCAAGTGTCGTGTCCAATTTGCGAGAAGGTCGTGTCCAACAACTACAATTTAAAGATACACATGAGGATGCACACGGGAGAGAAGCCTCTGGTTTGCGAAACTTGCGGCAGTCGATTTGCCACCCCCAAGACTTTCAGGAAGCATGTCGTTTGTAAACATGGGGCGGTTGTGGCGAAGAACCGGTTGCAAATAAAGTTTGAAGTCGAGGACGCCGACGTGGCCGTCAACATATTACGCCGTAAATTGCGTCGCAAACTGAAAACGACTGAAGACGACACCGACTACGTACCGTCCCAAAAAAAGCGcgtcaaaaaagaaaagttgccCATTTTGATCGACCTCAAAGAGCCCTTGCCCAAACAGCGCATTTGGACTTGCAGGAAATGCCTGATGGAGTTTCCCAAACGCAAACACTTATTCGACCATTCTAAAAGCCACCACCGCAACCACGAGGACCAACAAGAAACGCTACCCTACAAGTACGACGAAGCGTTAGAAGTGTACACTTGCAACACTTGTTCGGCGGAATTCGCCGATAAATGCGAAACGGAAACGCACATACAGAAAAAACACACTGAAGAGTACGATTGCGAGGAATGCCACAAGAAATTTAACAGCGCTTACTTGTTCTCGTGCCACACCCAACAACATAGCGAAGACGGCAAGTTCAGTTGTCCCTTGTGCAGTTACAGCACCCCTAGACGCACTTGCATTATGACTCACATCAATCGGATGCACTACCACAAATTCTACTATTATTGTAAGACCTGCGGAAAAGGCTTCAACGATTCAGTCATTTTCAAGGAGCACGACAACGAGCATTTAGGTTTAAAACCGTTCATTTGCGTTGTTTGCCACAAGGCGTTCGTGTTCTCGAGATACTTGCAGTTGCATCAAACTCGTTACCATACGGTCGGAATCGAGGGACAACTGCACGAAAAACAGTGTCCTGTTTGCTTGAAACAGTTTGCGAAAATGGAAACGTTGACGAAGCATCTGACCACAAGACACGCCACCGGTTCCGGAGCGCCCAGAGAAAAGCGCCATCTCTGCGACGTTTGCGGGAAAGGGTTCGCGACTAAAGACAAGTTGAGGATTCACTATAGGATCCATACCGGTATTAAGCCGTATGTGTGTAGTTATTGTCCCAAGAGTTTCATTAAGCGAGATTACTTGATAATGCACGAGAGGGTGCATACGGGGGAGAAACCGTATGCCTGTCACTTTTGTGGCAAGTGCTTCAATCAAGCGGCGCCGTTGAGAATCCATATTAGGGGGCATACGGGGGAGAGACCTTACATTTGCCAGTTCTGCAATTGCGGGTTTATTTCGAAGGGGTCACTGAATATGCATAGAAAAGTGTGTAGGGGGAGTGTTGATTAG
Protein Sequence: MAPKKNGTSPKRKRRSRKTELEVEILEAIDDPDYVPIKEEPGEEEDNEPSVGGTEAVRCEICDKIYKNNVAFALHSIDHNEDNKYSCHFCEYRNSSKYHIEMHIKAHEGTTKYKCEICQKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIMTGTPLVKYDCTICNKHYTSSTGLRRHNLSKHNVTGIDPSVLCDVCGKRLASKEKLKFHRRIHTGYKPYSCEICTKSFSRKEQLKEHERVHTGEKPFICNFCGKGFTQRSPLKIHERTHTGERPYVCRVCGKGYISKGVMDTHMKSCTAIPTYIPEYFMPIVTIDEIKRAEVAEKIPCDICGKHLRNRTTMREHLKMHTDHFSCPKCGRNYKQVVDYVFHVHTHTLGDYACAFCNYATKDSSQIKLHLKESHDGPKYVCKLCKKGFNIQQWFEEHDNFHSGKKPFTCELCEKTFLYTRHLEAHKFHFHPEKNKITEPNLHQCRVCNKHYQHRNSLNVHMNSHTGNVAVCDVCGKTLSSKEKLKFHLRTHTGYKPFCCTYCGKCFTKKPILVEHIRIHTGEKPYVCEYCSKGFSQRSSLVIHIRSHTGEKPFVCSVCSKGKVLIDDQVYFIQETIIVGVVDDEPPPKRRREFLCEECGLVLKSSASLSHHKDIVHKSTLKPEILCNQCGMFFKTNCYQAHRRCHTYSCDVCPAEFMTLEDLTNHQQTHATVKYFCDKCNAYFLLPFDLVLHTQEHENSEKMRCIKCPFVTKNQWTMKDHLRRHAASFNYVCEICHKRFYRKLQLKAHREVHAQEKKFTCKFCDKKFIAQRYLCVHEKLNHTKELTGIEISYQCAECGRQFTFEKSLKRHLSSIHKIGPNWQVSCPICEKVVSNNYNLKIHMRMHTGEKPLVCETCGSRFATPKTFRKHVVCKHGAVVAKNRLQIKFEVEDADVAVNILRRKLRRKLKTTEDDTDYVPSQKKRVKKEKLPILIDLKEPLPKQRIWTCRKCLMEFPKRKHLFDHSKSHHRNHEDQQETLPYKYDEALEVYTCNTCSAEFADKCETETHIQKKHTEEYDCEECHKKFNSAYLFSCHTQQHSEDGKFSCPLCSYSTPRRTCIMTHINRMHYHKFYYYCKTCGKGFNDSVIFKEHDNEHLGLKPFICVVCHKAFVFSRYLQLHQTRYHTVGIEGQLHEKQCPVCLKQFAKMETLTKHLTTRHATGSGAPREKRHLCDVCGKGFATKDKLRIHYRIHTGIKPYVCSYCPKSFIKRDYLIMHERVHTGEKPYACHFCGKCFNQAAPLRIHIRGHTGERPYICQFCNCGFISKGSLNMHRKVCRGSVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -