Spec004015.1
Basic Information
- Insect
- Schizotus pectinicornis
- Gene Symbol
- -
- Assembly
- GCA_951805265.1
- Location
- OX638203.1:15154325-15160551[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.071 4.9 8.0 0.4 1 23 130 153 130 153 0.89 2 30 0.096 6.5 7.6 9.8 1 21 158 178 158 181 0.88 3 30 1.1 74 4.2 3.9 1 23 187 210 187 210 0.96 4 30 0.00047 0.032 14.8 0.4 1 23 216 238 216 238 0.96 5 30 0.0013 0.089 13.4 0.7 1 23 244 267 244 267 0.96 6 30 0.00021 0.015 15.9 4.6 1 23 278 300 278 300 0.97 7 30 6.5e-06 0.00044 20.7 1.2 3 23 308 328 307 328 0.98 8 30 3.4e-05 0.0023 18.4 3.2 1 23 334 356 334 356 0.97 9 30 7.1e-07 4.8e-05 23.7 3.2 1 23 362 384 362 384 0.98 10 30 0.00015 0.01 16.4 2.6 2 23 459 480 458 480 0.96 11 30 0.04 2.7 8.8 0.2 1 23 500 522 500 522 0.98 12 30 2.9e-05 0.002 18.6 0.4 1 23 526 548 526 548 0.98 13 30 0.014 0.96 10.2 2.2 1 23 554 577 554 577 0.96 14 30 0.0016 0.11 13.2 0.4 1 23 583 605 583 605 0.96 15 30 0.002 0.13 12.9 2.3 1 23 611 634 611 634 0.96 16 30 0.00018 0.012 16.1 2.3 2 23 646 668 645 668 0.97 17 30 8.4e-05 0.0057 17.2 0.7 3 23 681 701 679 701 0.96 18 30 6.6e-06 0.00045 20.7 1.4 1 23 707 729 707 729 0.98 19 30 1e-05 0.0007 20.0 0.7 1 23 735 757 735 757 0.98 20 30 2.8e-05 0.0019 18.7 1.7 2 23 832 853 831 853 0.96 21 30 0.049 3.4 8.5 0.1 1 23 873 895 873 895 0.97 22 30 0.00019 0.013 16.1 0.1 1 23 899 921 899 921 0.98 23 30 0.035 2.4 9.0 2.4 1 23 927 950 927 950 0.96 24 30 0.00031 0.021 15.4 0.2 1 23 956 978 956 978 0.96 25 30 0.0023 0.16 12.6 2.0 1 23 984 1007 984 1007 0.96 26 30 0.0077 0.53 11.0 1.0 2 23 1019 1041 1018 1041 0.95 27 30 5.9e-05 0.004 17.7 1.1 3 23 1054 1074 1052 1074 0.96 28 30 6.6e-06 0.00045 20.7 1.4 1 23 1080 1102 1080 1102 0.98 29 30 1e-05 0.0007 20.0 0.7 1 23 1108 1130 1108 1130 0.98 30 30 0.069 4.7 8.0 0.7 1 19 1136 1154 1136 1157 0.96
Sequence Information
- Coding Sequence
- ATGAGAACAAGACTTCCGGAAAACGTCTATCGTCTGAAGAATTCAACGGAAGTGACGTATTCCGAGAACTTGGAGCGCATGTTGAAGCAAAAACTTCCAGAAGTCGACATAATTCCGGTAAAGCACCAAGTCCGCGTCAAGTGCATGCAGGACATGCTGTCATCGGACGTCAAAGTTCGTTACAAGAACCCTTTCATCTACGCAAAGACCGGTACTGGCTCTAAGAAATTAAGAAGGCGCACCGAGTCCCAACCAAAAAACGTGAAATGGGCCTGCATGATCTGTTCCGAAGTCAAAGAAGACAAACAATCCTTAATCGAACACTACGAGTTCCACAAGAACGAAACGGAAAGTCTCGGCCTAGGCGACCATGTCAGCAGCGATTATTTTTTGTGTCCCGTCTGCCTGACTGACTTCACCTCATTGAAGAGTTACGAGAAGCACGTCGAGGATAAACACGGAGAAAAGCAGTTCGCTTGCGACCATTGCCACAGATCATTCAAGAATTGCTACCAGTTGTGCTTGCACAACTACAACGTCCATTCCgttgataaaatttacaaatgcgTCTTGTGCAACTTTACAACGAAACATTTACGGTCTTTACGGCCGCACCTCAAACAGAAACACGAAGACGAGTTCAAGTACCGTTGCGAAATCTGCAACAAGGGTTTCGCTTCTGCGACTTGGTACGAGGAACACAAGAACTTTCATACTGGCGCTATGCCTTTCGAATGCGACATTTGTCTCAAGAGCTTCCCCTACACCCGCTATTTGATAGCTCATAAAAAGAACATGCATCCCAACGTGCTGTCGTCCTCCCCTGTCAGTCACGAGTGCGAAATTTGTCATAAGAGATTCGCccacaaaaaaagtttggtgTTGCACGTCAGGGGGCATACTGGGGAGAATACGGTTCTGTGCGAAATGTGTGGCAAGAGTTTGTCGAGCTCGGAACATCTTAAGCAGCACATCCGCATTCATACGGGTTACAAACCGCACACTTGTGCGGTGTGCGGCAAGAGTTTTGCTAAGAAGTGCAATTTGACGCTGCATGAGAGGGTGCATAGCGGGGAGAAGCCGTATGTGTGCAGTACTTGCGGTAAATGCTTTTCGCAGAGGTCGACTCTTGTGATACATCAGCGGTACCATTCGGGAGAGAGGCCTTACGTTTGTCATTTGTGCAATAGGGGAAAACTGTCGCTTCGGGGTTGTTCAACgaagaaagttgaaacttcTTCACCTTCCCACGAGATAAGATCATCATCAGGCAGCTCCGACGACGACAAAGCTCTTGCCGTCAGATTACAgcaacaacatcaaatttgCGACCCCGAAAGAATTAAAACGAAACGAAACATGAACAGAACGTGGCCTTGTAAAAAGTGTCAGCAAACATTCAGAACTTCAAAACTTTTACGAAACCATCGCACATCTCATACCCCCCAGCTCCCCTTGAAAGACCCCGGCTACAAACTGGACCCCATCCAAGACATTTACGTCTGCACCACGTGTTCTGCggaatttcaaaacaaaaccgAAGCGGAAAAGCACGCAGCTACTCACGAAGAAGTTTTCCAGTGCCAAATTTGCAGCGAAAAATTCGAGAGAGCATACAATTTGGGTACCCACATGGCGAGTCATAGCGACGATAAACTTTTCAGGTGTCCCTTGTGCAATTACAAATCCCCCAAACGCACCAGTCTTTTCATCCACATCAACCACATGCATTTGCGGAAATTCTATTACTCCTGCTCGACCTGCGGCAAGGGATTCAACGATGCCATCTTCTTCAAAGAGCACGAAAATGAACATTTGGGTTTGCGGCCGTTTGTTTGTGTGGTTTGCAACAAAGACTTTATCTACTCGCGTTACCTTCACAATCACCAGATTCGGTACCATCGAGTCGGGATTGATGGGGAACTGCTGCCGAATCAGTGCAGCGTTTGCAAGAAAACCTTCAGCAAATTGCTATCGTTGCAGAAACACTTACAAAGGTATCACGTTAGAAACAAAATACCCCATGAGAAGAAACACCTCTGCGACCTCTGCGGAAAAGGGTTTGCACAAAGAAACAAGTTGATAATTCACTATAGGGTGCACACTGGGGTTAAACCGTACGTGTGTTCTTACTGCAGCAAGAGCTTTACGAAAAAGGATTATTTGGTGATGCACGAGAGGGTGCACAGTGGGGAAAAGCCGTACTCTTGCGAGTATTGCGGTAAATGTTTCAGTCAGGGGGCGCCACTGAGGATCCATCTTAGAGGGCATACCGGGGAACGGCCGTACGTGTGCAACTTCTGCAACAACGGAAAACTGTCGGTTCGAAGTTTTGCCAGAACGAAAAAAGTTGAGACTTGGGGAGCCTTGGATCGGGTAACAAAATCGTCAGGAAGCACCGACGACGACGAGCCTCTCTCCTTCAGATTACAGCAACATCAGATTCGCAACCCGGAGAGAACAAAAATGCTCCGAAACATGAACCGAACGTGGTCTTGCGAGAAATGCCAAGAGACCTTTCGAACATCAAAACTTTTAAGAGCCCATCGCAAATCGCACGCCCCAAAACTTCCCCTGAAAGAGCCCGGCTACAAATTCGACCCCATCCAAGACCTCTACGTTTGCACCACTTGCTCGGCCGAATTCCAAAACCAAAACGAGGCCGAAAAGCACGTAATCGTCCACGAAGAGATCTTCCGATGTGAAGTTTGCAACGAGCAATTCGAGAGGGCATACAATTTAGGCATCCACTTGTCGATCCATGGCGCCGATACGCTCTTCAAATGCCCGTTGTGCACTTTCAAGACCCCCAAAAGCACCAGTCTTCTCACCCACATCAACCACATGCATTTGAGGAAATTCTATTACTCGTGTCCAACTTGCGGGAAAGGTTTCAACGATGCCGTTTTCTTTAAGGAGCACGAAAACGAGCATCTCGGTGTAAGACCGTTCGTTTGTGTTGTTTGCAACAAGGATTTTATATACTCCCGTTACCTGCACAGCCACCAGATTCGCAACCATCGAGTCGGCATTGACGGAGAACTCCTTCCGAATCAGTGCAACGTTTGCATGAAAACCTTTAGCAAAATGATTTCGTTGCAGAAGCATCTACAAGGAAATCACGTTAGGAGCAAAATTCCCGCGGAGAAGAAGCACCTCTGCGACCTCTGCGGCAAAGGTTTTGCTCGAAGGAACAAACTGATGGTTCACTATAGAGTGCACACCGGGGTTAAACCGTATGTGTGTTCTTACTGCAGTAAGAGCTTTACGAAAAAGGATTATTTGGTGATGCATGAGAGGGTGCACAGTGGGGAAAAGCCGTATTCTTGCGAGTATTGCGGTAAATGTTTTAGTCAGGGAGCGCCATTGAGGATCCATCTTAGAGGACACACCGGGGAACGGCCCTACGTCTGCAATTTCTGCAACAACGGGTTTGCTTCGAGGGGGGCCTTAAATATCCATTGTAAGAGTTGTAAGGGGGGTGTTTAG
- Protein Sequence
- MRTRLPENVYRLKNSTEVTYSENLERMLKQKLPEVDIIPVKHQVRVKCMQDMLSSDVKVRYKNPFIYAKTGTGSKKLRRRTESQPKNVKWACMICSEVKEDKQSLIEHYEFHKNETESLGLGDHVSSDYFLCPVCLTDFTSLKSYEKHVEDKHGEKQFACDHCHRSFKNCYQLCLHNYNVHSVDKIYKCVLCNFTTKHLRSLRPHLKQKHEDEFKYRCEICNKGFASATWYEEHKNFHTGAMPFECDICLKSFPYTRYLIAHKKNMHPNVLSSSPVSHECEICHKRFAHKKSLVLHVRGHTGENTVLCEMCGKSLSSSEHLKQHIRIHTGYKPHTCAVCGKSFAKKCNLTLHERVHSGEKPYVCSTCGKCFSQRSTLVIHQRYHSGERPYVCHLCNRGKLSLRGCSTKKVETSSPSHEIRSSSGSSDDDKALAVRLQQQHQICDPERIKTKRNMNRTWPCKKCQQTFRTSKLLRNHRTSHTPQLPLKDPGYKLDPIQDIYVCTTCSAEFQNKTEAEKHAATHEEVFQCQICSEKFERAYNLGTHMASHSDDKLFRCPLCNYKSPKRTSLFIHINHMHLRKFYYSCSTCGKGFNDAIFFKEHENEHLGLRPFVCVVCNKDFIYSRYLHNHQIRYHRVGIDGELLPNQCSVCKKTFSKLLSLQKHLQRYHVRNKIPHEKKHLCDLCGKGFAQRNKLIIHYRVHTGVKPYVCSYCSKSFTKKDYLVMHERVHSGEKPYSCEYCGKCFSQGAPLRIHLRGHTGERPYVCNFCNNGKLSVRSFARTKKVETWGALDRVTKSSGSTDDDEPLSFRLQQHQIRNPERTKMLRNMNRTWSCEKCQETFRTSKLLRAHRKSHAPKLPLKEPGYKFDPIQDLYVCTTCSAEFQNQNEAEKHVIVHEEIFRCEVCNEQFERAYNLGIHLSIHGADTLFKCPLCTFKTPKSTSLLTHINHMHLRKFYYSCPTCGKGFNDAVFFKEHENEHLGVRPFVCVVCNKDFIYSRYLHSHQIRNHRVGIDGELLPNQCNVCMKTFSKMISLQKHLQGNHVRSKIPAEKKHLCDLCGKGFARRNKLMVHYRVHTGVKPYVCSYCSKSFTKKDYLVMHERVHSGEKPYSCEYCGKCFSQGAPLRIHLRGHTGERPYVCNFCNNGFASRGALNIHCKSCKGGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -